Wall clock time and date at job start Tue Mar 31 2020 12:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35771 * 116.99821 * 2 1 4 4 C 1.35589 * 126.08275 * 179.59777 * 3 2 1 5 5 C 1.41064 * 107.79982 * 180.10845 * 4 3 2 6 6 C 1.47693 * 125.98576 * 179.86246 * 5 4 3 7 7 O 1.21589 * 119.99858 * 359.72327 * 6 5 4 8 8 N 1.34774 * 120.00392 * 179.71493 * 6 5 4 9 9 C 1.40092 * 120.00239 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97407 * 0.24728 * 9 8 6 11 11 C 1.35234 * 107.86408 * 180.15241 * 10 9 8 12 12 C 1.50698 * 126.06472 * 179.88058 * 11 10 9 13 13 N 1.34972 * 107.86648 * 359.62341 * 11 10 9 14 14 C 1.46494 * 125.97382 * 180.21920 * 13 11 10 15 15 C 1.50698 * 109.47200 * 90.00148 * 14 13 11 16 16 H 1.08004 * 120.00115 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00296 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00365 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99601 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47293 * 90.00428 * 19 17 15 21 21 H 1.48500 * 109.47173 * 210.00583 * 19 17 15 22 22 H 1.48503 * 109.47176 * 330.00391 * 19 17 15 23 23 N 1.31234 * 125.97260 * 179.97438 * 9 8 6 24 24 N 1.31879 * 108.03180 * 359.60442 * 5 4 3 25 25 N 1.35845 * 126.08169 * 359.26313 * 3 2 1 26 26 C 1.46495 * 125.94855 * 0.03591 * 25 3 2 27 27 H 1.08995 * 109.46940 * 171.95864 * 1 2 3 28 28 H 1.09000 * 109.46909 * 291.95830 * 1 2 3 29 29 H 1.09002 * 109.46943 * 51.96277 * 1 2 3 30 30 H 1.08003 * 126.09867 * 359.97438 * 4 3 2 31 31 H 0.97006 * 119.99451 * 0.02562 * 8 6 5 32 32 H 1.07994 * 126.06651 * 0.04161 * 10 9 8 33 33 H 1.08996 * 109.47926 * 269.69120 * 12 11 10 34 34 H 1.09002 * 109.46936 * 149.69551 * 12 11 10 35 35 H 1.09001 * 109.47264 * 29.69596 * 12 11 10 36 36 H 1.09001 * 109.46993 * 210.00015 * 14 13 11 37 37 H 1.08999 * 109.47612 * 329.99772 * 14 13 11 38 38 H 0.96994 * 120.00187 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.47365 * 277.04660 * 26 25 3 40 40 H 1.08995 * 109.47586 * 37.05566 * 26 25 3 41 41 H 1.09005 * 109.47164 * 157.05701 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3843 1.4238 0.0077 5 6 3.5980 2.8182 0.0071 6 6 4.9108 3.4949 0.0169 7 8 5.9335 2.8375 0.0316 8 7 4.9751 4.8411 0.0094 9 6 6.2203 5.4830 0.0181 10 6 7.4741 4.8508 0.0298 11 6 8.4239 5.8134 0.0389 12 6 9.9140 5.5892 0.0553 13 7 7.8006 7.0104 0.0247 14 6 8.4546 8.3213 0.0235 15 6 8.6940 8.7619 -1.3976 16 1 8.3897 8.1286 -2.2179 17 6 9.3023 9.9731 -1.6507 18 7 9.5108 10.3579 -2.8908 19 14 9.8291 11.0681 -0.2320 20 1 11.2212 10.7330 0.1616 21 1 9.7626 12.4905 -0.6534 22 1 8.9222 10.8514 0.9238 23 7 6.4189 6.7802 0.0118 24 7 2.4204 3.4117 -0.0093 25 7 1.4305 2.4210 -0.0141 26 6 -0.0162 2.6508 -0.0313 27 1 -0.3633 -1.0175 -0.1438 28 1 -0.3633 0.3843 0.9531 29 1 -0.3633 0.6332 -0.8094 30 1 4.1504 0.6626 0.0153 31 1 4.1591 5.3656 -0.0021 32 1 7.6488 3.7851 0.0330 33 1 10.2631 5.5420 1.0868 34 1 10.4109 6.4118 -0.4590 35 1 10.1461 4.6517 -0.4500 36 1 7.8150 9.0469 0.5260 37 1 9.4076 8.2524 0.5480 38 1 9.9384 11.2101 -3.0689 39 1 -0.3838 2.5771 -1.0549 40 1 -0.5106 1.9017 0.5872 41 1 -0.2309 3.6449 0.3609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274689844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:36 Heat of formation + Delta-G solvation = 87.350241 kcal Electronic energy + Delta-G solvation = -25606.363782 eV Core-core repulsion = 21718.839687 eV Total energy + Delta-G solvation = -3887.524095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.82910 -42.30067 -40.60020 -39.20845 -36.45037 -35.27743 -34.54717 -33.25581 -32.80933 -31.23590 -29.36744 -28.80488 -27.89902 -27.29230 -25.35684 -24.11437 -22.61794 -22.12313 -21.28617 -20.56423 -19.22248 -19.12941 -17.83605 -17.76619 -17.42745 -17.16871 -16.68583 -16.40055 -16.25209 -16.18785 -15.61392 -15.41648 -15.25630 -14.91725 -14.64830 -14.46071 -14.07182 -13.92216 -13.88763 -13.75312 -13.63404 -13.26319 -12.85860 -12.54931 -12.45654 -12.34870 -12.26984 -11.83745 -11.83446 -11.64315 -11.47629 -11.26350 -10.88174 -10.29267 -9.62881 -9.57341 -9.15350 -8.39286 -6.50605 0.00056 0.86638 0.98787 1.11665 1.22301 1.36300 1.40079 1.49534 1.76511 1.92832 2.27993 2.30662 2.35260 2.92851 2.96654 3.65264 3.84877 4.00393 4.06838 4.10649 4.24215 4.28951 4.36938 4.44346 4.52095 4.55634 4.61556 4.71434 4.74141 4.79714 4.83551 4.94634 4.98162 5.10387 5.17813 5.23365 5.24949 5.80432 5.97400 6.00116 6.20730 6.30395 6.36842 6.53247 6.82034 6.95251 7.13191 8.77400 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.002360 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.206307 B =11860.557525 C =12445.086756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.297 6.297 3 C 0.283 3.717 4 C -0.253 4.253 5 C 0.047 3.953 6 C 0.611 3.389 7 O -0.521 6.521 8 N -0.612 5.612 9 C 0.273 3.727 10 C -0.297 4.297 11 C 0.094 3.906 12 C -0.088 4.088 13 N -0.340 5.340 14 C 0.241 3.759 15 C -0.551 4.551 16 H 0.023 0.977 17 C 0.021 3.979 18 N -0.937 5.937 19 Si 0.952 3.048 20 H -0.249 1.249 21 H -0.279 1.279 22 H -0.245 1.245 23 N -0.352 5.352 24 N -0.261 5.261 25 N -0.379 5.379 26 C 0.060 3.940 27 H 0.132 0.868 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.425 0.575 32 H 0.171 0.829 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.274 0.726 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 -20.048 9.978 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.203 6.203 3 C 0.115 3.885 4 C -0.283 4.283 5 C -0.119 4.119 6 C 0.396 3.604 7 O -0.393 6.393 8 N -0.261 5.261 9 C 0.019 3.981 10 C -0.327 4.327 11 C -0.036 4.036 12 C -0.146 4.146 13 N -0.122 5.122 14 C 0.121 3.879 15 C -0.589 4.589 16 H 0.042 0.958 17 C -0.179 4.179 18 N -0.576 5.576 19 Si 0.772 3.228 20 H -0.173 1.173 21 H -0.204 1.204 22 H -0.168 1.168 23 N -0.183 5.183 24 N -0.094 5.094 25 N -0.177 5.177 26 C -0.078 4.078 27 H 0.150 0.850 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.263 0.737 32 H 0.188 0.812 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.146 0.854 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.106 -18.359 9.844 28.952 hybrid contribution 0.199 -0.274 -0.273 0.435 sum -19.908 -18.634 9.571 28.899 Atomic orbital electron populations 1.24120 0.75177 1.07546 1.03181 1.86348 1.24482 1.20009 1.89421 1.19434 0.90614 0.79883 0.98572 1.20401 0.93465 0.94750 1.19667 1.21159 0.91377 0.93580 1.05765 1.17058 0.87217 0.80316 0.75813 1.90726 1.34818 1.65089 1.48669 1.42299 1.06018 1.06248 1.71495 1.19211 0.87157 0.90514 1.01216 1.21483 0.88800 1.01132 1.21305 1.21792 0.98234 0.84763 0.98853 1.20569 0.85272 1.04143 1.04658 1.48477 1.01932 1.07015 1.54799 1.19808 0.93359 0.77640 0.97084 1.21251 1.41292 1.05218 0.91155 0.95845 1.25847 0.94440 0.98510 0.99090 1.70033 1.43112 1.22823 1.21587 0.85668 0.80482 0.77698 0.78922 1.17282 1.20406 1.16816 1.77196 0.95547 1.14192 1.31318 1.77676 0.95247 1.12272 1.24164 1.49420 1.08155 1.02125 1.58025 1.23100 0.71570 1.07301 1.05861 0.85017 0.89977 0.90153 0.81490 0.73675 0.81196 0.87804 0.91215 0.88124 0.93224 0.90681 0.91730 0.88110 0.85425 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.02 9.42 113.37 1.07 1.05 16 2 O -0.30 -4.20 10.57 -90.99 -0.96 -5.17 16 3 C 0.28 5.44 7.78 83.46 0.65 6.09 16 4 C -0.25 -6.24 10.59 22.35 0.24 -6.00 16 5 C 0.05 1.31 7.09 42.33 0.30 1.61 16 6 C 0.61 20.57 7.79 86.74 0.68 21.25 16 7 O -0.52 -19.69 14.02 -4.00 -0.06 -19.74 16 8 N -0.61 -21.64 5.44 -310.24 -1.69 -23.33 16 9 C 0.27 11.71 8.11 133.35 1.08 12.79 16 10 C -0.30 -12.41 9.52 22.11 0.21 -12.20 16 11 C 0.09 3.92 6.92 41.38 0.29 4.21 16 12 C -0.09 -2.84 9.89 71.24 0.70 -2.13 16 13 N -0.34 -16.22 3.59 -338.47 -1.22 -17.43 16 14 C 0.24 11.66 4.88 85.63 0.42 12.08 16 15 C -0.55 -32.07 9.94 25.60 0.25 -31.82 16 16 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 17 C 0.02 1.18 5.47 84.66 0.46 1.64 16 18 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 19 Si 0.95 41.15 27.47 68.60 1.88 43.04 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.24 -9.81 6.54 99.48 0.65 -9.15 16 23 N -0.35 -16.91 12.59 -54.48 -0.69 -17.59 16 24 N -0.26 -6.44 12.26 -48.43 -0.59 -7.04 16 25 N -0.38 -6.59 4.03 -480.57 -1.94 -8.53 16 26 C 0.06 0.35 9.59 127.77 1.22 1.57 16 27 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.08 -0.03 6.45 -2.39 -0.02 -0.04 16 29 H 0.08 0.03 5.91 -2.39 -0.01 0.02 16 30 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.43 13.34 8.52 -92.70 -0.79 12.55 16 32 H 0.17 6.79 5.91 -2.91 -0.02 6.77 16 33 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.07 2.45 7.71 -2.39 -0.02 2.43 16 35 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.05 2.39 7.20 -2.39 -0.02 2.38 16 37 H 0.08 3.18 7.07 -2.39 -0.02 3.17 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.10 0.24 7.58 -2.38 -0.02 0.23 16 40 H 0.13 -0.05 4.68 -2.39 -0.01 -0.06 16 41 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -81.93 349.71 2.87 -79.07 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.25 Total: 23.86 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.57 Total: 10.13 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -5.82 Total: -131.19 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.02 Total: -24.91 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.04 kcal Total: -81.93 2.87 -79.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274689844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.417 kcal (2) G-P(sol) polarization free energy of solvation -81.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds