Wall clock time and date at job start Tue Mar 31 2020 12:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00144 * 2 1 4 4 C 1.38218 * 120.00158 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99707 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99726 * 179.97438 * 5 4 3 7 7 C 1.38204 * 120.00259 * 359.95314 * 5 4 3 8 8 C 1.50708 * 120.00049 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.99685 * 323.90777 * 8 7 5 10 10 C 1.54322 * 109.87867 * 85.00656 * 8 7 5 11 11 C 1.55153 * 102.94269 * 141.61359 * 10 8 7 12 12 C 1.54917 * 101.57995 * 324.49512 * 11 10 8 13 13 N 1.47020 * 109.88229 * 202.81291 * 8 7 5 14 14 C 1.34777 * 125.65143 * 61.67650 * 13 8 7 15 15 O 1.21282 * 119.99545 * 359.97438 * 14 13 8 16 16 C 1.50702 * 120.00228 * 179.97438 * 14 13 8 17 17 S 1.80997 * 109.47167 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00027 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99691 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99666 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00107 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47115 * 90.00053 * 22 20 18 24 24 H 1.48502 * 109.46910 * 209.99603 * 22 20 18 25 25 H 1.48497 * 109.47174 * 329.99881 * 22 20 18 26 26 C 1.38211 * 120.00115 * 180.21132 * 2 1 3 27 27 H 1.08997 * 109.47311 * 89.99890 * 1 2 3 28 28 H 1.09006 * 109.47266 * 209.99878 * 1 2 3 29 29 H 1.08997 * 109.47128 * 329.99809 * 1 2 3 30 30 H 1.07996 * 119.99651 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.99868 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47602 * 269.97824 * 6 5 4 33 33 H 1.09005 * 109.46845 * 29.98111 * 6 5 4 34 34 H 1.09000 * 109.47382 * 149.97563 * 6 5 4 35 35 H 1.08997 * 110.72456 * 23.24598 * 10 8 7 36 36 H 1.09004 * 110.87111 * 260.04183 * 10 8 7 37 37 H 1.09005 * 111.00422 * 206.42378 * 11 10 8 38 38 H 1.08998 * 111.04242 * 82.58375 * 11 10 8 39 39 H 1.08998 * 110.36726 * 155.84993 * 12 11 10 40 40 H 1.09005 * 110.36534 * 278.17514 * 12 11 10 41 41 H 1.09003 * 109.46954 * 300.00312 * 16 14 13 42 42 H 1.08998 * 109.46474 * 60.00609 * 16 14 13 43 43 H 0.97001 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.00336 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 3.5807 -1.1969 0.0010 8 6 4.3342 -2.5021 0.0016 9 1 5.2369 -2.4116 -0.6025 10 6 4.7070 -2.8921 1.4474 11 6 4.5075 -4.4308 1.4546 12 6 3.2856 -4.5904 0.5158 13 7 3.4801 -3.5727 -0.5330 14 6 2.9614 -3.6170 -1.7761 15 8 3.1887 -2.7201 -2.5602 16 6 2.0991 -4.7809 -2.1919 17 16 1.5600 -4.5510 -3.9043 18 6 0.5979 -6.0112 -4.1208 19 1 0.4956 -6.7157 -3.3088 20 6 -0.0293 -6.2553 -5.3347 21 7 -0.7485 -7.3459 -5.4963 22 14 0.1471 -5.0363 -6.7390 23 1 1.3304 -5.3960 -7.5611 24 1 -1.0732 -5.0751 -7.5844 25 1 0.3244 -3.6687 -6.1880 26 6 2.1980 -1.1969 -0.0044 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1413 -0.0009 -1.0296 33 1 6.1424 0.8904 0.5112 34 1 6.1424 -0.8895 0.5126 35 1 4.0368 -2.4130 2.1611 36 1 5.7445 -2.6368 1.6633 37 1 4.2789 -4.7904 2.4580 38 1 5.3813 -4.9406 1.0488 39 1 3.2715 -5.5885 0.0780 40 1 2.3610 -4.4012 1.0611 41 1 2.6727 -5.7045 -2.1127 42 1 1.2270 -4.8378 -1.5405 43 1 -1.1865 -7.5167 -6.3447 44 1 1.6581 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268482348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:47 Heat of formation + Delta-G solvation = -18.716232 kcal Electronic energy + Delta-G solvation = -24754.300620 eV Core-core repulsion = 21376.177601 eV Total energy + Delta-G solvation = -3378.123019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65283 -38.85484 -37.15837 -34.07503 -32.43857 -31.92736 -31.65694 -29.38119 -28.93602 -27.98202 -25.61354 -24.88571 -23.79166 -22.23046 -21.40519 -20.45913 -18.90785 -17.66756 -16.93452 -16.53627 -15.74931 -15.26352 -15.10208 -14.91521 -14.80751 -14.24306 -14.09103 -13.83862 -13.49935 -13.35218 -13.27272 -13.05010 -12.80758 -12.74714 -12.68288 -12.30980 -12.07926 -11.95527 -11.91393 -11.45874 -11.33472 -11.23519 -11.14711 -11.00565 -10.91111 -10.74559 -10.59148 -9.85390 -9.47133 -8.99961 -8.74963 -8.53838 -8.48226 -8.30171 -6.91079 -6.28717 -4.00122 1.37454 1.47401 2.70044 2.99241 3.20731 3.33558 3.51295 3.60249 3.75134 4.30265 4.33950 4.42525 4.59487 4.74743 4.80470 4.84337 4.90597 5.04221 5.10542 5.12292 5.16074 5.21204 5.30001 5.46234 5.49558 5.51014 5.55650 5.58148 5.62216 5.64815 5.67553 5.71320 5.77045 5.84875 5.91959 5.97271 6.01584 6.15905 6.20418 6.34874 6.51656 6.64941 6.74069 7.08662 7.62753 7.94437 8.41716 8.49580 9.17725 10.80573 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.003955 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.776068 B = 7078.239236 C = 7950.249643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.086 4.086 6 C -0.116 4.116 7 C -0.078 4.078 8 C 0.179 3.821 9 H 0.084 0.916 10 C -0.122 4.122 11 C -0.132 4.132 12 C 0.097 3.903 13 N -0.621 5.621 14 C 0.545 3.455 15 O -0.506 6.506 16 C -0.117 4.117 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.097 3.903 21 N -0.881 5.881 22 Si 0.855 3.145 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.092 4.092 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.271 0.729 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.586 12.518 18.381 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.086 4.086 6 C -0.172 4.172 7 C -0.079 4.079 8 C 0.075 3.925 9 H 0.102 0.898 10 C -0.160 4.160 11 C -0.170 4.170 12 C -0.026 4.026 13 N -0.358 5.358 14 C 0.333 3.667 15 O -0.379 6.379 16 C -0.268 4.268 17 S 0.086 5.914 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.110 4.110 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.762 13.717 16.991 24.345 hybrid contribution -0.469 -0.811 0.096 0.942 sum 10.292 12.906 17.087 23.759 Atomic orbital electron populations 1.20781 0.91278 1.02307 1.02682 1.19877 0.96075 0.93084 0.99825 1.20945 0.94146 0.97300 1.01562 1.20888 0.94116 0.97108 1.01554 1.19581 0.95744 0.92448 1.00847 1.20827 0.91528 1.02396 1.02458 1.19813 0.93867 0.93935 1.00264 1.20379 0.92767 0.84653 0.94664 0.89822 1.22682 1.02428 0.96042 0.94843 1.22789 0.98331 0.95830 1.00035 1.22349 0.98325 0.92786 0.89116 1.48563 1.52124 1.22835 1.12288 1.19968 0.79553 0.87529 0.79632 1.90726 1.58456 1.38465 1.50302 1.23265 1.01260 0.98778 1.03488 1.84810 1.64926 1.33149 1.08550 1.22312 1.34977 1.06133 1.03418 0.89431 1.24691 0.93463 0.95103 0.97923 1.69937 1.31086 1.24933 1.25777 0.86753 0.78573 0.83821 0.82833 1.19199 1.19923 1.15928 1.20778 0.93447 0.97511 0.99274 0.90890 0.91677 0.91840 0.86431 0.86351 0.91106 0.91716 0.91584 0.90264 0.89890 0.89693 0.90350 0.90042 0.91329 0.88679 0.88730 0.91951 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.09 -1.21 5.88 -104.63 -0.62 -1.82 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.09 -1.06 5.88 -104.63 -0.62 -1.68 16 6 C -0.12 -1.09 9.24 36.01 0.33 -0.76 16 7 C -0.08 -1.06 4.31 -104.62 -0.45 -1.51 16 8 C 0.18 2.21 2.31 -68.10 -0.16 2.05 16 9 H 0.08 1.09 7.09 -51.93 -0.37 0.72 16 10 C -0.12 -1.02 6.05 -24.90 -0.15 -1.17 16 11 C -0.13 -1.00 7.09 -24.58 -0.17 -1.18 16 12 C 0.10 1.01 6.69 -2.53 -0.02 0.99 16 13 N -0.62 -8.74 2.14 -164.32 -0.35 -9.10 16 14 C 0.55 10.19 6.65 -10.98 -0.07 10.12 16 15 O -0.51 -11.39 15.54 5.56 0.09 -11.30 16 16 C -0.12 -2.34 5.16 36.01 0.19 -2.16 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 22 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 26 C -0.09 -1.35 8.33 -39.58 -0.33 -1.68 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.54 5.74 -51.93 -0.30 0.24 16 35 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 36 H 0.08 0.55 7.42 -51.93 -0.39 0.17 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.78 7.85 -51.91 -0.41 1.37 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.12 1.79 6.84 -52.48 -0.36 1.43 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -34.55 367.24 -9.75 -44.31 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.83 Total: 0.26 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.26 Total: -15.47 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.42 Total: -34.99 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.55 -9.75 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268482348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.591 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds