Wall clock time and date at job start Tue Mar 31 2020 13:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47143 * 2 1 4 4 C 1.52998 * 109.47066 * 239.99866 * 2 1 3 5 5 C 1.50708 * 109.47181 * 60.00231 * 4 2 1 6 6 H 1.07995 * 119.99374 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99786 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00623 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99449 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47445 * 60.00081 * 9 7 5 11 11 H 1.48510 * 109.47100 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47391 * 299.99694 * 9 7 5 13 13 C 1.52996 * 109.47046 * 120.00299 * 2 1 3 14 14 N 1.46502 * 109.47011 * 299.99665 * 13 2 1 15 15 C 1.34783 * 120.00038 * 179.97438 * 14 13 2 16 16 O 1.21280 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99812 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.20374 * 299.49026 * 17 15 14 19 19 C 1.54143 * 109.27734 * 58.97559 * 17 15 14 20 20 S 1.83300 * 101.07634 * 148.59596 * 19 17 15 21 21 C 1.77444 * 96.60720 * 335.15637 * 20 19 17 22 22 C 1.38817 * 130.56534 * 195.27964 * 21 20 19 23 23 C 1.38029 * 120.16179 * 179.68383 * 22 21 20 24 24 C 1.38325 * 119.28853 * 0.02562 * 23 22 21 25 25 C 1.37698 * 120.54210 * 0.10073 * 24 23 22 26 26 C 1.38881 * 108.28331 * 15.19311 * 21 20 19 27 27 H 1.08997 * 109.47189 * 300.00256 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00122 * 1 2 3 29 29 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46979 * 300.00007 * 3 2 1 32 32 H 1.08997 * 109.47150 * 60.00343 * 3 2 1 33 33 H 1.09001 * 109.47603 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47500 * 300.00477 * 4 2 1 35 35 H 0.96994 * 120.00641 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47191 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47750 * 59.99514 * 13 2 1 38 38 H 0.96998 * 120.00124 * 0.02562 * 14 13 2 39 39 H 1.08996 * 111.10062 * 30.64074 * 19 17 15 40 40 H 1.08997 * 111.13383 * 266.55861 * 19 17 15 41 41 H 1.08002 * 119.92479 * 359.69779 * 22 21 20 42 42 H 1.07993 * 120.35585 * 180.29118 * 23 22 21 43 43 H 1.07999 * 119.72314 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.46629 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4798 6 1 0.9165 0.8670 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 2.6263 -1.5515 -3.8527 9 14 1.2471 0.3980 -5.2571 10 1 1.7421 1.7981 -5.2577 11 1 1.7422 -0.3020 -6.4697 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8768 -0.4915 3.6695 16 8 2.5740 -1.4776 3.7808 17 6 1.3740 0.2186 4.9000 18 1 1.7472 1.2427 4.9006 19 6 -0.1672 0.2386 4.8820 20 16 -0.5410 0.1882 6.6757 21 6 0.9738 -0.5874 7.1783 22 6 1.3175 -1.2085 8.3712 23 6 2.5752 -1.7541 8.5318 24 6 3.4853 -1.6738 7.4932 25 6 3.1450 -1.0554 6.3109 26 6 1.8789 -0.4962 6.1289 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2491 34 1 1.6766 -1.7490 -1.2493 35 1 2.8601 -1.8834 -4.7336 36 1 3.1299 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2493 38 1 0.9937 0.7578 2.3564 39 1 -0.5651 -0.6394 4.3733 40 1 -0.5430 1.1558 4.4285 41 1 0.5991 -1.2653 9.1756 42 1 2.8443 -2.2421 9.4567 43 1 4.4712 -2.0986 7.6111 44 1 3.8690 -1.0030 5.5111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345901454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:46 Heat of formation + Delta-G solvation = -25.342132 kcal Electronic energy + Delta-G solvation = -24188.734085 eV Core-core repulsion = 20810.323745 eV Total energy + Delta-G solvation = -3378.410339 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49268 -38.93258 -37.19513 -34.78566 -33.68049 -32.13132 -31.01790 -29.77744 -27.22330 -26.59155 -26.54897 -25.01965 -23.13958 -22.90503 -21.73424 -20.16568 -18.47087 -17.84993 -17.14976 -16.44248 -16.08676 -15.80716 -15.60437 -14.89308 -14.81372 -14.54834 -14.51502 -13.83145 -13.45400 -13.41136 -13.21433 -13.12423 -12.80765 -12.61903 -12.55065 -12.15786 -12.09793 -11.77335 -11.42369 -11.20729 -11.05468 -10.91471 -10.68870 -10.54954 -10.47493 -10.32192 -10.07774 -9.94448 -9.66028 -9.22030 -9.00876 -8.97145 -8.85988 -8.39833 -7.69100 -6.03864 -4.05635 0.90682 1.15168 1.28710 1.89916 2.58282 3.16925 3.29015 3.34827 3.35845 3.53508 4.06857 4.20631 4.41464 4.50576 4.68351 4.80564 4.91493 5.04640 5.14832 5.25503 5.31467 5.34120 5.42310 5.54164 5.55434 5.66806 5.79590 6.04356 6.08191 6.13513 6.17349 6.20143 6.30529 6.32746 6.45114 6.55871 6.66034 6.69139 6.98725 7.00667 7.05407 7.55953 7.59245 7.70331 7.94154 8.22892 8.35877 8.98879 9.57774 11.07525 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.002587 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.929815 B =10820.653345 C =11478.944614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.128 3.872 14 N -0.717 5.717 15 C 0.516 3.484 16 O -0.529 6.529 17 C -0.074 4.074 18 H 0.122 0.878 19 C -0.079 4.079 20 S -0.141 6.141 21 C -0.076 4.076 22 C -0.096 4.096 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.057 4.057 26 C -0.091 4.091 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.399 0.601 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 4.571 22.811 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.368 5.368 15 C 0.299 3.701 16 O -0.406 6.406 17 C -0.096 4.096 18 H 0.140 0.860 19 C -0.228 4.228 20 S 0.101 5.899 21 C -0.189 4.189 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.076 4.076 26 C -0.097 4.097 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.234 0.766 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.726 4.190 23.311 23.975 hybrid contribution 0.503 0.331 -1.697 1.801 sum -3.223 4.521 21.613 22.315 Atomic orbital electron populations 1.21765 0.95236 1.01206 1.00253 1.20907 0.95489 0.95861 0.95010 1.21766 1.00582 0.95852 1.00257 1.19085 0.96354 0.95217 0.89442 1.21130 1.31345 1.12131 0.90507 0.92309 1.25009 0.95275 0.95061 0.99097 1.69945 1.36823 1.22964 1.23622 0.86711 0.79156 0.79767 0.82658 1.20316 1.21375 1.20310 1.21677 0.99008 0.96065 0.82728 1.46207 1.53020 1.31896 1.05700 1.20074 0.80929 0.84892 0.84212 1.90715 1.37669 1.25861 1.86352 1.20738 0.94670 1.01823 0.92415 0.86005 1.24339 0.95167 1.07794 0.95481 1.86069 1.23096 1.74974 1.05793 1.21964 0.96424 1.02692 0.97772 1.20346 0.97253 0.98702 0.95653 1.21115 0.92941 0.98848 0.99078 1.21038 1.00073 1.00249 0.93205 1.21015 0.95143 0.94543 0.96930 1.20203 0.95231 1.01101 0.93128 0.95302 0.91350 0.93327 0.93332 0.91355 0.95289 0.96351 0.96354 0.92931 0.91659 0.91675 0.76603 0.87585 0.85791 0.85608 0.85190 0.85504 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.29 7.65 -34.44 -0.26 -13.55 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.72 -9.28 4.85 -60.29 -0.29 -9.57 16 15 C 0.52 6.98 6.96 -10.98 -0.08 6.91 16 16 O -0.53 -9.14 13.92 5.56 0.08 -9.07 16 17 C -0.07 -0.79 2.95 -92.24 -0.27 -1.06 16 18 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.08 -0.72 6.80 37.75 0.26 -0.46 16 20 S -0.14 -1.48 23.08 -107.50 -2.48 -3.96 16 21 C -0.08 -0.89 6.48 -39.13 -0.25 -1.14 16 22 C -0.10 -0.98 10.05 -39.44 -0.40 -1.37 16 23 C -0.10 -0.92 10.08 -39.63 -0.40 -1.32 16 24 C -0.13 -1.28 10.00 -39.75 -0.40 -1.68 16 25 C -0.06 -0.69 8.62 -39.27 -0.34 -1.03 16 26 C -0.09 -1.11 5.38 -103.80 -0.56 -1.67 16 27 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.40 4.20 6.03 -40.82 -0.25 3.95 16 39 H 0.11 1.03 7.92 -51.93 -0.41 0.61 16 40 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.72 6.85 -52.48 -0.36 1.36 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -30.83 362.72 -10.43 -41.26 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.50 Total: 2.39 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -2.41 Total: -17.05 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.44 Total: -34.89 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.48 Total: -3.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.83 -10.43 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345901454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.917 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds