Wall clock time and date at job start Tue Mar 31 2020 13:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47249 * 119.99694 * 2 1 3 5 5 H 1.09005 * 110.26579 * 62.62372 * 4 2 1 6 6 C 1.54343 * 110.30463 * 300.55357 * 4 2 1 7 7 C 1.54343 * 102.39281 * 214.63605 * 6 4 2 8 8 H 1.09001 * 110.38963 * 145.30288 * 7 6 4 9 9 N 1.46508 * 110.30039 * 267.41259 * 7 6 4 10 10 C 1.34783 * 119.99782 * 202.20071 * 9 7 6 11 11 O 1.21280 * 119.99878 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99599 * 180.02562 * 10 9 7 13 13 S 1.81005 * 109.46848 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99952 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00224 * 0.02562 * 14 13 12 16 16 C 1.38795 * 120.00002 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00032 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00088 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47257 * 90.00110 * 18 16 14 20 20 H 1.48501 * 109.47221 * 210.00378 * 18 16 14 21 21 H 1.48500 * 109.46794 * 330.00123 * 18 16 14 22 22 C 1.51365 * 105.17525 * 26.33561 * 7 6 4 23 23 C 1.38500 * 130.39833 * 163.09780 * 22 7 6 24 24 C 1.38100 * 120.21896 * 180.08317 * 23 22 7 25 25 C 1.38254 * 119.93532 * 359.61967 * 24 23 22 26 26 C 1.38108 * 119.93455 * 0.20251 * 25 24 23 27 27 C 1.38222 * 109.75754 * 342.82013 * 22 7 6 28 28 H 1.09003 * 109.47403 * 305.50949 * 1 2 3 29 29 H 1.09001 * 109.47050 * 65.51328 * 1 2 3 30 30 H 1.08998 * 109.47190 * 185.51063 * 1 2 3 31 31 H 1.08997 * 109.47426 * 239.99960 * 2 1 3 32 32 H 1.09006 * 109.47058 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47596 * 299.99852 * 3 2 1 34 34 H 1.09002 * 109.47213 * 60.00219 * 3 2 1 35 35 H 1.08998 * 110.82641 * 96.40730 * 6 4 2 36 36 H 1.08998 * 110.81703 * 332.85811 * 6 4 2 37 37 H 0.96992 * 119.99969 * 22.20545 * 9 7 6 38 38 H 1.08990 * 109.47448 * 299.99864 * 12 10 9 39 39 H 1.09004 * 109.47476 * 60.00281 * 12 10 9 40 40 H 0.97006 * 120.00173 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.88611 * 359.97438 * 23 22 7 42 42 H 1.08000 * 120.03215 * 179.79574 * 24 23 22 43 43 H 1.07999 * 120.03586 * 180.22919 * 25 24 23 44 44 H 1.07994 * 119.89384 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7226 -1.7639 1.2393 6 6 1.5248 -0.0167 2.5222 7 6 2.7039 -0.1982 3.5015 8 1 2.7961 0.6728 4.1504 9 7 2.5173 -1.4105 4.3026 10 6 3.1460 -1.5384 5.4880 11 8 3.8666 -0.6500 5.8911 12 6 2.9545 -2.7856 6.3117 13 16 3.9229 -2.6568 7.8355 14 6 3.5239 -4.2017 8.5831 15 1 2.8565 -4.8875 8.0824 16 6 4.0673 -4.5372 9.8154 17 7 3.7696 -5.6915 10.3736 18 14 5.2221 -3.3513 10.6811 19 1 4.4358 -2.4430 11.5539 20 1 6.1897 -4.1170 11.5073 21 1 5.9589 -2.5512 9.6700 22 6 3.9304 -0.3318 2.6245 23 6 5.2741 -0.2059 2.9353 24 6 6.2328 -0.3717 1.9552 25 6 5.8512 -0.6721 0.6607 26 6 4.5119 -0.8017 0.3495 27 6 3.5489 -0.6323 1.3304 28 1 -0.3634 0.5969 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.6279 -0.5072 2.9005 36 1 1.3386 1.0402 2.3316 37 1 1.9414 -2.1211 3.9800 38 1 1.8993 -2.8987 6.5598 39 1 3.2887 -3.6525 5.7416 40 1 4.1497 -5.9262 11.2347 41 1 5.5731 0.0245 3.9472 42 1 7.2796 -0.2695 2.2002 43 1 6.5997 -0.8058 -0.1062 44 1 4.2146 -1.0361 -0.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345042231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:33 Heat of formation + Delta-G solvation = -27.048821 kcal Electronic energy + Delta-G solvation = -24215.636416 eV Core-core repulsion = 20837.152069 eV Total energy + Delta-G solvation = -3378.484347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99140 -38.87383 -37.10966 -35.09166 -32.45006 -32.36963 -31.01552 -29.45659 -28.70862 -27.39140 -26.41826 -25.58971 -22.92944 -22.22224 -21.26186 -20.33651 -19.19896 -17.89885 -16.86330 -16.60189 -15.70059 -15.60865 -15.37639 -15.27773 -14.95236 -14.76373 -14.27082 -13.85401 -13.81919 -13.34912 -13.30788 -13.08328 -12.79725 -12.75262 -12.50972 -12.25737 -12.11555 -11.92375 -11.54794 -11.51250 -11.27228 -11.21387 -11.02480 -11.00614 -10.75331 -10.59238 -10.54287 -9.85935 -9.56770 -9.03441 -8.98183 -8.83881 -8.65525 -8.49534 -6.90999 -6.28637 -4.00119 1.23716 1.34993 2.78776 2.98064 3.31125 3.34395 3.50598 3.61504 3.84114 4.12124 4.25948 4.33400 4.51556 4.64490 4.74168 4.81436 4.89263 5.00012 5.01570 5.06674 5.10493 5.10940 5.27423 5.30061 5.34412 5.47728 5.51621 5.56116 5.64175 5.68872 5.72377 5.76103 5.79189 5.83806 5.94628 5.99885 6.02597 6.08405 6.10602 6.38804 6.49329 6.56187 6.61678 6.94571 7.63044 7.94510 8.42064 8.50808 9.17609 10.80679 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002996 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.961716 B = 9345.100155 C =10067.926309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.046 4.046 5 H 0.086 0.914 6 C -0.124 4.124 7 C 0.185 3.815 8 H 0.095 0.905 9 N -0.725 5.725 10 C 0.533 3.467 11 O -0.517 6.517 12 C -0.124 4.124 13 S -0.141 6.141 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.095 3.905 17 N -0.881 5.881 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C -0.108 4.108 23 C -0.083 4.083 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.079 4.079 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 12.191 -24.374 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.208 4.208 4 C -0.064 4.064 5 H 0.104 0.896 6 C -0.162 4.162 7 C 0.080 3.920 8 H 0.113 0.887 9 N -0.379 5.379 10 C 0.319 3.681 11 O -0.392 6.392 12 C -0.275 4.275 13 S 0.086 5.914 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.518 5.518 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.159 1.159 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.126 13.549 -23.523 27.325 hybrid contribution -0.501 -1.274 -0.064 1.370 sum -3.627 12.276 -23.586 26.836 Atomic orbital electron populations 1.21871 0.94966 1.01910 1.01869 1.21052 0.95628 0.96507 0.97179 1.21938 1.01664 0.95668 1.01535 1.20797 0.90559 0.99984 0.95103 0.89580 1.22753 0.97209 1.02413 0.93818 1.20226 0.91211 0.89198 0.91396 0.88678 1.46028 1.50807 1.20673 1.20360 1.20285 0.78983 0.88321 0.80504 1.90678 1.36660 1.41507 1.70326 1.23281 1.05462 0.97916 1.00814 1.84762 1.61632 1.27904 1.17149 1.22322 1.34559 1.02013 1.07965 0.89421 1.24714 0.95592 0.95026 0.95995 1.69941 1.43320 1.21092 1.17411 0.86733 0.81831 0.81726 0.81550 1.19204 1.19959 1.15917 1.20823 0.94490 1.00813 0.94808 1.20875 0.91677 0.97668 0.99883 1.21088 0.99406 1.00746 0.93123 1.21038 0.95648 1.00069 0.96636 1.20514 0.92254 1.01879 0.98544 1.20450 0.94896 0.98778 0.93807 0.92334 0.92757 0.92600 0.91137 0.92206 0.92957 0.92347 0.89699 0.88995 0.76678 0.88538 0.88566 0.91947 0.85525 0.85981 0.86152 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.85 37.16 0.33 -0.53 16 2 C -0.09 -0.57 2.64 -90.62 -0.24 -0.81 16 3 C -0.15 -1.06 8.66 37.16 0.32 -0.74 16 4 C -0.05 -0.37 2.79 -90.74 -0.25 -0.62 16 5 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 6 C -0.12 -1.01 4.95 -25.32 -0.13 -1.14 16 7 C 0.18 2.16 3.17 -68.05 -0.22 1.95 16 8 H 0.10 1.27 7.64 -51.93 -0.40 0.88 16 9 N -0.73 -9.35 5.11 -53.92 -0.28 -9.62 16 10 C 0.53 9.40 7.83 -10.99 -0.09 9.31 16 11 O -0.52 -10.88 15.36 5.56 0.09 -10.80 16 12 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 13 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 14 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 15 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.72 13.97 55.49 0.78 -25.94 16 18 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 22 C -0.11 -1.34 5.76 -104.20 -0.60 -1.94 16 23 C -0.08 -1.12 10.04 -39.54 -0.40 -1.52 16 24 C -0.13 -1.46 10.05 -39.63 -0.40 -1.86 16 25 C -0.12 -1.17 10.05 -39.62 -0.40 -1.57 16 26 C -0.11 -1.12 9.18 -39.53 -0.36 -1.48 16 27 C -0.08 -0.81 4.42 -104.20 -0.46 -1.27 16 28 H 0.06 0.33 7.35 -51.93 -0.38 -0.05 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.06 0.49 6.65 -51.93 -0.35 0.15 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 6.12 -51.93 -0.32 0.09 16 35 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.09 0.68 5.69 -51.93 -0.30 0.39 16 37 H 0.40 4.07 8.58 -40.82 -0.35 3.72 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.13 1.94 7.86 -52.49 -0.41 1.53 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.91 8.02 -52.49 -0.42 0.49 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -33.42 367.12 -9.76 -43.18 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.72 Total: 2.51 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.45 Total: -16.45 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.50 Total: -35.56 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.42 -9.76 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345042231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.128 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds