Wall clock time and date at job start Tue Mar 31 2020 12:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38292 * 119.92391 * 2 1 4 4 C 1.38085 * 120.07987 * 179.97438 * 3 2 1 5 5 C 1.38972 * 119.91986 * 0.02562 * 4 3 2 6 6 S 1.76204 * 120.07773 * 180.02562 * 5 4 3 7 7 C 1.81398 * 102.99820 * 179.87742 * 6 5 4 8 8 C 1.53006 * 110.05657 * 294.06192 * 7 6 5 9 9 N 1.46498 * 109.46972 * 306.51770 * 8 7 6 10 10 C 1.34773 * 120.00100 * 174.84428 * 9 8 7 11 11 O 1.21689 * 119.99892 * 5.01073 * 10 9 8 12 12 C 1.46369 * 120.00159 * 185.01454 * 10 9 8 13 13 H 1.08003 * 120.00331 * 5.54561 * 12 10 9 14 14 C 1.40046 * 120.00307 * 185.54184 * 12 10 9 15 15 N 1.30674 * 119.99912 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 120.00333 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47001 * 59.99755 * 16 14 12 18 18 H 1.48500 * 109.46913 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46674 * 300.00005 * 16 14 12 20 20 C 1.53877 * 110.03435 * 55.47561 * 7 6 5 21 21 C 1.54268 * 106.59777 * 119.28379 * 20 7 6 22 22 C 1.54894 * 104.19615 * 336.39427 * 21 20 7 23 23 C 1.54266 * 110.03478 * 172.64307 * 7 6 5 24 24 C 1.38968 * 119.83884 * 0.27436 * 5 4 3 25 25 C 1.38083 * 119.91863 * 359.44914 * 24 5 4 26 26 H 1.08998 * 109.47434 * 89.99362 * 1 2 3 27 27 H 1.08996 * 109.47315 * 209.99989 * 1 2 3 28 28 H 1.08997 * 109.46891 * 329.99967 * 1 2 3 29 29 H 1.08001 * 119.96306 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.03690 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46881 * 66.51153 * 8 7 6 32 32 H 1.08996 * 109.46754 * 186.51605 * 8 7 6 33 33 H 0.97001 * 119.99743 * 354.84379 * 9 8 7 34 34 H 0.96996 * 120.00305 * 179.97438 * 15 14 12 35 35 H 1.08996 * 110.03600 * 238.57314 * 20 7 6 36 36 H 1.09000 * 110.03182 * 0.02562 * 20 7 6 37 37 H 1.09000 * 110.48433 * 95.07019 * 21 20 7 38 38 H 1.09002 * 110.48885 * 217.71496 * 21 20 7 39 39 H 1.08998 * 110.75418 * 279.62705 * 22 21 20 40 40 H 1.09003 * 110.75530 * 156.25587 * 22 21 20 41 41 H 1.09000 * 110.48109 * 23.00496 * 23 7 6 42 42 H 1.09003 * 110.48538 * 145.64263 * 23 7 6 43 43 H 1.08003 * 120.03762 * 179.72758 * 24 5 4 44 44 H 1.08006 * 119.95630 * 180.27350 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5777 1.2023 0.0005 5 6 4.2742 -0.0003 0.0005 6 16 6.0362 -0.0004 0.0019 7 6 6.4441 -1.7679 0.0052 8 6 5.9901 -2.4087 1.3183 9 7 6.5467 -1.6576 2.4463 10 6 6.1959 -1.9776 3.7076 11 8 5.4897 -2.9465 3.9156 12 6 6.6644 -1.1596 4.8274 13 1 7.2155 -0.2501 4.6384 14 6 6.3979 -1.5560 6.1438 15 7 5.7307 -2.6560 6.3726 16 14 6.9952 -0.5117 7.5729 17 1 6.3975 0.8444 7.4787 18 1 6.5879 -1.1450 8.8529 19 1 8.4755 -0.4048 7.5231 20 6 5.7653 -2.4678 -1.1852 21 6 6.8960 -3.0606 -2.0511 22 6 8.1348 -2.1999 -1.6994 23 6 7.9637 -1.9599 -0.1789 24 6 3.5775 -1.2027 -0.0058 25 6 2.1967 -1.1988 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6550 2.1328 -0.0004 30 1 4.1158 2.1388 0.0010 31 1 4.9016 -2.3928 1.3730 32 1 6.3411 -3.4398 1.3597 33 1 7.1677 -0.9301 2.2853 34 1 5.5464 -2.9309 7.2843 35 1 5.1124 -3.2639 -0.8275 36 1 5.1910 -1.7453 -1.7652 37 1 7.0698 -4.1043 -1.7892 38 1 6.6547 -2.9671 -3.1100 39 1 8.1165 -1.2559 -2.2440 40 1 9.0555 -2.7468 -1.9029 41 1 8.5015 -1.0631 0.1287 42 1 8.3099 -2.8258 0.3855 43 1 4.1156 -2.1392 -0.0102 44 1 1.6547 -2.1330 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187769012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:28 Heat of formation + Delta-G solvation = -22.524262 kcal Electronic energy + Delta-G solvation = -24824.860050 eV Core-core repulsion = 21446.571903 eV Total energy + Delta-G solvation = -3378.288147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.33060 -38.58962 -36.83657 -33.37395 -32.78087 -32.22585 -31.07188 -29.40428 -28.80651 -26.86325 -26.33800 -23.84915 -22.68009 -21.56177 -20.81352 -20.00649 -19.57580 -17.50897 -17.20236 -16.18605 -15.56989 -15.28294 -15.16820 -14.89088 -14.37408 -13.99510 -13.90471 -13.68762 -13.64066 -13.45789 -13.14765 -12.83531 -12.31659 -12.28651 -12.18083 -12.05125 -11.56994 -11.51281 -11.38519 -11.14274 -11.06409 -10.97783 -10.83191 -10.75940 -10.63571 -10.40583 -10.27112 -10.20034 -9.72978 -9.28611 -8.81587 -8.78144 -7.58043 -7.46802 -7.01604 -6.13881 -4.57626 1.35604 1.53212 1.74633 2.56782 3.19220 3.23603 3.25876 3.81787 4.13773 4.33969 4.46068 4.63610 4.79331 4.88566 4.96159 5.00568 5.09896 5.27204 5.34019 5.34389 5.36195 5.50844 5.52886 5.57077 5.61611 5.73015 5.75531 5.78683 5.81182 5.84845 5.97233 6.04131 6.09075 6.09950 6.14475 6.27830 6.34394 6.35030 6.45230 6.46396 6.70130 7.06033 7.48792 8.00291 8.13842 8.39172 9.08114 9.60112 10.65478 10.84235 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.004949 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.557187 B = 5656.715609 C = 7381.903931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.076 4.076 6 S -0.100 6.100 7 C -0.058 4.058 8 C 0.136 3.864 9 N -0.758 5.758 10 C 0.558 3.442 11 O -0.584 6.584 12 C -0.543 4.543 13 H 0.067 0.933 14 C 0.089 3.911 15 N -0.771 5.771 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.135 4.135 25 C -0.102 4.102 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.383 0.617 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.142 0.858 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 4.344 -17.537 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.189 4.189 6 S 0.147 5.853 7 C -0.169 4.169 8 C 0.008 3.992 9 N -0.415 5.415 10 C 0.362 3.638 11 O -0.467 6.467 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.400 5.400 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.135 4.135 24 C -0.158 4.158 25 C -0.122 4.122 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.216 0.784 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.080 4.408 -17.234 17.910 hybrid contribution -0.363 -0.132 0.836 0.921 sum -2.443 4.276 -16.398 17.121 Atomic orbital electron populations 1.20751 0.91366 1.02757 1.01874 1.19881 0.95946 0.93199 1.01077 1.20865 0.93509 0.97459 1.00743 1.20684 0.93948 0.96306 1.01524 1.21684 0.96998 0.96292 1.03928 1.85096 0.99118 1.09677 1.91437 1.24018 1.00047 0.93783 0.99009 1.21332 0.98635 0.95225 0.83962 1.46122 1.51734 1.38371 1.05253 1.18167 0.80265 0.84754 0.80624 1.90587 1.41516 1.30612 1.83978 1.20837 1.38259 1.09147 0.89798 0.91505 1.25686 0.93229 0.94511 0.99639 1.70008 1.29307 1.19701 1.20940 0.86467 0.79733 0.80608 0.80133 1.19282 1.20614 1.19301 1.22723 0.98170 1.00110 0.94785 1.22348 0.94701 0.99493 0.99248 1.22515 0.97924 1.00117 0.95471 1.22283 0.91398 1.02908 0.96892 1.21820 0.94997 0.97717 1.01282 1.20937 0.93734 0.97573 0.99914 0.91519 0.91598 0.91702 0.85989 0.85856 0.92066 0.92559 0.78394 0.92170 0.90576 0.90379 0.91305 0.91431 0.91078 0.91250 0.90662 0.89476 0.84072 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.10 -1.30 5.88 -104.58 -0.62 -1.92 16 3 C -0.11 -1.40 9.69 -39.62 -0.38 -1.79 16 4 C -0.10 -1.48 9.79 -39.37 -0.39 -1.86 16 5 C -0.08 -1.21 5.76 -39.04 -0.22 -1.44 16 6 S -0.10 -1.53 19.45 -107.50 -2.09 -3.62 16 7 C -0.06 -0.84 0.42 -89.50 -0.04 -0.88 16 8 C 0.14 2.61 4.01 -4.04 -0.02 2.60 16 9 N -0.76 -17.28 5.02 -61.72 -0.31 -17.59 16 10 C 0.56 16.17 7.73 -12.99 -0.10 16.07 16 11 O -0.58 -19.18 15.05 5.20 0.08 -19.10 16 12 C -0.54 -15.73 9.54 -35.63 -0.34 -16.07 16 13 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 14 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 15 N -0.77 -23.54 11.84 55.55 0.66 -22.89 16 16 Si 0.91 20.63 29.56 -169.99 -5.02 15.61 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.12 -1.45 4.27 -25.61 -0.11 -1.55 16 21 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 22 C -0.12 -1.25 6.91 -24.74 -0.17 -1.42 16 23 C -0.10 -1.23 5.58 -25.08 -0.14 -1.37 16 24 C -0.13 -2.12 6.89 -39.37 -0.27 -2.39 16 25 C -0.10 -1.47 9.69 -39.61 -0.38 -1.85 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.06 1.29 5.11 -51.93 -0.27 1.02 16 32 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 33 H 0.38 8.02 7.59 -40.82 -0.31 7.71 16 34 H 0.27 7.44 8.29 -40.82 -0.34 7.11 16 35 H 0.08 0.93 6.61 -51.93 -0.34 0.59 16 36 H 0.08 0.96 6.45 -51.93 -0.33 0.63 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.97 7.80 -51.93 -0.40 0.57 16 42 H 0.09 1.18 7.76 -51.93 -0.40 0.78 16 43 H 0.14 2.18 2.47 -52.48 -0.13 2.05 16 44 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -34.81 359.74 -10.73 -45.54 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.37 Total: 10.23 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.09 Total: -13.59 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.35 Total: -40.48 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.08 Total: -19.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.09 Total: -3.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.81 -10.73 -45.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187769012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.012 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds