Wall clock time and date at job start Tue Mar 31 2020 13:33:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47570 * 2 1
4 4 C 1.53001 * 109.47299 * 240.00180 * 2 1 3
5 5 C 1.50702 * 109.46991 * 59.99605 * 4 2 1
6 6 H 1.07997 * 120.00238 * 0.02562 * 5 4 2
7 7 C 1.37876 * 119.99638 * 180.02562 * 5 4 2
8 8 N 1.31513 * 120.00100 * 0.02562 * 7 5 4
9 9 Si 1.86805 * 119.99740 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47301 * 60.00153 * 9 7 5
11 11 H 1.48503 * 109.46937 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47186 * 299.99899 * 9 7 5
13 13 C 1.53002 * 109.47287 * 120.00180 * 2 1 3
14 14 N 1.46905 * 109.46584 * 299.99787 * 13 2 1
15 15 C 1.46902 * 110.99660 * 179.97438 * 14 13 2
16 16 C 1.50698 * 109.47333 * 179.97438 * 15 14 13
17 17 C 1.38458 * 119.99220 * 270.21641 * 16 15 14
18 18 F 1.35096 * 119.98223 * 0.02562 * 17 16 15
19 19 C 1.38403 * 120.03439 * 180.25222 * 17 16 15
20 20 C 1.38432 * 120.02410 * 359.78931 * 19 17 16
21 21 F 1.35100 * 120.01292 * 180.02562 * 20 19 17
22 22 C 1.38576 * 119.98016 * 359.97438 * 20 19 17
23 23 F 1.35105 * 120.01921 * 180.02562 * 22 20 19
24 24 C 1.38396 * 119.98894 * 90.00459 * 16 15 14
25 25 F 1.35104 * 120.00764 * 0.02562 * 24 16 15
26 26 H 1.09003 * 109.46962 * 300.00613 * 1 2 3
27 27 H 1.09000 * 109.46844 * 59.99700 * 1 2 3
28 28 H 1.08993 * 109.47458 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47677 * 180.02562 * 3 2 1
30 30 H 1.08999 * 109.46745 * 300.00575 * 3 2 1
31 31 H 1.08998 * 109.46820 * 59.99948 * 3 2 1
32 32 H 1.08997 * 109.47605 * 180.02562 * 4 2 1
33 33 H 1.09006 * 109.46781 * 300.00054 * 4 2 1
34 34 H 0.97011 * 119.99710 * 179.97438 * 8 7 5
35 35 H 1.08998 * 109.47157 * 180.02562 * 13 2 1
36 36 H 1.09001 * 109.46723 * 59.99571 * 13 2 1
37 37 H 1.00895 * 111.00025 * 303.95104 * 14 13 2
38 38 H 1.09004 * 109.46996 * 60.00282 * 15 14 13
39 39 H 1.08998 * 109.47796 * 300.00424 * 15 14 13
40 40 H 1.08003 * 119.98974 * 179.76909 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5376 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3806
7 6 1.8703 -0.4822 -3.7319
8 7 2.6256 -1.5520 -3.8526
9 14 1.2481 0.3988 -5.2572
10 1 1.7441 1.7985 -5.2573
11 1 1.7421 -0.3020 -6.4697
12 1 -0.2368 0.3999 -5.2571
13 6 2.0400 -0.7213 1.2492
14 7 1.5503 -0.0287 2.4487
15 6 2.0209 -0.6952 3.6703
16 6 1.5004 0.0421 4.8771
17 6 2.2389 1.0753 5.4287
18 9 3.4256 1.4224 4.8843
19 6 1.7641 1.7496 6.5402
20 6 0.5484 1.3945 7.0989
21 9 0.0849 2.0532 8.1835
22 6 -0.1937 0.3638 6.5446
23 9 -1.3806 0.0168 7.0888
24 6 0.2823 -0.3108 5.4312
25 9 -0.4399 -1.3165 4.8905
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 3.1301 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8899
31 1 1.6768 1.9563 0.8900
32 1 3.1300 -0.7216 -1.2491
33 1 1.6767 -1.7489 -1.2492
34 1 2.8594 -1.8838 -4.7337
35 1 3.1300 -0.7209 1.2494
36 1 1.6766 -1.7489 1.2492
37 1 1.8198 0.9436 2.4401
38 1 3.1108 -0.6954 3.6873
39 1 1.6572 -1.7225 3.6870
40 1 2.3425 2.5530 6.9721
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281819511.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:33:00
Heat of formation + Delta-G solvation = -181.223244 kcal
Electronic energy + Delta-G solvation = -26737.079204 eV
Core-core repulsion = 22243.839436 eV
Total energy + Delta-G solvation = -4493.239768 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-50.93358 -50.36900 -50.28260 -49.62310 -40.09180 -39.06581 -36.08061 -34.33189
-32.07783 -31.36995 -29.02693 -27.88934 -27.54354 -25.96946 -24.54409 -24.12169
-22.99194 -19.89351 -19.76236 -19.58346 -18.63461 -18.31598 -18.07719 -17.47033
-17.12387 -16.85950 -16.74133 -16.64354 -16.54761 -16.04698 -15.83363 -15.70572
-15.68195 -15.51681 -14.94443 -14.71357 -14.25102 -13.93967 -13.91369 -13.77446
-13.37958 -13.15155 -12.77092 -12.76172 -12.65047 -12.59611 -12.41524 -12.22856
-12.13832 -11.91775 -11.37721 -10.86910 -10.78043 -10.48641 -10.18560 -9.95779
-9.39899 -8.12915 -6.19641 -0.67124 -0.57475 1.41859 1.43815 1.51018
1.69276 2.02963 2.44692 2.61316 2.87433 2.98452 3.06384 3.21196
3.22855 3.49172 3.90927 4.14280 4.18996 4.21609 4.30312 4.37992
4.42135 4.51964 4.62159 4.70564 4.77320 4.82142 4.95793 5.08533
5.21288 5.22599 5.33087 5.53153 5.55453 5.59648 5.64127 5.87454
5.91670 5.95404 6.37170 6.39759 6.95410 7.47634 8.99162
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.024659 B = 0.002676 C = 0.002592
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.222169 B =10459.057455 C =10799.794253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.056 4.056
3 C -0.122 4.122
4 C 0.041 3.959
5 C -0.515 4.515
6 H 0.065 0.935
7 C -0.003 4.003
8 N -0.938 5.938
9 Si 0.954 3.046
10 H -0.267 1.267
11 H -0.288 1.288
12 H -0.270 1.270
13 C 0.083 3.917
14 N -0.679 5.679
15 C 0.096 3.904
16 C -0.133 4.133
17 C 0.163 3.837
18 F -0.114 7.114
19 C -0.150 4.150
20 C 0.133 3.867
21 F -0.112 7.112
22 C 0.013 3.987
23 F -0.123 7.123
24 C 0.142 3.858
25 F -0.114 7.114
26 H 0.065 0.935
27 H 0.038 0.962
28 H 0.029 0.971
29 H 0.039 0.961
30 H 0.046 0.954
31 H 0.066 0.934
32 H -0.013 1.013
33 H -0.016 1.016
34 H 0.259 0.741
35 H 0.027 0.973
36 H 0.061 0.939
37 H 0.346 0.654
38 H 0.063 0.937
39 H 0.091 0.909
40 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.154 7.061 25.314 26.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.056 4.056
3 C -0.180 4.180
4 C 0.003 3.997
5 C -0.553 4.553
6 H 0.084 0.916
7 C -0.200 4.200
8 N -0.579 5.579
9 Si 0.780 3.220
10 H -0.192 1.192
11 H -0.214 1.214
12 H -0.195 1.195
13 C -0.046 4.046
14 N -0.312 5.312
15 C -0.033 4.033
16 C -0.136 4.136
17 C 0.143 3.857
18 F -0.092 7.092
19 C -0.169 4.169
20 C 0.112 3.888
21 F -0.090 7.090
22 C -0.008 4.008
23 F -0.102 7.102
24 C 0.120 3.880
25 F -0.093 7.093
26 H 0.084 0.916
27 H 0.057 0.943
28 H 0.049 0.951
29 H 0.058 0.942
30 H 0.065 0.935
31 H 0.085 0.915
32 H 0.005 0.995
33 H 0.003 0.997
34 H 0.068 0.932
35 H 0.046 0.954
36 H 0.080 0.920
37 H 0.166 0.834
38 H 0.082 0.918
39 H 0.109 0.891
40 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -1.728 6.606 25.202 26.111
hybrid contribution 0.445 -0.030 -1.124 1.209
sum -1.283 6.576 24.078 24.993
Atomic orbital electron populations
1.21504 0.94451 1.00075 1.00415 1.20509 0.96183 0.95735 0.93219
1.21684 0.99635 0.95493 1.01139 1.18992 0.94084 0.94072 0.92515
1.21599 1.30259 1.11966 0.91501 0.91649 1.25896 0.95714 0.95893
1.02505 1.70099 1.38866 1.24860 1.24068 0.85660 0.78885 0.78860
0.78618 1.19217 1.21411 1.19470 1.21847 0.96388 0.97625 0.88737
1.60559 1.63617 1.06747 1.00238 1.20757 0.98628 0.98189 0.85714
1.19735 0.94156 0.99459 1.00206 1.16692 0.82442 0.93786 0.92793
1.91609 1.42355 1.90621 1.84604 1.21162 0.95473 1.03859 0.96396
1.16808 0.93349 0.91949 0.86653 1.91606 1.88266 1.78614 1.50536
1.17639 0.85707 1.00378 0.97080 1.91557 1.42662 1.91358 1.84627
1.16752 0.90451 0.88524 0.92233 1.91593 1.76331 1.56711 1.84623
0.91597 0.94320 0.95132 0.94156 0.93494 0.91531 0.99510 0.99722
0.93178 0.95443 0.92030 0.83384 0.91849 0.89101 0.78448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16
2 C -0.06 -2.16 0.60 -52.18 -0.03 -2.19 16
3 C -0.12 -4.24 7.89 71.98 0.57 -3.67 16
4 C 0.04 2.09 4.04 29.85 0.12 2.21 16
5 C -0.52 -28.25 7.65 25.60 0.20 -28.06 16
6 H 0.07 3.43 5.68 -2.91 -0.02 3.42 16
7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16
8 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16
9 Si 0.95 44.25 29.54 68.60 2.03 46.27 16
10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16
12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
13 C 0.08 2.66 4.65 86.30 0.40 3.07 16
14 N -0.68 -17.29 5.70 -517.91 -2.95 -20.24 16
15 C 0.10 1.99 5.45 85.56 0.47 2.45 16
16 C -0.13 -2.36 5.40 -19.77 -0.11 -2.47 16
17 C 0.16 2.30 7.24 22.36 0.16 2.47 16
18 F -0.11 -1.75 16.47 44.97 0.74 -1.01 16
19 C -0.15 -1.57 10.00 22.36 0.22 -1.34 16
20 C 0.13 1.89 7.30 22.40 0.16 2.06 16
21 F -0.11 -1.69 17.18 44.97 0.77 -0.92 16
22 C 0.01 0.24 7.31 22.44 0.16 0.41 16
23 F -0.12 -2.65 17.09 44.97 0.77 -1.88 16
24 C 0.14 2.79 7.24 22.40 0.16 2.95 16
25 F -0.11 -2.73 16.39 44.97 0.74 -1.99 16
26 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16
27 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16
28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16
31 H 0.07 1.85 6.57 -2.39 -0.02 1.83 16
32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16
33 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16
34 H 0.26 15.01 8.31 -92.70 -0.77 14.23 16
35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
37 H 0.35 8.17 6.76 -89.70 -0.61 7.56 16
38 H 0.06 1.21 7.64 -2.38 -0.02 1.19 16
39 H 0.09 1.95 7.64 -2.39 -0.02 1.94 16
40 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16
Total: -1.00 -63.08 345.64 6.39 -56.69
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: 0.49 Total: 5.17 kcal
Atomic # 6 Polarization: -28.84 SS G_CDS: 3.53 Total: -25.31 kcal
Atomic # 7 Polarization: -74.34 SS G_CDS: -2.67 Total: -77.01 kcal
Atomic # 9 Polarization: -8.82 SS G_CDS: 3.02 Total: -5.80 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal
Total: -63.08 6.39 -56.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281819511.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.538 kcal
(2) G-P(sol) polarization free energy of solvation -63.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds