Wall clock time and date at job start Tue Mar 31 2020 13:33:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47570 * 2 1
4 4 C 1.53001 * 109.47299 * 240.00180 * 2 1 3
5 5 C 1.50702 * 109.46991 * 59.99605 * 4 2 1
6 6 H 1.07997 * 120.00238 * 0.02562 * 5 4 2
7 7 C 1.37876 * 119.99638 * 180.02562 * 5 4 2
8 8 N 1.31513 * 120.00100 * 0.02562 * 7 5 4
9 9 Si 1.86805 * 119.99740 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47301 * 60.00153 * 9 7 5
11 11 H 1.48503 * 109.46937 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47186 * 299.99899 * 9 7 5
13 13 C 1.53002 * 109.47287 * 120.00180 * 2 1 3
14 14 N 1.46905 * 109.46584 * 299.99787 * 13 2 1
15 15 C 1.46902 * 110.99660 * 179.97438 * 14 13 2
16 16 C 1.50698 * 109.47333 * 179.97438 * 15 14 13
17 17 C 1.38458 * 119.99220 * 270.21641 * 16 15 14
18 18 F 1.35096 * 119.98223 * 0.02562 * 17 16 15
19 19 C 1.38403 * 120.03439 * 180.25222 * 17 16 15
20 20 C 1.38432 * 120.02410 * 359.78931 * 19 17 16
21 21 F 1.35100 * 120.01292 * 180.02562 * 20 19 17
22 22 C 1.38576 * 119.98016 * 359.97438 * 20 19 17
23 23 F 1.35105 * 120.01921 * 180.02562 * 22 20 19
24 24 C 1.38396 * 119.98894 * 90.00459 * 16 15 14
25 25 F 1.35104 * 120.00764 * 0.02562 * 24 16 15
26 26 H 1.09003 * 109.46962 * 300.00613 * 1 2 3
27 27 H 1.09000 * 109.46844 * 59.99700 * 1 2 3
28 28 H 1.08993 * 109.47458 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47677 * 180.02562 * 3 2 1
30 30 H 1.08999 * 109.46745 * 300.00575 * 3 2 1
31 31 H 1.08998 * 109.46820 * 59.99948 * 3 2 1
32 32 H 1.08997 * 109.47605 * 180.02562 * 4 2 1
33 33 H 1.09006 * 109.46781 * 300.00054 * 4 2 1
34 34 H 0.97011 * 119.99710 * 179.97438 * 8 7 5
35 35 H 1.08998 * 109.47157 * 180.02562 * 13 2 1
36 36 H 1.09001 * 109.46723 * 59.99571 * 13 2 1
37 37 H 1.00895 * 111.00025 * 303.95104 * 14 13 2
38 38 H 1.09004 * 109.46996 * 60.00282 * 15 14 13
39 39 H 1.08998 * 109.47796 * 300.00424 * 15 14 13
40 40 H 1.08003 * 119.98974 * 179.76909 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5376 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3806
7 6 1.8703 -0.4822 -3.7319
8 7 2.6256 -1.5520 -3.8526
9 14 1.2481 0.3988 -5.2572
10 1 1.7441 1.7985 -5.2573
11 1 1.7421 -0.3020 -6.4697
12 1 -0.2368 0.3999 -5.2571
13 6 2.0400 -0.7213 1.2492
14 7 1.5503 -0.0287 2.4487
15 6 2.0209 -0.6952 3.6703
16 6 1.5004 0.0421 4.8771
17 6 2.2389 1.0753 5.4287
18 9 3.4256 1.4224 4.8843
19 6 1.7641 1.7496 6.5402
20 6 0.5484 1.3945 7.0989
21 9 0.0849 2.0532 8.1835
22 6 -0.1937 0.3638 6.5446
23 9 -1.3806 0.0168 7.0888
24 6 0.2823 -0.3108 5.4312
25 9 -0.4399 -1.3165 4.8905
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 3.1301 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8899
31 1 1.6768 1.9563 0.8900
32 1 3.1300 -0.7216 -1.2491
33 1 1.6767 -1.7489 -1.2492
34 1 2.8594 -1.8838 -4.7337
35 1 3.1300 -0.7209 1.2494
36 1 1.6766 -1.7489 1.2492
37 1 1.8198 0.9436 2.4401
38 1 3.1108 -0.6954 3.6873
39 1 1.6572 -1.7225 3.6870
40 1 2.3425 2.5530 6.9721
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281819511.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:33:01
Heat of formation + Delta-G solvation = -166.079846 kcal
Electronic energy + Delta-G solvation = -26736.422537 eV
Core-core repulsion = 22243.839436 eV
Total energy + Delta-G solvation = -4492.583101 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-50.16409 -49.60323 -49.58370 -48.83073 -39.30385 -37.66391 -34.79220 -32.41726
-31.09464 -30.60274 -27.17448 -26.40999 -26.30676 -24.56356 -23.82774 -22.60881
-21.95013 -19.14640 -18.99458 -18.20651 -17.69522 -17.32007 -16.67827 -16.39542
-16.25425 -16.06729 -15.89066 -15.69798 -15.25067 -15.06979 -14.84033 -14.71585
-14.69966 -14.18640 -13.66295 -13.27545 -13.08593 -12.74165 -12.66725 -12.31500
-12.03600 -11.90766 -11.88562 -11.65892 -10.99012 -10.89603 -10.79965 -10.50853
-10.30572 -10.16423 -9.71588 -9.49638 -9.24544 -9.02731 -8.86536 -8.32183
-8.27971 -5.96902 -3.97154 0.04790 0.11716 2.39591 2.74409 3.32165
3.34522 3.39241 3.41441 3.58585 3.76834 3.79804 3.96557 4.44126
4.53458 4.70341 4.84855 5.01885 5.09217 5.23979 5.38875 5.41064
5.47188 5.65320 5.72379 5.93972 6.03759 6.18105 6.27443 6.46198
6.63057 6.74105 6.81013 7.06768 7.18129 7.23141 7.30010 7.49070
7.68598 7.83321 8.03022 8.47108 9.07877 9.65728 11.14712
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.024659 B = 0.002676 C = 0.002592
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.222169 B =10459.057455 C =10799.794253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.059 4.059
3 C -0.129 4.129
4 C 0.035 3.965
5 C -0.508 4.508
6 H 0.059 0.941
7 C 0.055 3.945
8 N -0.898 5.898
9 Si 0.888 3.112
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.277 1.277
13 C 0.070 3.930
14 N -0.679 5.679
15 C 0.095 3.905
16 C -0.131 4.131
17 C 0.159 3.841
18 F -0.113 7.113
19 C -0.174 4.174
20 C 0.127 3.873
21 F -0.112 7.112
22 C 0.021 3.979
23 F -0.113 7.113
24 C 0.153 3.847
25 F -0.100 7.100
26 H 0.041 0.959
27 H 0.055 0.945
28 H 0.040 0.960
29 H 0.041 0.959
30 H 0.065 0.935
31 H 0.032 0.968
32 H 0.013 0.987
33 H 0.015 0.985
34 H 0.259 0.741
35 H 0.028 0.972
36 H 0.070 0.930
37 H 0.341 0.659
38 H 0.053 0.947
39 H 0.094 0.906
40 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.118 4.994 23.902 24.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.059 4.059
3 C -0.187 4.187
4 C -0.003 4.003
5 C -0.546 4.546
6 H 0.077 0.923
7 C -0.145 4.145
8 N -0.538 5.538
9 Si 0.716 3.284
10 H -0.204 1.204
11 H -0.214 1.214
12 H -0.203 1.203
13 C -0.058 4.058
14 N -0.312 5.312
15 C -0.034 4.034
16 C -0.134 4.134
17 C 0.138 3.862
18 F -0.091 7.091
19 C -0.194 4.194
20 C 0.106 3.894
21 F -0.090 7.090
22 C 0.000 4.000
23 F -0.091 7.091
24 C 0.131 3.869
25 F -0.077 7.077
26 H 0.060 0.940
27 H 0.074 0.926
28 H 0.059 0.941
29 H 0.060 0.940
30 H 0.084 0.916
31 H 0.051 0.949
32 H 0.031 0.969
33 H 0.034 0.966
34 H 0.069 0.931
35 H 0.046 0.954
36 H 0.089 0.911
37 H 0.160 0.840
38 H 0.071 0.929
39 H 0.112 0.888
40 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -1.684 4.522 23.770 24.254
hybrid contribution 0.412 0.612 -0.772 1.068
sum -1.272 5.134 22.998 23.598
Atomic orbital electron populations
1.21603 0.94890 1.00687 1.00191 1.20647 0.95954 0.95038 0.94253
1.21776 0.99767 0.96690 1.00437 1.19115 0.95897 0.95209 0.90056
1.21192 1.30883 1.11965 0.90604 0.92334 1.25009 0.95376 0.95107
0.99046 1.69956 1.37246 1.23127 1.23422 0.86724 0.79222 0.79768
0.82678 1.20351 1.21441 1.20298 1.22171 0.96634 0.98277 0.88725
1.60677 1.63496 1.06560 1.00426 1.20783 0.98003 0.98281 0.86343
1.19908 0.94105 0.98861 1.00496 1.16718 0.82719 0.94184 0.92580
1.91602 1.42289 1.90677 1.84507 1.20950 0.96392 1.04246 0.97803
1.16804 0.93220 0.92531 0.86840 1.91599 1.88180 1.78718 1.50501
1.17504 0.85794 0.99766 0.96943 1.91587 1.41924 1.91138 1.84465
1.16684 0.90154 0.88343 0.91685 1.91633 1.75880 1.55946 1.84284
0.93965 0.92623 0.94068 0.93992 0.91609 0.94916 0.96877 0.96627
0.93091 0.95364 0.91140 0.83978 0.92869 0.88804 0.81582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16
2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.23 16
3 C -0.13 -2.33 7.89 37.16 0.29 -2.04 16
4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16
5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16
6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16
7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16
9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16
10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
13 C 0.07 1.14 4.65 -3.82 -0.02 1.13 16
14 N -0.68 -9.24 5.70 -115.05 -0.66 -9.90 16
15 C 0.09 1.06 5.45 -4.98 -0.03 1.03 16
16 C -0.13 -1.29 5.40 -104.48 -0.56 -1.86 16
17 C 0.16 1.36 7.24 -39.44 -0.29 1.07 16
18 F -0.11 -1.05 16.47 2.25 0.04 -1.01 16
19 C -0.17 -1.23 10.00 -39.45 -0.39 -1.62 16
20 C 0.13 1.07 7.30 -39.39 -0.29 0.78 16
21 F -0.11 -0.99 17.18 2.25 0.04 -0.95 16
22 C 0.02 0.21 7.31 -39.32 -0.29 -0.08 16
23 F -0.11 -1.25 17.09 2.25 0.04 -1.21 16
24 C 0.15 1.59 7.24 -39.39 -0.29 1.31 16
25 F -0.10 -1.20 16.39 2.25 0.04 -1.17 16
26 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16
27 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16
28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16
29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16
31 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16
32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
37 H 0.34 4.49 6.76 -39.29 -0.27 4.22 16
38 H 0.05 0.56 7.64 -51.93 -0.40 0.16 16
39 H 0.09 1.05 7.64 -51.93 -0.40 0.65 16
40 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16
LS Contribution 345.64 15.07 5.21 5.21
Total: -1.00 -28.85 345.64 -6.58 -35.43
By element:
Atomic # 1 Polarization: 3.16 SS G_CDS: -4.87 Total: -1.71 kcal
Atomic # 6 Polarization: -13.11 SS G_CDS: -2.12 Total: -15.23 kcal
Atomic # 7 Polarization: -35.90 SS G_CDS: 0.08 Total: -35.82 kcal
Atomic # 9 Polarization: -4.48 SS G_CDS: 0.15 Total: -4.33 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -28.85 -6.58 -35.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281819511.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -130.647 kcal
(2) G-P(sol) polarization free energy of solvation -28.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds