Wall clock time and date at job start Tue Mar 31 2020 13:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46873 * 2 1 4 4 C 1.53000 * 109.47166 * 240.00207 * 2 1 3 5 5 C 1.52995 * 109.47434 * 119.99984 * 2 1 3 6 6 H 1.08997 * 110.37482 * 186.06192 * 5 2 1 7 7 C 1.53735 * 110.41236 * 63.69825 * 5 2 1 8 8 N 1.46538 * 105.20082 * 241.10492 * 7 5 2 9 9 C 1.34777 * 124.98453 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99264 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00602 * 180.28092 * 9 8 7 12 12 S 1.80996 * 109.47555 * 179.72404 * 11 9 8 13 13 C 1.76195 * 100.00291 * 179.97438 * 12 11 9 14 14 H 1.08006 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.38792 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00658 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99772 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46910 * 90.00462 * 17 15 13 19 19 H 1.48497 * 109.47056 * 209.99983 * 17 15 13 20 20 H 1.48500 * 109.46968 * 330.00170 * 17 15 13 21 21 C 1.39839 * 110.04131 * 0.26855 * 8 7 5 22 22 C 1.39631 * 129.33357 * 180.42887 * 21 8 7 23 23 C 1.37840 * 120.28292 * 179.62425 * 22 21 8 24 24 C 1.38300 * 120.22124 * 359.70932 * 23 22 21 25 25 C 1.38223 * 119.82863 * 0.02562 * 24 23 22 26 26 C 1.38184 * 120.15236 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46967 * 299.99746 * 1 2 3 28 28 H 1.09000 * 109.46843 * 60.00028 * 1 2 3 29 29 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47213 * 172.31602 * 3 2 1 31 31 H 1.08996 * 109.47380 * 292.31862 * 3 2 1 32 32 H 1.09001 * 109.47126 * 52.31880 * 3 2 1 33 33 H 1.08999 * 109.46996 * 299.99812 * 4 2 1 34 34 H 1.09000 * 109.47432 * 60.00125 * 4 2 1 35 35 H 1.09003 * 109.46872 * 179.97438 * 4 2 1 36 36 H 1.09008 * 110.29668 * 122.17809 * 7 5 2 37 37 H 1.08998 * 110.29810 * 0.04155 * 7 5 2 38 38 H 1.09005 * 109.47185 * 299.72781 * 11 9 8 39 39 H 1.09008 * 109.47232 * 59.72259 * 11 9 8 40 40 H 0.96996 * 120.00235 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.86023 * 359.32944 * 22 21 8 42 42 H 1.08001 * 119.88837 * 179.73459 * 23 22 21 43 43 H 1.08006 * 120.08310 * 180.02562 * 24 23 22 44 44 H 1.08007 * 119.92107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1245 -0.6373 1.3196 7 6 1.6170 -2.1990 1.2255 8 7 0.7779 -2.3775 2.4135 9 6 0.1926 -3.5351 2.7794 10 8 0.3447 -4.5313 2.1043 11 6 -0.6553 -3.5905 4.0239 12 16 -1.3026 -5.2670 4.2389 13 6 -2.2275 -5.0500 5.7228 14 1 -2.2583 -4.0833 6.2035 15 6 -2.9167 -6.1212 6.2740 16 7 -3.6081 -5.9590 7.3823 17 14 -2.8641 -7.7931 5.4423 18 1 -1.7201 -8.5754 5.9754 19 1 -4.1301 -8.5205 5.7129 20 1 -2.7005 -7.6123 3.9774 21 6 0.6688 -1.1693 3.1091 22 6 -0.0212 -0.8870 4.2897 23 6 0.0036 0.3841 4.8223 24 6 0.7175 1.3883 4.1941 25 6 1.4075 1.1151 3.0280 26 6 1.3855 -0.1577 2.4904 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1213 1.4457 0.1374 31 1 1.7932 1.9152 -0.9506 32 1 1.5688 1.9945 0.8133 33 1 1.6767 -1.7489 -1.2493 34 1 1.6768 -0.2074 -2.1393 35 1 3.1301 -0.7208 -1.2494 36 1 2.4937 -2.8443 1.2814 37 1 1.0451 -2.4141 0.3228 38 1 -0.0490 -3.3214 4.8889 39 1 -1.4851 -2.8899 3.9297 40 1 -4.0894 -6.7078 7.7677 41 1 -0.5807 -1.6667 4.7851 42 1 -0.5359 0.5965 5.7335 43 1 0.7358 2.3834 4.6136 44 1 1.9659 1.8981 2.5364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278395131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:49 Heat of formation + Delta-G solvation = -23.068134 kcal Electronic energy + Delta-G solvation = -24924.910572 eV Core-core repulsion = 21546.598840 eV Total energy + Delta-G solvation = -3378.311731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62052 -40.13264 -38.39717 -36.70591 -34.72089 -33.29879 -31.11021 -30.71194 -29.69350 -28.17893 -27.91212 -27.83346 -24.56791 -24.21065 -22.57820 -21.13339 -20.01664 -19.49450 -18.25758 -17.67195 -17.50531 -17.18829 -16.86860 -16.27273 -16.05400 -15.55878 -15.44467 -15.01547 -14.94258 -14.84429 -14.56364 -14.36722 -13.85269 -13.54937 -13.43386 -13.37447 -13.32680 -13.06006 -13.01368 -12.87705 -12.62259 -12.46768 -12.40595 -12.10408 -11.88502 -11.72289 -11.54786 -11.31964 -11.26094 -11.24372 -11.20765 -10.58888 -9.74434 -9.10418 -8.84515 -8.55585 -6.28982 0.21503 0.40675 0.82802 1.28264 1.36766 1.39302 1.47268 1.79205 2.20983 2.56700 2.81238 2.82761 3.16425 3.40044 3.54599 3.71450 3.95274 3.96718 4.02618 4.16383 4.18138 4.24612 4.30918 4.39142 4.42128 4.54018 4.60099 4.66740 4.74987 4.84523 4.91318 4.96073 4.98415 5.09812 5.13909 5.16607 5.24018 5.37776 5.42134 5.48248 5.50751 5.56102 5.63826 5.66564 5.97545 6.06840 6.22701 6.70836 6.88720 8.56827 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.003643 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.880688 B = 7683.712644 C = 8751.302685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.035 4.035 6 H 0.117 0.883 7 C 0.101 3.899 8 N -0.548 5.548 9 C 0.541 3.459 10 O -0.536 6.536 11 C -0.106 4.106 12 S -0.169 6.169 13 C -0.530 4.530 14 H 0.063 0.937 15 C 0.049 3.951 16 N -0.913 5.913 17 Si 0.913 3.087 18 H -0.261 1.261 19 H -0.256 1.256 20 H -0.238 1.238 21 C 0.118 3.882 22 C -0.180 4.180 23 C -0.094 4.094 24 C -0.135 4.135 25 C -0.073 4.073 26 C -0.117 4.117 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.278 0.722 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.157 0.843 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 20.402 -14.526 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.200 4.200 4 C -0.204 4.204 5 C -0.054 4.054 6 H 0.135 0.865 7 C -0.020 4.020 8 N -0.272 5.272 9 C 0.331 3.669 10 O -0.413 6.413 11 C -0.256 4.256 12 S 0.058 5.942 13 C -0.678 4.678 14 H 0.081 0.919 15 C -0.157 4.157 16 N -0.551 5.551 17 Si 0.734 3.266 18 H -0.185 1.185 19 H -0.180 1.180 20 H -0.162 1.162 21 C 0.023 3.977 22 C -0.201 4.201 23 C -0.112 4.112 24 C -0.153 4.153 25 C -0.091 4.091 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.996 18.680 -15.428 27.979 hybrid contribution -0.877 -0.188 1.249 1.537 sum 13.119 18.492 -14.179 26.741 Atomic orbital electron populations 1.21918 0.95514 1.00582 1.01943 1.20482 0.94831 0.96752 0.92940 1.21994 1.01746 0.93478 1.02770 1.21983 1.02000 0.99825 0.96598 1.20875 1.01473 0.90476 0.92546 0.86473 1.22477 0.94407 0.98285 0.86804 1.45890 1.47941 1.07268 1.26068 1.19926 0.79162 0.81987 0.85856 1.90697 1.61236 1.34656 1.54678 1.23619 1.01937 1.01458 0.98633 1.84646 1.63409 1.12351 1.33769 1.22382 1.35283 1.00449 1.09666 0.91910 1.25527 0.93105 1.02322 0.94699 1.70004 1.31135 1.33932 1.20034 0.85897 0.79379 0.79782 0.81507 1.18539 1.17993 1.16175 1.18611 0.99139 0.85625 0.94308 1.21292 1.03288 0.99580 0.95910 1.21157 0.98478 0.91469 1.00108 1.21423 0.97849 1.00249 0.95807 1.20862 0.98581 0.94439 0.95210 1.20081 1.00686 0.93658 0.97510 0.93164 0.91513 0.95017 0.91130 0.91706 0.91642 0.93468 0.91454 0.90976 0.89968 0.89700 0.87042 0.87106 0.91205 0.86413 0.84203 0.82530 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.90 71.98 0.57 -1.97 16 2 C -0.05 -0.67 0.55 -52.18 -0.03 -0.70 16 3 C -0.14 -1.30 7.94 71.98 0.57 -0.73 16 4 C -0.15 -1.78 8.16 71.98 0.59 -1.19 16 5 C -0.04 -0.59 2.42 -11.13 -0.03 -0.62 16 6 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 7 C 0.10 2.42 5.65 86.62 0.49 2.90 16 8 N -0.55 -16.95 3.13 -629.48 -1.97 -18.92 16 9 C 0.54 21.32 7.82 87.65 0.69 22.01 16 10 O -0.54 -24.36 16.15 -3.06 -0.05 -24.41 16 11 C -0.11 -4.46 3.98 71.23 0.28 -4.18 16 12 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 13 C -0.53 -31.41 10.04 67.95 0.68 -30.73 16 14 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 15 C 0.05 2.92 5.50 84.86 0.47 3.39 16 16 N -0.91 -55.84 13.97 21.65 0.30 -55.53 16 17 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 18 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 21 C 0.12 3.19 6.59 38.28 0.25 3.44 16 22 C -0.18 -4.96 8.88 22.51 0.20 -4.76 16 23 C -0.09 -1.99 10.02 22.19 0.22 -1.77 16 24 C -0.13 -2.13 10.06 22.28 0.22 -1.91 16 25 C -0.07 -1.11 8.86 22.25 0.20 -0.91 16 26 C -0.12 -2.32 3.92 -19.64 -0.08 -2.40 16 27 H 0.05 0.99 7.02 -2.39 -0.02 0.97 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.03 0.71 6.75 -2.39 -0.02 0.69 16 30 H 0.07 0.48 8.13 -2.38 -0.02 0.46 16 31 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.06 0.58 5.38 -2.39 -0.01 0.57 16 33 H 0.05 0.70 6.29 -2.39 -0.02 0.69 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 2.07 5.07 -2.39 -0.01 2.06 16 38 H 0.11 4.48 6.91 -2.39 -0.02 4.46 16 39 H 0.11 4.47 6.92 -2.39 -0.02 4.46 16 40 H 0.28 15.69 8.31 -92.71 -0.77 14.91 16 41 H 0.12 3.73 4.21 -2.91 -0.01 3.71 16 42 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.16 1.40 6.24 -2.91 -0.02 1.38 16 Total: -1.00 -72.72 352.99 5.41 -67.31 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.97 Total: 14.36 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.30 Total: -20.13 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.67 Total: -74.45 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -72.72 5.41 -67.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278395131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.242 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds