Wall clock time and date at job start Tue Mar 31 2020 13:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47249 * 119.99694 * 2 1 3 5 5 H 1.09005 * 110.26579 * 62.62372 * 4 2 1 6 6 C 1.54343 * 110.30463 * 300.55357 * 4 2 1 7 7 C 1.54343 * 102.39281 * 214.63605 * 6 4 2 8 8 H 1.09001 * 110.38963 * 145.30288 * 7 6 4 9 9 N 1.46508 * 110.30039 * 267.41259 * 7 6 4 10 10 C 1.34783 * 119.99782 * 202.20071 * 9 7 6 11 11 O 1.21280 * 119.99878 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99599 * 180.02562 * 10 9 7 13 13 S 1.81005 * 109.46848 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99952 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00224 * 0.02562 * 14 13 12 16 16 C 1.38795 * 120.00002 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00032 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00088 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47257 * 90.00110 * 18 16 14 20 20 H 1.48501 * 109.47221 * 210.00378 * 18 16 14 21 21 H 1.48500 * 109.46794 * 330.00123 * 18 16 14 22 22 C 1.51365 * 105.17525 * 26.33561 * 7 6 4 23 23 C 1.38500 * 130.39833 * 163.09780 * 22 7 6 24 24 C 1.38100 * 120.21896 * 180.08317 * 23 22 7 25 25 C 1.38254 * 119.93532 * 359.61967 * 24 23 22 26 26 C 1.38108 * 119.93455 * 0.20251 * 25 24 23 27 27 C 1.38222 * 109.75754 * 342.82013 * 22 7 6 28 28 H 1.09003 * 109.47403 * 305.50949 * 1 2 3 29 29 H 1.09001 * 109.47050 * 65.51328 * 1 2 3 30 30 H 1.08998 * 109.47190 * 185.51063 * 1 2 3 31 31 H 1.08997 * 109.47426 * 239.99960 * 2 1 3 32 32 H 1.09006 * 109.47058 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47596 * 299.99852 * 3 2 1 34 34 H 1.09002 * 109.47213 * 60.00219 * 3 2 1 35 35 H 1.08998 * 110.82641 * 96.40730 * 6 4 2 36 36 H 1.08998 * 110.81703 * 332.85811 * 6 4 2 37 37 H 0.96992 * 119.99969 * 22.20545 * 9 7 6 38 38 H 1.08990 * 109.47448 * 299.99864 * 12 10 9 39 39 H 1.09004 * 109.47476 * 60.00281 * 12 10 9 40 40 H 0.97006 * 120.00173 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.88611 * 359.97438 * 23 22 7 42 42 H 1.08000 * 120.03215 * 179.79574 * 24 23 22 43 43 H 1.07999 * 120.03586 * 180.22919 * 25 24 23 44 44 H 1.07994 * 119.89384 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7226 -1.7639 1.2393 6 6 1.5248 -0.0167 2.5222 7 6 2.7039 -0.1982 3.5015 8 1 2.7961 0.6728 4.1504 9 7 2.5173 -1.4105 4.3026 10 6 3.1460 -1.5384 5.4880 11 8 3.8666 -0.6500 5.8911 12 6 2.9545 -2.7856 6.3117 13 16 3.9229 -2.6568 7.8355 14 6 3.5239 -4.2017 8.5831 15 1 2.8565 -4.8875 8.0824 16 6 4.0673 -4.5372 9.8154 17 7 3.7696 -5.6915 10.3736 18 14 5.2221 -3.3513 10.6811 19 1 4.4358 -2.4430 11.5539 20 1 6.1897 -4.1170 11.5073 21 1 5.9589 -2.5512 9.6700 22 6 3.9304 -0.3318 2.6245 23 6 5.2741 -0.2059 2.9353 24 6 6.2328 -0.3717 1.9552 25 6 5.8512 -0.6721 0.6607 26 6 4.5119 -0.8017 0.3495 27 6 3.5489 -0.6323 1.3304 28 1 -0.3634 0.5969 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.6279 -0.5072 2.9005 36 1 1.3386 1.0402 2.3316 37 1 1.9414 -2.1211 3.9800 38 1 1.8993 -2.8987 6.5598 39 1 3.2887 -3.6525 5.7416 40 1 4.1497 -5.9262 11.2347 41 1 5.5731 0.0245 3.9472 42 1 7.2796 -0.2695 2.2002 43 1 6.5997 -0.8058 -0.1062 44 1 4.2146 -1.0361 -0.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345042231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:32 Heat of formation + Delta-G solvation = -46.675715 kcal Electronic energy + Delta-G solvation = -24216.487502 eV Core-core repulsion = 20837.152069 eV Total energy + Delta-G solvation = -3379.335433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87563 -40.17883 -37.84415 -36.08686 -34.68766 -33.42607 -31.88147 -30.76390 -29.59649 -27.91489 -27.86081 -27.19894 -23.72980 -22.99068 -22.35408 -21.48124 -19.98320 -19.77151 -18.01175 -17.87755 -17.12710 -16.74691 -16.43126 -16.37492 -16.13424 -15.90219 -15.67110 -15.02717 -14.85985 -14.61778 -14.50019 -14.29258 -13.87638 -13.50760 -13.40833 -13.36025 -13.19000 -13.02959 -12.85718 -12.72921 -12.59078 -12.32723 -12.16082 -11.96302 -11.87190 -11.59295 -11.43289 -11.18589 -11.15950 -11.02984 -10.55248 -10.18931 -9.74480 -9.49934 -9.00898 -8.53085 -6.23695 0.36198 0.47625 0.98445 1.29761 1.45563 1.55118 1.56268 2.21970 2.26473 2.69757 2.85164 2.90928 3.35609 3.53128 3.82767 3.92106 3.97262 4.12945 4.17460 4.21297 4.24768 4.32488 4.39546 4.44103 4.46945 4.63280 4.65823 4.80118 4.87276 4.89472 4.95630 5.03799 5.12450 5.13668 5.21761 5.25622 5.35486 5.43800 5.52058 5.56589 5.60539 5.62962 5.69376 5.73429 6.09913 6.10331 6.46381 6.92172 7.19454 8.59476 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002996 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.961716 B = 9345.100155 C =10067.926309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.042 4.042 5 H 0.098 0.902 6 C -0.113 4.113 7 C 0.181 3.819 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.536 3.464 11 O -0.557 6.557 12 C -0.111 4.111 13 S -0.174 6.174 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.046 3.954 17 N -0.917 5.917 18 Si 0.914 3.086 19 H -0.261 1.261 20 H -0.259 1.259 21 H -0.238 1.238 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.073 4.073 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.416 0.584 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 12.673 -27.032 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.060 4.060 5 H 0.116 0.884 6 C -0.151 4.151 7 C 0.077 3.923 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.322 3.678 11 O -0.435 6.435 12 C -0.262 4.262 13 S 0.053 5.947 14 C -0.676 4.676 15 H 0.080 0.920 16 C -0.160 4.160 17 N -0.555 5.555 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.183 1.183 21 H -0.162 1.162 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.156 4.156 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.074 4.074 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.253 0.747 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.170 14.016 -26.221 30.023 hybrid contribution -0.239 -1.415 0.593 1.553 sum -4.409 12.601 -25.628 28.896 Atomic orbital electron populations 1.21859 0.93981 1.02365 1.02281 1.21012 0.96326 0.95866 0.96512 1.21935 1.00728 0.96235 1.01906 1.20850 0.88766 1.00805 0.95586 0.88416 1.22771 0.96153 1.03442 0.92709 1.20398 0.93047 0.87448 0.91426 0.90969 1.45809 1.49381 1.21584 1.18676 1.19969 0.79098 0.87136 0.81612 1.90675 1.38673 1.42593 1.71561 1.23266 1.05285 0.99571 0.98055 1.84702 1.63544 1.25792 1.20697 1.22462 1.33868 1.03060 1.08236 0.91987 1.25558 0.97080 0.96556 0.96772 1.70016 1.44649 1.22655 1.18207 0.85871 0.80201 0.79831 0.80493 1.18585 1.18293 1.16208 1.20903 0.93979 1.02071 0.96128 1.20839 0.93170 0.99953 0.99050 1.21256 0.99535 1.01125 0.93690 1.21373 0.96715 0.98767 0.96324 1.20877 0.91975 1.00677 0.99630 1.20735 0.96445 0.97438 0.92769 0.92219 0.92215 0.92060 0.90431 0.93607 0.92054 0.92586 0.87805 0.88046 0.74711 0.86698 0.87318 0.91336 0.88717 0.85234 0.83514 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.85 71.98 0.64 -0.52 16 2 C -0.08 -0.78 2.64 -10.79 -0.03 -0.80 16 3 C -0.15 -1.74 8.66 71.98 0.62 -1.12 16 4 C -0.04 -0.54 2.79 -10.87 -0.03 -0.57 16 5 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 6 C -0.11 -1.56 4.95 31.51 0.16 -1.41 16 7 C 0.18 4.12 3.17 44.91 0.14 4.26 16 8 H 0.07 1.99 7.64 -2.39 -0.02 1.97 16 9 N -0.70 -17.24 5.11 -442.89 -2.26 -19.51 16 10 C 0.54 18.82 7.83 87.65 0.69 19.51 16 11 O -0.56 -24.07 15.36 -3.03 -0.05 -24.11 16 12 C -0.11 -4.25 6.16 71.23 0.44 -3.81 16 13 S -0.17 -8.90 18.55 -56.49 -1.05 -9.95 16 14 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 15 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 16 C 0.05 2.71 5.50 84.86 0.47 3.18 16 17 N -0.92 -56.29 13.97 21.65 0.30 -55.99 16 18 Si 0.91 45.50 27.74 68.60 1.90 47.40 16 19 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 22 C -0.13 -3.18 5.76 -19.59 -0.11 -3.29 16 23 C -0.11 -3.16 10.04 22.30 0.22 -2.94 16 24 C -0.14 -3.21 10.05 22.24 0.22 -2.99 16 25 C -0.11 -2.09 10.05 22.24 0.22 -1.87 16 26 C -0.11 -1.93 9.18 22.30 0.20 -1.72 16 27 C -0.07 -1.36 4.42 -19.59 -0.09 -1.45 16 28 H 0.06 0.47 7.35 -2.39 -0.02 0.45 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.04 0.66 6.65 -2.38 -0.02 0.64 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.67 6.12 -2.39 -0.01 0.65 16 35 H 0.10 1.08 8.04 -2.39 -0.02 1.06 16 36 H 0.10 1.26 5.69 -2.39 -0.01 1.25 16 37 H 0.42 7.45 8.58 -92.71 -0.80 6.66 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 41 H 0.09 3.21 7.86 -2.91 -0.02 3.18 16 42 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.66 8.02 -2.91 -0.02 1.64 16 Total: -1.00 -74.32 367.12 3.47 -70.86 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.17 Total: 17.25 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.45 Total: -25.95 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.96 Total: -75.50 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -74.32 3.47 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345042231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.180 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds