Wall clock time and date at job start Tue Mar 31 2020 12:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00144 * 2 1 4 4 C 1.38218 * 120.00158 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99707 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99726 * 179.97438 * 5 4 3 7 7 C 1.38204 * 120.00259 * 359.95314 * 5 4 3 8 8 C 1.50708 * 120.00049 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.99685 * 323.90777 * 8 7 5 10 10 C 1.54322 * 109.87867 * 85.00656 * 8 7 5 11 11 C 1.55153 * 102.94269 * 141.61359 * 10 8 7 12 12 C 1.54917 * 101.57995 * 324.49512 * 11 10 8 13 13 N 1.47020 * 109.88229 * 202.81291 * 8 7 5 14 14 C 1.34777 * 125.65143 * 61.67650 * 13 8 7 15 15 O 1.21282 * 119.99545 * 359.97438 * 14 13 8 16 16 C 1.50702 * 120.00228 * 179.97438 * 14 13 8 17 17 S 1.80997 * 109.47167 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00027 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99691 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99666 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00107 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47115 * 90.00053 * 22 20 18 24 24 H 1.48502 * 109.46910 * 209.99603 * 22 20 18 25 25 H 1.48497 * 109.47174 * 329.99881 * 22 20 18 26 26 C 1.38211 * 120.00115 * 180.21132 * 2 1 3 27 27 H 1.08997 * 109.47311 * 89.99890 * 1 2 3 28 28 H 1.09006 * 109.47266 * 209.99878 * 1 2 3 29 29 H 1.08997 * 109.47128 * 329.99809 * 1 2 3 30 30 H 1.07996 * 119.99651 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.99868 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47602 * 269.97824 * 6 5 4 33 33 H 1.09005 * 109.46845 * 29.98111 * 6 5 4 34 34 H 1.09000 * 109.47382 * 149.97563 * 6 5 4 35 35 H 1.08997 * 110.72456 * 23.24598 * 10 8 7 36 36 H 1.09004 * 110.87111 * 260.04183 * 10 8 7 37 37 H 1.09005 * 111.00422 * 206.42378 * 11 10 8 38 38 H 1.08998 * 111.04242 * 82.58375 * 11 10 8 39 39 H 1.08998 * 110.36726 * 155.84993 * 12 11 10 40 40 H 1.09005 * 110.36534 * 278.17514 * 12 11 10 41 41 H 1.09003 * 109.46954 * 300.00312 * 16 14 13 42 42 H 1.08998 * 109.46474 * 60.00609 * 16 14 13 43 43 H 0.97001 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.00336 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 3.5807 -1.1969 0.0010 8 6 4.3342 -2.5021 0.0016 9 1 5.2369 -2.4116 -0.6025 10 6 4.7070 -2.8921 1.4474 11 6 4.5075 -4.4308 1.4546 12 6 3.2856 -4.5904 0.5158 13 7 3.4801 -3.5727 -0.5330 14 6 2.9614 -3.6170 -1.7761 15 8 3.1887 -2.7201 -2.5602 16 6 2.0991 -4.7809 -2.1919 17 16 1.5600 -4.5510 -3.9043 18 6 0.5979 -6.0112 -4.1208 19 1 0.4956 -6.7157 -3.3088 20 6 -0.0293 -6.2553 -5.3347 21 7 -0.7485 -7.3459 -5.4963 22 14 0.1471 -5.0363 -6.7390 23 1 1.3304 -5.3960 -7.5611 24 1 -1.0732 -5.0751 -7.5844 25 1 0.3244 -3.6687 -6.1880 26 6 2.1980 -1.1969 -0.0044 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1413 -0.0009 -1.0296 33 1 6.1424 0.8904 0.5112 34 1 6.1424 -0.8895 0.5126 35 1 4.0368 -2.4130 2.1611 36 1 5.7445 -2.6368 1.6633 37 1 4.2789 -4.7904 2.4580 38 1 5.3813 -4.9406 1.0488 39 1 3.2715 -5.5885 0.0780 40 1 2.3610 -4.4012 1.0611 41 1 2.6727 -5.7045 -2.1127 42 1 1.2270 -4.8378 -1.5405 43 1 -1.1865 -7.5167 -6.3447 44 1 1.6581 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268482348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:47 Heat of formation + Delta-G solvation = -37.775442 kcal Electronic energy + Delta-G solvation = -24755.127089 eV Core-core repulsion = 21376.177601 eV Total energy + Delta-G solvation = -3378.949488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71811 -39.98949 -38.32872 -34.99767 -34.70100 -33.08816 -32.56205 -30.54321 -30.04008 -28.93230 -27.87618 -25.76027 -24.79272 -23.22638 -22.22103 -21.49080 -20.28372 -19.49148 -18.19362 -17.67345 -17.16142 -16.79362 -16.32915 -16.30539 -15.91297 -15.76847 -15.18089 -15.00951 -14.90297 -14.42283 -14.35350 -14.13536 -14.10644 -13.69738 -13.63212 -13.43299 -13.38437 -13.13610 -13.04193 -12.88308 -12.74898 -12.68284 -12.29407 -12.07498 -11.92792 -11.89187 -11.79444 -11.55402 -11.19822 -10.98833 -10.56535 -9.84924 -9.58820 -9.25265 -9.03457 -8.54229 -6.25325 0.41699 0.49148 0.93380 1.28263 1.42645 1.50410 1.53176 2.04009 2.22462 2.65725 2.79001 2.84078 3.45522 3.58530 3.77398 3.85953 3.91294 4.00875 4.08759 4.14051 4.19742 4.27329 4.35613 4.36152 4.47721 4.60009 4.65988 4.73377 4.75984 4.78446 4.82891 4.86419 4.92620 4.96888 5.05311 5.11780 5.20977 5.23971 5.34271 5.41186 5.57219 5.68178 5.68903 5.75302 6.08394 6.15381 6.37950 6.91039 7.08413 8.58368 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.003955 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.776068 B = 7078.239236 C = 7950.249643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.113 4.113 7 C -0.091 4.091 8 C 0.173 3.827 9 H 0.077 0.923 10 C -0.111 4.111 11 C -0.119 4.119 12 C 0.084 3.916 13 N -0.611 5.611 14 C 0.547 3.453 15 O -0.553 6.553 16 C -0.102 4.102 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.050 3.950 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.240 1.240 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.278 0.722 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 13.811 20.147 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.092 4.092 8 C 0.070 3.930 9 H 0.094 0.906 10 C -0.149 4.149 11 C -0.157 4.157 12 C -0.038 4.038 13 N -0.345 5.345 14 C 0.335 3.665 15 O -0.431 6.431 16 C -0.253 4.253 17 S 0.054 5.946 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.156 4.156 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.181 1.181 25 H -0.164 1.164 26 C -0.136 4.136 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.439 14.985 18.815 27.080 hybrid contribution -0.950 -1.222 -0.288 1.574 sum 11.490 13.763 18.528 25.782 Atomic orbital electron populations 1.20783 0.90467 1.03433 1.02131 1.20163 0.97017 0.93400 1.00244 1.21263 0.94749 0.97663 1.01066 1.21287 0.94203 0.98140 1.00455 1.19976 0.97417 0.92153 1.00174 1.20869 0.89442 1.04196 1.02446 1.20019 0.93651 0.95074 1.00456 1.20652 0.91718 0.83743 0.96906 0.90551 1.22692 1.03924 0.96477 0.91812 1.22801 0.96947 0.95274 1.00655 1.22716 1.00515 0.91804 0.88784 1.48502 1.50648 1.24131 1.11260 1.19600 0.79572 0.86411 0.80941 1.90698 1.60421 1.39779 1.52170 1.23207 1.02224 1.00378 0.99465 1.84733 1.64645 1.31573 1.13672 1.22434 1.35467 1.06854 1.02898 0.91996 1.25501 0.93167 0.96697 1.00228 1.70007 1.31981 1.26457 1.26882 0.85908 0.79316 0.81317 0.80083 1.18599 1.18072 1.16433 1.20814 0.94229 0.97334 1.01192 0.92183 0.91741 0.89575 0.84318 0.83761 0.91875 0.89533 0.90264 0.89998 0.87313 0.86870 0.89617 0.89821 0.90446 0.87293 0.87682 0.91291 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 10.01 71.23 0.71 -1.89 16 2 C -0.11 -2.94 5.88 -19.87 -0.12 -3.06 16 3 C -0.13 -3.05 9.70 22.27 0.22 -2.83 16 4 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 5 C -0.10 -2.25 5.88 -19.87 -0.12 -2.37 16 6 C -0.11 -1.87 9.24 71.24 0.66 -1.21 16 7 C -0.09 -2.43 4.31 -19.86 -0.09 -2.51 16 8 C 0.17 4.03 2.31 44.60 0.10 4.13 16 9 H 0.08 1.90 7.09 -2.39 -0.02 1.88 16 10 C -0.11 -1.52 6.05 31.78 0.19 -1.33 16 11 C -0.12 -1.40 7.09 31.99 0.23 -1.18 16 12 C 0.08 1.58 6.69 86.86 0.58 2.16 16 13 N -0.61 -16.77 2.14 -792.17 -1.69 -18.47 16 14 C 0.55 20.64 6.65 87.66 0.58 21.22 16 15 O -0.55 -25.44 15.54 -3.04 -0.05 -25.49 16 16 C -0.10 -4.11 5.16 71.24 0.37 -3.74 16 17 S -0.17 -9.05 18.55 -56.49 -1.05 -10.10 16 18 C -0.53 -31.37 10.04 67.95 0.68 -30.68 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.95 5.50 84.86 0.47 3.42 16 21 N -0.92 -56.17 13.97 21.65 0.30 -55.86 16 22 Si 0.91 45.78 27.74 68.60 1.90 47.68 16 23 H -0.26 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -12.18 6.74 99.48 0.67 -11.51 16 26 C -0.12 -3.49 8.33 22.27 0.19 -3.31 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 29 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 34 H 0.08 1.07 5.74 -2.39 -0.01 1.05 16 35 H 0.08 1.13 7.84 -2.39 -0.02 1.11 16 36 H 0.11 0.99 7.42 -2.38 -0.02 0.97 16 37 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.56 7.47 -2.39 -0.02 1.54 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.11 4.07 7.85 -2.39 -0.02 4.05 16 42 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.10 3.17 6.84 -2.91 -0.02 3.15 16 Total: -1.00 -77.02 367.24 5.23 -71.79 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.94 Total: 16.11 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.87 Total: -25.66 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.39 Total: -74.33 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -77.02 5.23 -71.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268482348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.010 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds