Wall clock time and date at job start Tue Mar 31 2020 13:39:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52993 * 109.47092 * 2 1
4 4 C 1.52998 * 109.47306 * 239.99594 * 2 1 3
5 5 H 1.09001 * 109.58386 * 305.27462 * 4 2 1
6 6 C 1.53242 * 109.58443 * 185.00089 * 4 2 1
7 7 N 1.46377 * 109.48859 * 182.55212 * 6 4 2
8 8 C 1.34777 * 119.64735 * 245.11077 * 7 6 4
9 9 O 1.21586 * 119.99847 * 355.18577 * 8 7 6
10 10 C 1.47636 * 119.99991 * 175.18587 * 8 7 6
11 11 C 1.40011 * 119.89465 * 324.68659 * 10 8 7
12 12 C 1.36323 * 120.10315 * 179.71761 * 11 10 8
13 13 C 1.40885 * 119.89268 * 0.53668 * 12 11 10
14 14 C 1.41111 * 120.10295 * 179.75984 * 13 12 11
15 15 H 1.07997 * 120.00033 * 333.45886 * 14 13 12
16 16 C 1.40226 * 119.99956 * 153.45846 * 14 13 12
17 17 N 1.30644 * 120.00019 * 162.03015 * 16 14 13
18 18 Si 1.86800 * 120.00000 * 342.03515 * 16 14 13
19 19 H 1.48502 * 109.47371 * 95.41812 * 18 16 14
20 20 H 1.48497 * 109.47346 * 215.42319 * 18 16 14
21 21 H 1.48501 * 109.47073 * 335.42035 * 18 16 14
22 22 C 1.40885 * 119.79411 * 359.74108 * 13 12 11
23 23 C 1.36316 * 119.88963 * 359.97438 * 22 13 12
24 24 C 1.46380 * 120.70641 * 65.08541 * 7 6 4
25 25 C 1.53242 * 109.48861 * 294.91289 * 24 7 6
26 26 S 1.81739 * 108.79848 * 57.65716 * 25 24 7
27 27 H 1.09006 * 109.47102 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47121 * 300.00345 * 1 2 3
29 29 H 1.08993 * 109.47050 * 60.00489 * 1 2 3
30 30 H 1.09006 * 109.46741 * 119.99607 * 2 1 3
31 31 H 1.09003 * 109.47606 * 179.97438 * 3 2 1
32 32 H 1.09007 * 109.47251 * 299.99933 * 3 2 1
33 33 H 1.08999 * 109.47419 * 59.99838 * 3 2 1
34 34 H 1.09001 * 109.46289 * 302.55769 * 6 4 2
35 35 H 1.08995 * 109.46407 * 62.54714 * 6 4 2
36 36 H 1.08001 * 119.95054 * 0.02562 * 11 10 8
37 37 H 1.08003 * 120.05387 * 180.25322 * 12 11 10
38 38 H 0.96999 * 119.99876 * 179.97438 * 17 16 14
39 39 H 1.08003 * 120.05774 * 180.02562 * 22 13 12
40 40 H 1.08008 * 119.94459 * 180.02562 * 23 22 13
41 41 H 1.09003 * 109.46849 * 54.91739 * 24 7 6
42 42 H 1.08999 * 109.46829 * 174.91107 * 24 7 6
43 43 H 1.09002 * 109.58362 * 177.44901 * 25 24 7
44 44 H 1.08997 * 109.58249 * 297.72288 * 25 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0401 -0.7213 -1.2492
5 1 1.6027 -1.7185 -1.2994
6 6 3.5673 -0.8327 -1.1904
7 7 4.0580 -1.4685 -2.4142
8 6 4.6569 -2.6739 -2.3452
9 8 4.8660 -3.1878 -1.2633
10 6 5.0591 -3.3703 -3.5833
11 6 4.2695 -3.2595 -4.7342
12 6 4.6399 -3.8960 -5.8814
13 6 5.8133 -4.6754 -5.9045
14 6 6.1981 -5.3403 -7.0881
15 1 5.4518 -5.6236 -7.8155
16 6 7.5497 -5.6332 -7.3200
17 7 7.8802 -6.5331 -8.2075
18 14 8.8778 -4.7368 -6.3596
19 1 9.2774 -5.5545 -5.1862
20 1 10.0575 -4.5161 -7.2341
21 1 8.3541 -3.4272 -5.8951
22 6 6.6014 -4.7886 -4.7422
23 6 6.2260 -4.1437 -3.6014
24 6 3.9048 -0.8093 -3.7121
25 6 2.4155 -0.6953 -4.0549
26 16 1.5785 0.2253 -2.7304
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5137 -0.8900
30 1 1.8933 -0.5138 0.8901
31 1 3.1300 1.4425 0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 4.0009 0.1632 -1.0993
35 1 3.8547 -1.4343 -0.3281
36 1 3.3682 -2.6647 -4.7146
37 1 4.0324 -3.8066 -6.7699
38 1 8.8151 -6.7355 -8.3682
39 1 7.5020 -5.3847 -4.7552
40 1 6.8298 -4.2296 -2.7100
41 1 4.3446 0.1870 -3.6678
42 1 4.4102 -1.3958 -4.4793
43 1 2.2977 -0.1645 -4.9996
44 1 1.9828 -1.6921 -4.1396
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336156670.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:39:40
Heat of formation + Delta-G solvation = -27.997330 kcal
Electronic energy + Delta-G solvation = -24776.088703 eV
Core-core repulsion = 21397.563226 eV
Total energy + Delta-G solvation = -3378.525477 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.47486 -39.32612 -38.07907 -36.87689 -35.69200 -32.92165 -32.11114 -31.48615
-30.38586 -28.07743 -27.65748 -24.83062 -24.58371 -23.60095 -22.62683 -21.34426
-20.54792 -19.68111 -18.52840 -17.64743 -17.24342 -17.19480 -16.56877 -16.19422
-16.03003 -15.76329 -15.36943 -15.08792 -14.75973 -14.62080 -14.43709 -14.28468
-14.07779 -13.91454 -13.79535 -13.43784 -13.38562 -12.95842 -12.80502 -12.77529
-12.62366 -12.25735 -12.20696 -12.04191 -11.98340 -11.72253 -11.69748 -11.56419
-11.12113 -10.76733 -10.66395 -9.94483 -9.69999 -9.52583 -9.07974 -8.58142
-6.64728 0.28088 0.70485 0.84150 1.22842 1.34093 1.44678 1.49592
1.81068 1.96272 2.04991 2.54976 3.40973 3.52710 3.64784 3.75589
3.86323 3.98360 4.05946 4.12292 4.18205 4.23036 4.35453 4.41355
4.55859 4.61311 4.64866 4.70700 4.73249 4.85363 4.86805 4.87562
4.92249 5.02170 5.04392 5.12391 5.19032 5.40188 5.44607 5.45957
5.48265 5.59095 5.71530 5.81416 6.06130 6.22573 6.30179 6.57112
6.67864 7.17827 7.97270
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.028590 B = 0.003237 C = 0.003089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.119345 B = 8648.469666 C = 9061.825992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.073 4.073
3 C -0.147 4.147
4 C -0.058 4.058
5 H 0.072 0.928
6 C 0.114 3.886
7 N -0.613 5.613
8 C 0.574 3.426
9 O -0.593 6.593
10 C -0.283 4.283
11 C -0.041 4.041
12 C -0.223 4.223
13 C 0.094 3.906
14 C -0.454 4.454
15 H 0.073 0.927
16 C 0.053 3.947
17 N -0.819 5.819
18 Si 0.964 3.036
19 H -0.265 1.265
20 H -0.273 1.273
21 H -0.248 1.248
22 C -0.265 4.265
23 C -0.023 4.023
24 C 0.087 3.913
25 C -0.110 4.110
26 S -0.235 6.235
27 H 0.050 0.950
28 H 0.071 0.929
29 H 0.059 0.941
30 H 0.087 0.913
31 H 0.058 0.942
32 H 0.063 0.937
33 H 0.069 0.931
34 H 0.097 0.903
35 H 0.085 0.915
36 H 0.143 0.857
37 H 0.121 0.879
38 H 0.301 0.699
39 H 0.100 0.900
40 H 0.104 0.896
41 H 0.096 0.904
42 H 0.113 0.887
43 H 0.140 0.860
44 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.542 15.835 10.020 21.029
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.093 4.093
3 C -0.205 4.205
4 C -0.188 4.188
5 H 0.090 0.910
6 C -0.010 4.010
7 N -0.345 5.345
8 C 0.368 3.632
9 O -0.475 6.475
10 C -0.288 4.288
11 C -0.059 4.059
12 C -0.242 4.242
13 C 0.090 3.910
14 C -0.482 4.482
15 H 0.091 0.909
16 C -0.167 4.167
17 N -0.442 5.442
18 Si 0.788 3.212
19 H -0.191 1.191
20 H -0.200 1.200
21 H -0.172 1.172
22 C -0.284 4.284
23 C -0.042 4.042
24 C -0.036 4.036
25 C -0.259 4.259
26 S -0.008 6.008
27 H 0.070 0.930
28 H 0.090 0.910
29 H 0.078 0.922
30 H 0.105 0.895
31 H 0.077 0.923
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.115 0.885
35 H 0.103 0.897
36 H 0.160 0.840
37 H 0.139 0.861
38 H 0.112 0.888
39 H 0.117 0.883
40 H 0.123 0.877
41 H 0.114 0.886
42 H 0.131 0.869
43 H 0.158 0.842
44 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -9.946 16.332 10.271 21.706
hybrid contribution 1.446 -1.656 -0.027 2.198
sum -8.500 14.676 10.244 19.814
Atomic orbital electron populations
1.21847 0.93735 1.01978 1.02666 1.20959 0.96933 0.96987 0.94392
1.21925 1.01309 0.94570 1.02685 1.23710 0.97595 1.00911 0.96568
0.90977 1.21816 0.92307 0.99345 0.87553 1.47820 1.59159 1.18688
1.08810 1.18599 0.75609 0.80381 0.88631 1.90644 1.57805 1.67570
1.31507 1.19120 1.02578 1.12234 0.94825 1.21032 0.97821 0.96210
0.90885 1.20922 1.00720 1.03798 0.98798 1.18006 0.92416 0.88680
0.91872 1.19757 0.94089 1.30346 1.03972 0.90899 1.26946 1.01977
0.93006 0.94773 1.69605 1.22448 1.23535 1.28643 0.85502 0.76674
0.81172 0.77826 1.19058 1.19987 1.17152 1.20723 1.04067 1.09325
0.94281 1.20465 0.94750 0.92651 0.96379 1.22393 0.95831 1.00061
0.85322 1.24025 0.96968 1.03745 1.01151 1.86616 1.69548 1.42415
1.02216 0.93037 0.90978 0.92234 0.89516 0.92278 0.91803 0.91213
0.88513 0.89674 0.84016 0.86110 0.88774 0.88252 0.87747 0.88618
0.86899 0.84172 0.89959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.19 9.03 71.98 0.65 -1.54 16
2 C -0.07 -1.19 2.70 -10.80 -0.03 -1.22 16
3 C -0.15 -2.11 8.62 71.98 0.62 -1.49 16
4 C -0.06 -1.22 2.51 30.67 0.08 -1.14 16
5 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
6 C 0.11 2.77 5.33 86.48 0.46 3.23 16
7 N -0.61 -17.74 2.79 -825.13 -2.30 -20.04 16
8 C 0.57 21.79 7.35 86.72 0.64 22.43 16
9 O -0.59 -26.12 16.11 -3.99 -0.06 -26.19 16
10 C -0.28 -11.42 5.32 -19.94 -0.11 -11.53 16
11 C -0.04 -1.50 7.23 22.25 0.16 -1.34 16
12 C -0.22 -9.19 9.73 22.47 0.22 -8.97 16
13 C 0.09 4.45 5.20 -21.28 -0.11 4.34 16
14 C -0.45 -23.35 9.58 23.46 0.22 -23.13 16
15 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16
16 C 0.05 2.60 5.43 85.35 0.46 3.07 16
17 N -0.82 -41.36 13.92 21.87 0.30 -41.05 16
18 Si 0.96 40.37 24.41 68.60 1.67 42.05 16
19 H -0.26 -10.86 6.68 99.48 0.66 -10.19 16
20 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16
21 H -0.25 -10.58 6.73 99.48 0.67 -9.91 16
22 C -0.26 -12.37 7.05 22.47 0.16 -12.21 16
23 C -0.02 -1.03 9.54 22.25 0.21 -0.81 16
24 C 0.09 2.05 5.35 86.48 0.46 2.51 16
25 C -0.11 -2.18 6.04 72.06 0.44 -1.74 16
26 S -0.24 -4.67 18.76 -56.49 -1.06 -5.73 16
27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16
28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.06 0.98 7.18 -2.39 -0.02 0.96 16
30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16
31 H 0.06 0.85 6.52 -2.39 -0.02 0.83 16
32 H 0.06 1.01 6.71 -2.38 -0.02 0.99 16
33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
34 H 0.10 2.03 6.46 -2.39 -0.02 2.01 16
35 H 0.08 2.39 6.87 -2.39 -0.02 2.37 16
36 H 0.14 4.13 4.03 -2.91 -0.01 4.12 16
37 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16
38 H 0.30 13.56 8.29 -92.71 -0.77 12.79 16
39 H 0.10 4.64 4.25 -2.91 -0.01 4.63 16
40 H 0.10 4.46 7.99 -2.91 -0.02 4.44 16
41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
42 H 0.11 3.01 4.10 -2.39 -0.01 3.00 16
43 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16
44 H 0.08 1.78 6.78 -2.39 -0.02 1.76 16
Total: -1.00 -58.60 344.80 4.03 -54.57
By element:
Atomic # 1 Polarization: 24.99 SS G_CDS: 0.94 Total: 25.92 kcal
Atomic # 6 Polarization: -34.08 SS G_CDS: 4.54 Total: -29.55 kcal
Atomic # 7 Polarization: -59.09 SS G_CDS: -2.00 Total: -61.09 kcal
Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.19 kcal
Atomic # 14 Polarization: 40.37 SS G_CDS: 1.67 Total: 42.05 kcal
Atomic # 16 Polarization: -4.67 SS G_CDS: -1.06 Total: -5.73 kcal
Total: -58.60 4.03 -54.57 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336156670.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.577 kcal
(2) G-P(sol) polarization free energy of solvation -58.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.574 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds