Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38254 * 120.00319 * 0.26336 * 4 3 2 6 6 C 1.50701 * 120.00254 * 180.02562 * 5 4 3 7 7 C 1.38216 * 119.99725 * 359.97438 * 5 4 3 8 8 C 1.50706 * 119.99787 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.86949 * 40.70918 * 8 7 5 10 10 C 1.54318 * 109.88378 * 279.68757 * 8 7 5 11 11 C 1.55166 * 102.94048 * 218.39132 * 10 8 7 12 12 C 1.54908 * 101.58039 * 35.50372 * 11 10 8 13 13 N 1.47023 * 109.87645 * 161.71946 * 8 7 5 14 14 C 1.34777 * 125.64895 * 298.30967 * 13 8 7 15 15 O 1.21283 * 119.99930 * 0.02562 * 14 13 8 16 16 C 1.50700 * 119.99982 * 180.02562 * 14 13 8 17 17 S 1.81002 * 109.47323 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00043 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00025 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00118 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47183 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47410 * 119.99747 * 22 20 18 25 25 H 1.48498 * 109.47175 * 239.99755 * 22 20 18 26 26 C 1.38209 * 120.00297 * 180.26074 * 2 1 3 27 27 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 28 28 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 29 29 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.99941 * 180.27784 * 4 3 2 32 32 H 1.08998 * 109.46845 * 89.99859 * 6 5 4 33 33 H 1.08996 * 109.47280 * 210.00020 * 6 5 4 34 34 H 1.08999 * 109.46887 * 329.99914 * 6 5 4 35 35 H 1.08999 * 110.72162 * 336.74853 * 10 8 7 36 36 H 1.09002 * 110.72299 * 100.03003 * 10 8 7 37 37 H 1.08998 * 111.00422 * 153.57636 * 11 10 8 38 38 H 1.08997 * 111.00120 * 277.42488 * 11 10 8 39 39 H 1.08992 * 110.36868 * 81.83050 * 12 11 10 40 40 H 1.08999 * 110.36384 * 204.15094 * 12 11 10 41 41 H 1.08996 * 109.47187 * 300.00446 * 16 14 13 42 42 H 1.09006 * 109.47083 * 60.00490 * 16 14 13 43 43 H 0.96991 * 120.00211 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.99972 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0062 6 6 5.7787 0.0002 0.0132 7 6 3.5806 -1.1968 0.0012 8 6 4.3343 -2.5019 0.0011 9 1 5.1901 -2.4356 0.6728 10 6 4.8131 -2.8312 -1.4285 11 6 4.6171 -4.3680 -1.5152 12 6 3.3297 -4.5651 -0.6766 13 7 3.4458 -3.5922 0.4293 14 6 2.8402 -3.6865 1.6297 15 8 3.0100 -2.8227 2.4640 16 6 1.9522 -4.8651 1.9352 17 16 1.2912 -4.7038 3.6124 18 6 0.3183 -6.1703 3.7002 19 1 0.2762 -6.8418 2.8554 20 6 -0.3940 -6.4624 4.8551 21 7 -0.3423 -5.6443 5.8850 22 14 -1.4248 -8.0174 4.9484 23 1 -1.3139 -8.7624 3.6686 24 1 -0.9347 -8.8702 6.0610 25 1 -2.8448 -7.6562 5.1901 26 6 2.1981 -1.1969 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1327 0.0004 31 1 4.1203 2.1328 0.0104 32 1 6.1372 -0.0022 1.0425 33 1 6.1444 -0.8885 -0.5011 34 1 6.1443 0.8914 -0.4969 35 1 4.1966 -2.3215 -2.1688 36 1 5.8637 -2.5689 -1.5534 37 1 4.4636 -4.6847 -2.5468 38 1 5.4596 -4.8952 -1.0677 39 1 2.4475 -4.3518 -1.2800 40 1 3.2849 -5.5807 -0.2834 41 1 1.1286 -4.8940 1.2217 42 1 2.5311 -5.7855 1.8594 43 1 -0.8398 -5.8486 6.6921 44 1 1.6581 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268482347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -37.623260 kcal Electronic energy + Delta-G solvation = -24703.250551 eV Core-core repulsion = 21324.307662 eV Total energy + Delta-G solvation = -3378.942889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70106 -39.95449 -38.29922 -34.99625 -34.61009 -33.03079 -32.57363 -30.50257 -30.00740 -28.91663 -27.68844 -25.77437 -24.76536 -23.17961 -22.22564 -21.46536 -20.24149 -19.46610 -18.14026 -17.65181 -16.91326 -16.81083 -16.35873 -16.25707 -15.92317 -15.79122 -15.11101 -14.99412 -14.69640 -14.37598 -14.26579 -14.11226 -14.04872 -13.67861 -13.58077 -13.43040 -13.22025 -13.07890 -12.92970 -12.89825 -12.76316 -12.62037 -12.28716 -12.05830 -11.90885 -11.78768 -11.72137 -11.55533 -11.17849 -10.93342 -10.30019 -9.82108 -9.58442 -9.24680 -8.70177 -8.36802 -6.15612 0.42182 0.49806 1.22074 1.39851 1.43124 1.55318 1.58413 2.07626 2.25063 2.78602 2.97397 3.23005 3.52983 3.61213 3.78220 3.91071 3.92282 4.01748 4.11095 4.16117 4.23557 4.28110 4.35772 4.39733 4.48037 4.59940 4.65783 4.73295 4.76580 4.78989 4.83766 4.86231 4.93234 4.97722 5.05210 5.12249 5.20997 5.24998 5.35082 5.39287 5.42159 5.57867 5.69169 5.76476 6.15830 6.17641 6.41441 7.04249 7.14648 8.72839 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.003649 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.531231 B = 7671.332937 C = 8535.013053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.114 4.114 7 C -0.092 4.092 8 C 0.172 3.828 9 H 0.073 0.927 10 C -0.111 4.111 11 C -0.119 4.119 12 C 0.085 3.915 13 N -0.614 5.614 14 C 0.546 3.454 15 O -0.556 6.556 16 C -0.120 4.120 17 S -0.148 6.148 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 7.999 -21.660 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.098 4.098 6 C -0.170 4.170 7 C -0.093 4.093 8 C 0.069 3.931 9 H 0.091 0.909 10 C -0.148 4.148 11 C -0.156 4.156 12 C -0.036 4.036 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.433 6.433 16 C -0.271 4.271 17 S 0.080 5.920 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.135 4.135 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.076 9.288 -20.193 24.834 hybrid contribution -1.239 -1.723 -0.008 2.122 sum 9.837 7.565 -20.201 23.708 Atomic orbital electron populations 1.20773 0.90569 1.02539 1.02874 1.20171 0.97007 0.93469 1.00311 1.21257 0.94803 0.97559 1.01127 1.21292 0.94138 0.98174 1.00415 1.19981 0.97503 0.92054 1.00256 1.20892 0.89295 1.04317 1.02494 1.20054 0.93624 0.95224 1.00434 1.20635 0.90958 0.83401 0.98109 0.90909 1.22705 1.03335 0.96863 0.91920 1.22804 0.96098 0.95136 1.01598 1.22751 1.00462 0.92826 0.87601 1.48606 1.47931 1.24973 1.13334 1.19698 0.79678 0.86360 0.80822 1.90704 1.62879 1.42317 1.47448 1.23307 1.01449 0.99746 1.02564 1.85603 1.60248 1.33559 1.12631 1.23217 1.33420 1.08587 1.04155 0.90045 1.26132 0.97502 1.01395 0.93984 1.70192 1.41428 1.38373 1.04812 0.84899 0.77366 0.76724 0.78918 1.17981 1.19804 1.19841 1.20795 0.94324 0.97218 1.01160 0.89645 0.93481 0.90533 0.84249 0.83592 0.91862 0.90144 0.89430 0.89915 0.87244 0.86702 0.89646 0.90489 0.89794 0.88161 0.87709 0.91958 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 10.01 71.24 0.71 -2.13 16 2 C -0.11 -3.22 5.88 -19.87 -0.12 -3.34 16 3 C -0.13 -3.25 9.70 22.27 0.22 -3.04 16 4 C -0.12 -2.84 9.70 22.27 0.22 -2.63 16 5 C -0.10 -2.40 5.88 -19.87 -0.12 -2.51 16 6 C -0.11 -1.97 9.28 71.24 0.66 -1.31 16 7 C -0.09 -2.64 4.39 -19.86 -0.09 -2.73 16 8 C 0.17 4.32 2.32 44.59 0.10 4.42 16 9 H 0.07 1.97 7.34 -2.39 -0.02 1.96 16 10 C -0.11 -1.62 5.88 31.78 0.19 -1.43 16 11 C -0.12 -1.47 7.09 31.99 0.23 -1.24 16 12 C 0.09 1.69 6.71 86.79 0.58 2.27 16 13 N -0.61 -18.03 2.19 -791.38 -1.73 -19.76 16 14 C 0.55 22.17 6.41 87.66 0.56 22.73 16 15 O -0.56 -27.77 15.41 -3.04 -0.05 -27.82 16 16 C -0.12 -5.09 5.18 71.24 0.37 -4.72 16 17 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 18 C -0.55 -31.84 9.50 67.95 0.65 -31.20 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 22 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.12 -3.76 8.18 22.27 0.18 -3.58 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 30 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.14 5.38 -2.39 -0.01 1.12 16 34 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.08 1.21 7.84 -2.39 -0.02 1.19 16 36 H 0.11 1.08 7.12 -2.39 -0.02 1.06 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.61 7.50 -2.39 -0.02 1.59 16 41 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.10 4.06 7.86 -2.39 -0.02 4.04 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.10 3.36 6.55 -2.91 -0.02 3.34 16 Total: -1.00 -80.72 368.80 5.17 -75.55 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.98 Total: 21.23 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 4.81 Total: -29.12 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -1.44 Total: -76.33 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -80.72 5.17 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268482347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.929 kcal (2) G-P(sol) polarization free energy of solvation -80.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds