Wall clock time and date at job start Tue Mar 31 2020 13:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52993 * 109.47092 * 2 1
4 4 C 1.52998 * 109.47306 * 239.99594 * 2 1 3
5 5 H 1.09001 * 109.58386 * 305.27462 * 4 2 1
6 6 C 1.53242 * 109.58443 * 185.00089 * 4 2 1
7 7 N 1.46377 * 109.48859 * 182.55212 * 6 4 2
8 8 C 1.34777 * 119.64735 * 245.11077 * 7 6 4
9 9 O 1.21586 * 119.99847 * 355.18577 * 8 7 6
10 10 C 1.47636 * 119.99991 * 175.18587 * 8 7 6
11 11 C 1.40011 * 119.89465 * 324.68659 * 10 8 7
12 12 C 1.36323 * 120.10315 * 179.71761 * 11 10 8
13 13 C 1.40885 * 119.89268 * 0.53668 * 12 11 10
14 14 C 1.41111 * 120.10295 * 179.75984 * 13 12 11
15 15 H 1.07997 * 120.00033 * 333.45886 * 14 13 12
16 16 C 1.40226 * 119.99956 * 153.45846 * 14 13 12
17 17 N 1.30644 * 120.00019 * 162.03015 * 16 14 13
18 18 Si 1.86800 * 120.00000 * 342.03515 * 16 14 13
19 19 H 1.48502 * 109.47371 * 95.41812 * 18 16 14
20 20 H 1.48497 * 109.47346 * 215.42319 * 18 16 14
21 21 H 1.48501 * 109.47073 * 335.42035 * 18 16 14
22 22 C 1.40885 * 119.79411 * 359.74108 * 13 12 11
23 23 C 1.36316 * 119.88963 * 359.97438 * 22 13 12
24 24 C 1.46380 * 120.70641 * 65.08541 * 7 6 4
25 25 C 1.53242 * 109.48861 * 294.91289 * 24 7 6
26 26 S 1.81739 * 108.79848 * 57.65716 * 25 24 7
27 27 H 1.09006 * 109.47102 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47121 * 300.00345 * 1 2 3
29 29 H 1.08993 * 109.47050 * 60.00489 * 1 2 3
30 30 H 1.09006 * 109.46741 * 119.99607 * 2 1 3
31 31 H 1.09003 * 109.47606 * 179.97438 * 3 2 1
32 32 H 1.09007 * 109.47251 * 299.99933 * 3 2 1
33 33 H 1.08999 * 109.47419 * 59.99838 * 3 2 1
34 34 H 1.09001 * 109.46289 * 302.55769 * 6 4 2
35 35 H 1.08995 * 109.46407 * 62.54714 * 6 4 2
36 36 H 1.08001 * 119.95054 * 0.02562 * 11 10 8
37 37 H 1.08003 * 120.05387 * 180.25322 * 12 11 10
38 38 H 0.96999 * 119.99876 * 179.97438 * 17 16 14
39 39 H 1.08003 * 120.05774 * 180.02562 * 22 13 12
40 40 H 1.08008 * 119.94459 * 180.02562 * 23 22 13
41 41 H 1.09003 * 109.46849 * 54.91739 * 24 7 6
42 42 H 1.08999 * 109.46829 * 174.91107 * 24 7 6
43 43 H 1.09002 * 109.58362 * 177.44901 * 25 24 7
44 44 H 1.08997 * 109.58249 * 297.72288 * 25 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0401 -0.7213 -1.2492
5 1 1.6027 -1.7185 -1.2994
6 6 3.5673 -0.8327 -1.1904
7 7 4.0580 -1.4685 -2.4142
8 6 4.6569 -2.6739 -2.3452
9 8 4.8660 -3.1878 -1.2633
10 6 5.0591 -3.3703 -3.5833
11 6 4.2695 -3.2595 -4.7342
12 6 4.6399 -3.8960 -5.8814
13 6 5.8133 -4.6754 -5.9045
14 6 6.1981 -5.3403 -7.0881
15 1 5.4518 -5.6236 -7.8155
16 6 7.5497 -5.6332 -7.3200
17 7 7.8802 -6.5331 -8.2075
18 14 8.8778 -4.7368 -6.3596
19 1 9.2774 -5.5545 -5.1862
20 1 10.0575 -4.5161 -7.2341
21 1 8.3541 -3.4272 -5.8951
22 6 6.6014 -4.7886 -4.7422
23 6 6.2260 -4.1437 -3.6014
24 6 3.9048 -0.8093 -3.7121
25 6 2.4155 -0.6953 -4.0549
26 16 1.5785 0.2253 -2.7304
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5137 -0.8900
30 1 1.8933 -0.5138 0.8901
31 1 3.1300 1.4425 0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 4.0009 0.1632 -1.0993
35 1 3.8547 -1.4343 -0.3281
36 1 3.3682 -2.6647 -4.7146
37 1 4.0324 -3.8066 -6.7699
38 1 8.8151 -6.7355 -8.3682
39 1 7.5020 -5.3847 -4.7552
40 1 6.8298 -4.2296 -2.7100
41 1 4.3446 0.1870 -3.6678
42 1 4.4102 -1.3958 -4.4793
43 1 2.2977 -0.1645 -4.9996
44 1 1.9828 -1.6921 -4.1396
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000336156670.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:39:41
Heat of formation + Delta-G solvation = -15.066566 kcal
Electronic energy + Delta-G solvation = -24775.527983 eV
Core-core repulsion = 21397.563226 eV
Total energy + Delta-G solvation = -3377.964757 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.00497 -37.75096 -36.89718 -35.68314 -33.94175 -31.46688 -30.63781 -29.94480
-29.20339 -27.38827 -26.02258 -23.75307 -23.27834 -21.93320 -21.02701 -20.50804
-19.13847 -17.94778 -17.06130 -16.39971 -16.02924 -15.65777 -15.46211 -14.94524
-14.65000 -14.47040 -13.92068 -13.75966 -13.58694 -13.31946 -13.01940 -12.82649
-12.72459 -12.54440 -12.43108 -12.36426 -12.14053 -11.90711 -11.86095 -11.46208
-11.25585 -11.02667 -10.94111 -10.92984 -10.68393 -10.49540 -10.29181 -9.78801
-9.72022 -9.41679 -9.12198 -8.65935 -7.99249 -7.80603 -7.63800 -7.28244
-4.79122 1.64173 1.98920 2.42180 2.57883 2.93356 3.05614 3.13679
3.23426 3.44504 3.76641 4.29716 4.48438 4.55536 4.77929 4.86779
4.88836 5.05104 5.19179 5.23219 5.28578 5.39207 5.40372 5.49476
5.57012 5.65364 5.72645 5.76759 5.82896 5.87110 5.87674 5.93914
5.96671 6.10627 6.17373 6.32481 6.56543 6.60055 6.73299 6.87535
7.19557 7.27557 7.41564 7.61545 7.77578 7.82867 8.04103 8.37677
8.48573 8.70973 9.71071
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.028590 B = 0.003237 C = 0.003089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.119345 B = 8648.469666 C = 9061.825992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.075 4.075
3 C -0.151 4.151
4 C -0.061 4.061
5 H 0.089 0.911
6 C 0.114 3.886
7 N -0.622 5.622
8 C 0.576 3.424
9 O -0.561 6.561
10 C -0.288 4.288
11 C -0.057 4.057
12 C -0.218 4.218
13 C 0.105 3.895
14 C -0.419 4.419
15 H 0.096 0.904
16 C 0.081 3.919
17 N -0.783 5.783
18 Si 0.920 3.080
19 H -0.267 1.267
20 H -0.289 1.289
21 H -0.240 1.240
22 C -0.253 4.253
23 C -0.010 4.010
24 C 0.091 3.909
25 C -0.109 4.109
26 S -0.250 6.250
27 H 0.055 0.945
28 H 0.056 0.944
29 H 0.065 0.935
30 H 0.082 0.918
31 H 0.059 0.941
32 H 0.069 0.931
33 H 0.054 0.946
34 H 0.078 0.922
35 H 0.100 0.900
36 H 0.107 0.893
37 H 0.105 0.895
38 H 0.292 0.708
39 H 0.103 0.897
40 H 0.101 0.899
41 H 0.075 0.925
42 H 0.127 0.873
43 H 0.115 0.885
44 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.367 13.144 8.765 17.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.095 4.095
3 C -0.209 4.209
4 C -0.191 4.191
5 H 0.107 0.893
6 C -0.010 4.010
7 N -0.355 5.355
8 C 0.371 3.629
9 O -0.441 6.441
10 C -0.293 4.293
11 C -0.076 4.076
12 C -0.237 4.237
13 C 0.101 3.899
14 C -0.446 4.446
15 H 0.114 0.886
16 C -0.142 4.142
17 N -0.404 5.404
18 Si 0.746 3.254
19 H -0.193 1.193
20 H -0.217 1.217
21 H -0.163 1.163
22 C -0.272 4.272
23 C -0.029 4.029
24 C -0.034 4.034
25 C -0.258 4.258
26 S -0.023 6.023
27 H 0.074 0.926
28 H 0.075 0.925
29 H 0.084 0.916
30 H 0.100 0.900
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.073 0.927
34 H 0.096 0.904
35 H 0.118 0.882
36 H 0.125 0.875
37 H 0.123 0.877
38 H 0.103 0.897
39 H 0.121 0.879
40 H 0.119 0.881
41 H 0.093 0.907
42 H 0.145 0.855
43 H 0.133 0.867
44 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -8.747 13.608 9.032 18.528
hybrid contribution 1.257 -0.966 0.202 1.598
sum -7.491 12.642 9.234 17.355
Atomic orbital electron populations
1.21878 0.94379 1.02096 1.02210 1.20925 0.96454 0.96627 0.95444
1.21956 1.01374 0.95308 1.02240 1.23755 0.99119 1.01199 0.95011
0.89267 1.21652 0.91024 0.99112 0.89253 1.47801 1.60737 1.20042
1.06950 1.18751 0.75155 0.79266 0.89690 1.90654 1.56279 1.66395
1.30774 1.18772 1.03345 1.13388 0.93746 1.20752 0.97259 0.97231
0.92320 1.20678 1.01320 1.04328 0.97418 1.17829 0.91357 0.88405
0.92299 1.19791 0.93831 1.27606 1.03351 0.88581 1.26412 1.00869
0.92754 0.94200 1.69597 1.21480 1.22272 1.27088 0.86186 0.78080
0.82621 0.78545 1.19302 1.21661 1.16294 1.20667 1.03810 1.08785
0.93956 1.20302 0.93857 0.92202 0.96544 1.22251 0.94438 0.99627
0.87045 1.24017 0.98576 1.03506 0.99710 1.86576 1.69740 1.43147
1.02881 0.92604 0.92499 0.91646 0.89955 0.92250 0.91241 0.92659
0.90420 0.88168 0.87539 0.87679 0.89699 0.87912 0.88129 0.90695
0.85549 0.86716 0.89266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 9.03 37.16 0.34 -0.97 16
2 C -0.07 -0.71 2.70 -90.62 -0.24 -0.95 16
3 C -0.15 -1.32 8.62 37.15 0.32 -1.00 16
4 C -0.06 -0.71 2.51 -26.61 -0.07 -0.78 16
5 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16
6 C 0.11 1.52 5.33 -3.98 -0.02 1.50 16
7 N -0.62 -9.71 2.79 -174.77 -0.49 -10.20 16
8 C 0.58 11.36 7.35 -12.42 -0.09 11.26 16
9 O -0.56 -12.56 16.11 5.29 0.09 -12.47 16
10 C -0.29 -5.99 5.32 -104.73 -0.56 -6.55 16
11 C -0.06 -1.09 7.23 -39.61 -0.29 -1.38 16
12 C -0.22 -4.59 9.73 -39.27 -0.38 -4.97 16
13 C 0.10 2.47 5.20 -106.80 -0.56 1.92 16
14 C -0.42 -10.42 9.58 -37.75 -0.36 -10.78 16
15 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16
16 C 0.08 1.95 5.43 -17.31 -0.09 1.86 16
17 N -0.78 -19.21 13.92 55.56 0.77 -18.44 16
18 Si 0.92 19.48 24.41 -169.99 -4.15 15.33 16
19 H -0.27 -5.58 6.68 56.52 0.38 -5.20 16
20 H -0.29 -5.88 7.11 56.52 0.40 -5.47 16
21 H -0.24 -5.19 6.73 56.52 0.38 -4.81 16
22 C -0.25 -5.88 7.05 -39.27 -0.28 -6.16 16
23 C -0.01 -0.22 9.54 -39.61 -0.38 -0.60 16
24 C 0.09 1.21 5.35 -3.98 -0.02 1.19 16
25 C -0.11 -1.27 6.04 37.28 0.23 -1.05 16
26 S -0.25 -2.89 18.76 -107.50 -2.02 -4.90 16
27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.62 7.18 -51.93 -0.37 0.25 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16
32 H 0.07 0.66 6.71 -51.92 -0.35 0.31 16
33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
34 H 0.08 0.93 6.46 -51.93 -0.34 0.60 16
35 H 0.10 1.47 6.87 -51.93 -0.36 1.12 16
36 H 0.11 1.71 4.03 -52.49 -0.21 1.50 16
37 H 0.11 2.04 8.06 -52.48 -0.42 1.61 16
38 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16
39 H 0.10 2.37 4.25 -52.48 -0.22 2.15 16
40 H 0.10 2.15 7.99 -52.48 -0.42 1.73 16
41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
42 H 0.13 1.88 4.10 -51.93 -0.21 1.66 16
43 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16
44 H 0.09 1.12 6.78 -51.93 -0.35 0.76 16
LS Contribution 344.80 15.07 5.20 5.20
Total: -1.00 -26.85 344.80 -9.21 -36.06
By element:
Atomic # 1 Polarization: 13.04 SS G_CDS: -6.16 Total: 6.88 kcal
Atomic # 6 Polarization: -15.00 SS G_CDS: -2.45 Total: -17.46 kcal
Atomic # 7 Polarization: -28.93 SS G_CDS: 0.29 Total: -28.64 kcal
Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal
Atomic # 14 Polarization: 19.48 SS G_CDS: -4.15 Total: 15.33 kcal
Atomic # 16 Polarization: -2.89 SS G_CDS: -2.02 Total: -4.90 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -26.85 -9.21 -36.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336156670.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.995 kcal
(2) G-P(sol) polarization free energy of solvation -26.852 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds