Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46873 * 2 1 4 4 C 1.53000 * 109.47166 * 240.00207 * 2 1 3 5 5 C 1.52995 * 109.47434 * 119.99984 * 2 1 3 6 6 H 1.08997 * 110.37482 * 186.06192 * 5 2 1 7 7 C 1.53735 * 110.41236 * 63.69825 * 5 2 1 8 8 N 1.46538 * 105.20082 * 241.10492 * 7 5 2 9 9 C 1.34777 * 124.98453 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99264 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00602 * 180.28092 * 9 8 7 12 12 S 1.80996 * 109.47555 * 179.72404 * 11 9 8 13 13 C 1.76195 * 100.00291 * 179.97438 * 12 11 9 14 14 H 1.08006 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.38792 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00658 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99772 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46910 * 90.00462 * 17 15 13 19 19 H 1.48497 * 109.47056 * 209.99983 * 17 15 13 20 20 H 1.48500 * 109.46968 * 330.00170 * 17 15 13 21 21 C 1.39839 * 110.04131 * 0.26855 * 8 7 5 22 22 C 1.39631 * 129.33357 * 180.42887 * 21 8 7 23 23 C 1.37840 * 120.28292 * 179.62425 * 22 21 8 24 24 C 1.38300 * 120.22124 * 359.70932 * 23 22 21 25 25 C 1.38223 * 119.82863 * 0.02562 * 24 23 22 26 26 C 1.38184 * 120.15236 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46967 * 299.99746 * 1 2 3 28 28 H 1.09000 * 109.46843 * 60.00028 * 1 2 3 29 29 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47213 * 172.31602 * 3 2 1 31 31 H 1.08996 * 109.47380 * 292.31862 * 3 2 1 32 32 H 1.09001 * 109.47126 * 52.31880 * 3 2 1 33 33 H 1.08999 * 109.46996 * 299.99812 * 4 2 1 34 34 H 1.09000 * 109.47432 * 60.00125 * 4 2 1 35 35 H 1.09003 * 109.46872 * 179.97438 * 4 2 1 36 36 H 1.09008 * 110.29668 * 122.17809 * 7 5 2 37 37 H 1.08998 * 110.29810 * 0.04155 * 7 5 2 38 38 H 1.09005 * 109.47185 * 299.72781 * 11 9 8 39 39 H 1.09008 * 109.47232 * 59.72259 * 11 9 8 40 40 H 0.96996 * 120.00235 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.86023 * 359.32944 * 22 21 8 42 42 H 1.08001 * 119.88837 * 179.73459 * 23 22 21 43 43 H 1.08006 * 120.08310 * 180.02562 * 24 23 22 44 44 H 1.08007 * 119.92107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1245 -0.6373 1.3196 7 6 1.6170 -2.1990 1.2255 8 7 0.7779 -2.3775 2.4135 9 6 0.1926 -3.5351 2.7794 10 8 0.3447 -4.5313 2.1043 11 6 -0.6553 -3.5905 4.0239 12 16 -1.3026 -5.2670 4.2389 13 6 -2.2275 -5.0500 5.7228 14 1 -2.2583 -4.0833 6.2035 15 6 -2.9167 -6.1212 6.2740 16 7 -3.6081 -5.9590 7.3823 17 14 -2.8641 -7.7931 5.4423 18 1 -1.7201 -8.5754 5.9754 19 1 -4.1301 -8.5205 5.7129 20 1 -2.7005 -7.6123 3.9774 21 6 0.6688 -1.1693 3.1091 22 6 -0.0212 -0.8870 4.2897 23 6 0.0036 0.3841 4.8223 24 6 0.7175 1.3883 4.1941 25 6 1.4075 1.1151 3.0280 26 6 1.3855 -0.1577 2.4904 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1213 1.4457 0.1374 31 1 1.7932 1.9152 -0.9506 32 1 1.5688 1.9945 0.8133 33 1 1.6767 -1.7489 -1.2493 34 1 1.6768 -0.2074 -2.1393 35 1 3.1301 -0.7208 -1.2494 36 1 2.4937 -2.8443 1.2814 37 1 1.0451 -2.4141 0.3228 38 1 -0.0490 -3.3214 4.8889 39 1 -1.4851 -2.8899 3.9297 40 1 -4.0894 -6.7078 7.7677 41 1 -0.5807 -1.6667 4.7851 42 1 -0.5359 0.5965 5.7335 43 1 0.7358 2.3834 4.6136 44 1 1.9659 1.8981 2.5364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278395131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -5.197674 kcal Electronic energy + Delta-G solvation = -24924.135651 eV Core-core repulsion = 21546.598840 eV Total energy + Delta-G solvation = -3377.536810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59485 -38.80786 -37.60636 -35.61245 -32.47967 -32.21043 -29.98716 -29.70332 -28.57071 -27.48936 -27.23505 -25.66003 -23.57924 -23.17238 -21.69653 -19.86799 -18.94383 -17.86750 -16.82445 -16.58581 -16.41219 -15.85395 -15.11645 -15.00074 -14.87117 -14.48343 -14.29875 -14.10533 -13.74054 -13.46865 -13.28626 -12.86184 -12.81617 -12.65622 -12.59056 -12.32572 -12.10680 -12.05970 -11.82935 -11.64661 -11.40595 -11.17991 -11.03907 -10.98775 -10.81892 -10.66093 -10.47893 -10.25819 -9.91593 -9.76947 -9.03916 -8.85970 -8.53916 -7.80368 -6.98539 -6.32165 -4.05279 1.22657 1.30097 2.51649 2.78315 3.05175 3.30570 3.47400 3.51138 3.72040 4.14374 4.25198 4.29835 4.44968 4.50845 4.65924 4.83464 4.92670 4.94287 5.06674 5.07348 5.09959 5.19321 5.34898 5.36743 5.40196 5.46400 5.49530 5.54050 5.54068 5.60115 5.63264 5.69709 5.78328 5.83850 5.85820 5.92768 6.00588 6.06613 6.13072 6.17631 6.37097 6.41032 6.52296 6.87857 7.44067 7.90646 8.13377 8.37945 9.13629 10.76907 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.003643 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.880688 B = 7683.712644 C = 8751.302685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.043 4.043 6 H 0.094 0.906 7 C 0.108 3.892 8 N -0.555 5.555 9 C 0.541 3.459 10 O -0.496 6.496 11 C -0.126 4.126 12 S -0.142 6.142 13 C -0.521 4.521 14 H 0.089 0.911 15 C 0.097 3.903 16 N -0.878 5.878 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.235 1.235 21 C 0.156 3.844 22 C -0.160 4.160 23 C -0.083 4.083 24 C -0.149 4.149 25 C -0.078 4.078 26 C -0.127 4.127 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 17.862 -13.070 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.203 4.203 4 C -0.205 4.205 5 C -0.062 4.062 6 H 0.112 0.888 7 C -0.013 4.013 8 N -0.279 5.279 9 C 0.331 3.669 10 O -0.369 6.369 11 C -0.276 4.276 12 S 0.085 5.915 13 C -0.669 4.669 14 H 0.107 0.893 15 C -0.112 4.112 16 N -0.515 5.515 17 Si 0.680 3.320 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.160 1.160 21 C 0.059 3.941 22 C -0.181 4.181 23 C -0.102 4.102 24 C -0.168 4.168 25 C -0.096 4.096 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.104 16.075 -13.981 24.503 hybrid contribution -0.337 0.338 0.779 0.914 sum 11.767 16.413 -13.201 24.127 Atomic orbital electron populations 1.21933 0.94089 1.02172 1.01944 1.20497 0.96130 0.95490 0.93454 1.22009 1.00893 0.95189 1.02165 1.21987 1.01118 1.00636 0.96743 1.20800 1.00352 0.92616 0.92419 0.88758 1.22211 0.94914 0.96033 0.88178 1.46024 1.48681 1.07920 1.25263 1.20291 0.78936 0.81131 0.86546 1.90726 1.59375 1.33117 1.53654 1.23683 1.01436 1.05319 0.97130 1.84805 1.63480 1.07644 1.35605 1.22267 1.34767 1.01352 1.08482 0.89253 1.24691 0.93486 0.98853 0.94125 1.69931 1.30283 1.32478 1.18777 0.86753 0.78550 0.83951 0.82717 1.19159 1.19847 1.15951 1.18377 0.96811 0.85540 0.93340 1.21314 1.02557 0.98884 0.95329 1.20933 0.97870 0.91969 0.99436 1.21001 0.99934 0.99454 0.96444 1.20457 0.99104 0.94566 0.95497 1.19829 1.01908 0.93713 0.97599 0.92078 0.92662 0.92616 0.92588 0.92533 0.91792 0.92141 0.92295 0.92391 0.90168 0.89462 0.87736 0.87702 0.91872 0.84040 0.85332 0.85832 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.90 37.16 0.29 -1.09 16 2 C -0.06 -0.45 0.55 -154.51 -0.09 -0.54 16 3 C -0.15 -0.98 7.94 37.16 0.29 -0.68 16 4 C -0.15 -1.08 8.16 37.16 0.30 -0.78 16 5 C -0.04 -0.42 2.42 -91.14 -0.22 -0.64 16 6 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 7 C 0.11 1.32 5.65 -3.64 -0.02 1.30 16 8 N -0.55 -8.44 3.13 -112.90 -0.35 -8.80 16 9 C 0.54 10.28 7.82 -10.99 -0.09 10.19 16 10 O -0.50 -10.88 16.15 5.55 0.09 -10.79 16 11 C -0.13 -2.52 3.98 36.00 0.14 -2.38 16 12 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 13 C -0.52 -14.89 10.04 30.94 0.31 -14.57 16 14 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 15 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 17 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.24 -5.96 6.74 56.52 0.38 -5.57 16 21 C 0.16 2.13 6.59 -83.57 -0.55 1.58 16 22 C -0.16 -2.18 8.88 -39.21 -0.35 -2.53 16 23 C -0.08 -0.94 10.02 -39.70 -0.40 -1.34 16 24 C -0.15 -1.45 10.06 -39.56 -0.40 -1.84 16 25 C -0.08 -0.74 8.86 -39.61 -0.35 -1.09 16 26 C -0.13 -1.42 3.92 -104.27 -0.41 -1.82 16 27 H 0.06 0.65 7.02 -51.93 -0.36 0.28 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.62 6.75 -51.93 -0.35 0.27 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 5.38 -51.93 -0.28 0.16 16 33 H 0.06 0.48 6.29 -51.93 -0.33 0.16 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.09 1.05 5.07 -51.93 -0.26 0.79 16 38 H 0.10 1.99 6.91 -51.91 -0.36 1.63 16 39 H 0.10 1.99 6.92 -51.91 -0.36 1.63 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.14 2.10 4.21 -52.49 -0.22 1.88 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 0.91 6.24 -52.48 -0.33 0.58 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -32.49 352.99 -8.73 -41.22 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.23 Total: 0.72 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.62 Total: -13.51 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.42 Total: -34.32 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.49 -8.73 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278395131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds