Wall clock time and date at job start Tue Mar 31 2020 12:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35771 * 116.99821 * 2 1 4 4 C 1.35589 * 126.08275 * 179.59777 * 3 2 1 5 5 C 1.41064 * 107.79982 * 180.10845 * 4 3 2 6 6 C 1.47693 * 125.98576 * 179.86246 * 5 4 3 7 7 O 1.21589 * 119.99858 * 359.72327 * 6 5 4 8 8 N 1.34774 * 120.00392 * 179.71493 * 6 5 4 9 9 C 1.40092 * 120.00239 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97407 * 0.24728 * 9 8 6 11 11 C 1.35234 * 107.86408 * 180.15241 * 10 9 8 12 12 C 1.50698 * 126.06472 * 179.88058 * 11 10 9 13 13 N 1.34972 * 107.86648 * 359.62341 * 11 10 9 14 14 C 1.46494 * 125.97382 * 180.21920 * 13 11 10 15 15 C 1.50698 * 109.47200 * 90.00148 * 14 13 11 16 16 H 1.08004 * 120.00115 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00296 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00365 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99601 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47293 * 90.00428 * 19 17 15 21 21 H 1.48500 * 109.47173 * 210.00583 * 19 17 15 22 22 H 1.48503 * 109.47176 * 330.00391 * 19 17 15 23 23 N 1.31234 * 125.97260 * 179.97438 * 9 8 6 24 24 N 1.31879 * 108.03180 * 359.60442 * 5 4 3 25 25 N 1.35845 * 126.08169 * 359.26313 * 3 2 1 26 26 C 1.46495 * 125.94855 * 0.03591 * 25 3 2 27 27 H 1.08995 * 109.46940 * 171.95864 * 1 2 3 28 28 H 1.09000 * 109.46909 * 291.95830 * 1 2 3 29 29 H 1.09002 * 109.46943 * 51.96277 * 1 2 3 30 30 H 1.08003 * 126.09867 * 359.97438 * 4 3 2 31 31 H 0.97006 * 119.99451 * 0.02562 * 8 6 5 32 32 H 1.07994 * 126.06651 * 0.04161 * 10 9 8 33 33 H 1.08996 * 109.47926 * 269.69120 * 12 11 10 34 34 H 1.09002 * 109.46936 * 149.69551 * 12 11 10 35 35 H 1.09001 * 109.47264 * 29.69596 * 12 11 10 36 36 H 1.09001 * 109.46993 * 210.00015 * 14 13 11 37 37 H 1.08999 * 109.47612 * 329.99772 * 14 13 11 38 38 H 0.96994 * 120.00187 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.47365 * 277.04660 * 26 25 3 40 40 H 1.08995 * 109.47586 * 37.05566 * 26 25 3 41 41 H 1.09005 * 109.47164 * 157.05701 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3843 1.4238 0.0077 5 6 3.5980 2.8182 0.0071 6 6 4.9108 3.4949 0.0169 7 8 5.9335 2.8375 0.0316 8 7 4.9751 4.8411 0.0094 9 6 6.2203 5.4830 0.0181 10 6 7.4741 4.8508 0.0298 11 6 8.4239 5.8134 0.0389 12 6 9.9140 5.5892 0.0553 13 7 7.8006 7.0104 0.0247 14 6 8.4546 8.3213 0.0235 15 6 8.6940 8.7619 -1.3976 16 1 8.3897 8.1286 -2.2179 17 6 9.3023 9.9731 -1.6507 18 7 9.5108 10.3579 -2.8908 19 14 9.8291 11.0681 -0.2320 20 1 11.2212 10.7330 0.1616 21 1 9.7626 12.4905 -0.6534 22 1 8.9222 10.8514 0.9238 23 7 6.4189 6.7802 0.0118 24 7 2.4204 3.4117 -0.0093 25 7 1.4305 2.4210 -0.0141 26 6 -0.0162 2.6508 -0.0313 27 1 -0.3633 -1.0175 -0.1438 28 1 -0.3633 0.3843 0.9531 29 1 -0.3633 0.6332 -0.8094 30 1 4.1504 0.6626 0.0153 31 1 4.1591 5.3656 -0.0021 32 1 7.6488 3.7851 0.0330 33 1 10.2631 5.5420 1.0868 34 1 10.4109 6.4118 -0.4590 35 1 10.1461 4.6517 -0.4500 36 1 7.8150 9.0469 0.5260 37 1 9.4076 8.2524 0.5480 38 1 9.9384 11.2101 -3.0689 39 1 -0.3838 2.5771 -1.0549 40 1 -0.5106 1.9017 0.5872 41 1 -0.2309 3.6449 0.3609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274689844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:37 Heat of formation + Delta-G solvation = 114.806098 kcal Electronic energy + Delta-G solvation = -25605.173207 eV Core-core repulsion = 21718.839687 eV Total energy + Delta-G solvation = -3886.333519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96610 -40.73489 -39.34358 -38.42157 -34.90839 -33.88205 -33.26953 -31.59558 -31.11879 -30.40086 -28.41599 -27.36910 -26.62203 -26.36860 -24.09159 -22.35571 -21.83471 -20.80934 -19.74978 -19.26247 -18.15006 -17.16401 -17.09044 -16.52118 -16.25342 -15.85046 -15.43454 -15.36724 -15.23980 -14.81981 -14.43523 -14.30281 -14.04034 -13.81121 -13.49041 -13.33018 -13.15387 -12.55143 -12.38198 -12.28051 -11.99316 -11.93904 -11.77314 -11.53267 -11.19650 -11.11186 -10.79384 -10.56060 -10.08612 -9.94175 -9.74914 -9.56506 -9.51526 -8.76540 -8.74501 -7.97705 -7.47177 -6.24122 -4.27240 1.05104 1.74496 1.86477 2.37219 2.67195 2.82069 3.14899 3.16694 3.25011 3.25704 3.66231 3.78715 3.91104 4.23560 4.24528 4.29920 4.54882 4.55653 4.69597 4.93548 4.97504 5.03925 5.08043 5.39101 5.53953 5.60279 5.66594 5.90078 6.06130 6.07536 6.19692 6.39233 6.47016 6.55301 6.61747 6.75482 6.88156 7.04760 7.31015 7.38566 7.60945 7.87810 8.17588 8.33486 8.58646 8.81919 9.30986 10.88343 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.002360 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.206307 B =11860.557525 C =12445.086756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.287 6.287 3 C 0.269 3.731 4 C -0.229 4.229 5 C 0.065 3.935 6 C 0.607 3.393 7 O -0.498 6.498 8 N -0.615 5.615 9 C 0.268 3.732 10 C -0.285 4.285 11 C 0.095 3.905 12 C -0.091 4.091 13 N -0.316 5.316 14 C 0.231 3.769 15 C -0.541 4.541 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.886 5.886 19 Si 0.872 3.128 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.263 1.263 23 N -0.313 5.313 24 N -0.247 5.247 25 N -0.391 5.391 26 C 0.076 3.924 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.169 0.831 31 H 0.418 0.582 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.269 0.731 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 -19.091 7.962 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.193 6.193 3 C 0.102 3.898 4 C -0.259 4.259 5 C -0.102 4.102 6 C 0.390 3.610 7 O -0.368 6.368 8 N -0.263 5.263 9 C 0.015 3.985 10 C -0.316 4.316 11 C -0.035 4.035 12 C -0.149 4.149 13 N -0.098 5.098 14 C 0.112 3.888 15 C -0.579 4.579 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.698 3.302 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.188 1.188 23 N -0.144 5.144 24 N -0.079 5.079 25 N -0.189 5.189 26 C -0.064 4.064 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.187 0.813 31 H 0.254 0.746 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.714 -17.364 7.824 26.701 hybrid contribution 0.037 -0.361 0.457 0.583 sum -18.677 -17.726 8.281 27.048 Atomic orbital electron populations 1.23669 0.77933 1.05422 1.01532 1.86319 1.21642 1.21460 1.89872 1.19548 0.91006 0.78920 1.00303 1.20329 0.92045 0.95377 1.18175 1.21613 0.92202 0.93100 1.03309 1.16690 0.86268 0.80929 0.77110 1.90766 1.33543 1.64763 1.47706 1.42215 1.06895 1.05812 1.71362 1.18898 0.85634 0.90931 1.03047 1.21283 0.88776 1.00764 1.20795 1.21064 0.96197 0.85661 1.00626 1.20410 0.88306 1.03693 1.02491 1.48537 1.01624 1.06665 1.52953 1.20001 0.92122 0.76945 0.99708 1.21189 1.40939 1.05371 0.90411 0.90053 1.24811 0.94907 0.97045 0.95785 1.69869 1.41925 1.21897 1.18625 0.86906 0.79727 0.80686 0.82851 1.19606 1.20532 1.18780 1.77287 0.95048 1.12846 1.29196 1.77761 0.95063 1.11091 1.23940 1.49062 1.06920 1.02908 1.59987 1.22551 0.74457 1.05737 1.03688 0.87228 0.91804 0.91670 0.81349 0.74615 0.81981 0.91033 0.89833 0.90269 0.93174 0.93589 0.92136 0.90171 0.88584 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.42 101.05 0.95 0.98 16 2 O -0.29 -2.37 10.57 -19.02 -0.20 -2.57 16 3 C 0.27 2.79 7.78 -16.72 -0.13 2.66 16 4 C -0.23 -2.84 10.59 -39.46 -0.42 -3.26 16 5 C 0.07 0.91 7.09 -82.91 -0.59 0.32 16 6 C 0.61 9.96 7.79 -12.40 -0.10 9.86 16 7 O -0.50 -9.16 14.02 5.29 0.07 -9.09 16 8 N -0.62 -10.58 5.44 -12.03 -0.07 -10.64 16 9 C 0.27 5.60 8.11 -154.44 -1.25 4.35 16 10 C -0.29 -5.90 9.52 -39.83 -0.38 -6.28 16 11 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 12 C -0.09 -1.52 9.89 36.00 0.36 -1.16 16 13 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 14 C 0.23 5.61 4.88 -5.20 -0.03 5.58 16 15 C -0.54 -15.23 9.94 -34.44 -0.34 -15.58 16 16 H 0.08 2.60 8.06 -52.48 -0.42 2.17 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 19 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 23 N -0.31 -7.31 12.59 31.43 0.40 -6.92 16 24 N -0.25 -3.13 12.26 33.34 0.41 -2.72 16 25 N -0.39 -3.78 4.03 -68.19 -0.28 -4.05 16 26 C 0.08 0.34 9.59 59.84 0.57 0.92 16 27 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.06 0.12 6.45 -51.93 -0.34 -0.21 16 29 H 0.06 0.14 5.91 -51.93 -0.31 -0.16 16 30 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.42 6.34 8.52 -40.82 -0.35 5.99 16 32 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.50 7.71 -51.93 -0.40 1.09 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 37 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.08 0.24 7.58 -51.93 -0.39 -0.15 16 40 H 0.10 0.18 4.68 -51.93 -0.24 -0.06 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -35.71 349.71 -5.30 -41.01 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.78 Total: 5.54 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.02 Total: 1.92 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 1.03 Total: -57.63 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.13 Total: -11.66 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.71 -5.30 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274689844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.817 kcal (2) G-P(sol) polarization free energy of solvation -35.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds