Wall clock time and date at job start Tue Mar 31 2020 13:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47143 * 2 1 4 4 C 1.52998 * 109.47066 * 239.99866 * 2 1 3 5 5 C 1.50708 * 109.47181 * 60.00231 * 4 2 1 6 6 H 1.07995 * 119.99374 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99786 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00623 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99449 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47445 * 60.00081 * 9 7 5 11 11 H 1.48510 * 109.47100 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47391 * 299.99694 * 9 7 5 13 13 C 1.52996 * 109.47046 * 120.00299 * 2 1 3 14 14 N 1.46502 * 109.47011 * 299.99665 * 13 2 1 15 15 C 1.34783 * 120.00038 * 179.97438 * 14 13 2 16 16 O 1.21280 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99812 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.20374 * 299.49026 * 17 15 14 19 19 C 1.54143 * 109.27734 * 58.97559 * 17 15 14 20 20 S 1.83300 * 101.07634 * 148.59596 * 19 17 15 21 21 C 1.77444 * 96.60720 * 335.15637 * 20 19 17 22 22 C 1.38817 * 130.56534 * 195.27964 * 21 20 19 23 23 C 1.38029 * 120.16179 * 179.68383 * 22 21 20 24 24 C 1.38325 * 119.28853 * 0.02562 * 23 22 21 25 25 C 1.37698 * 120.54210 * 0.10073 * 24 23 22 26 26 C 1.38881 * 108.28331 * 15.19311 * 21 20 19 27 27 H 1.08997 * 109.47189 * 300.00256 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00122 * 1 2 3 29 29 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46979 * 300.00007 * 3 2 1 32 32 H 1.08997 * 109.47150 * 60.00343 * 3 2 1 33 33 H 1.09001 * 109.47603 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47500 * 300.00477 * 4 2 1 35 35 H 0.96994 * 120.00641 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47191 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47750 * 59.99514 * 13 2 1 38 38 H 0.96998 * 120.00124 * 0.02562 * 14 13 2 39 39 H 1.08996 * 111.10062 * 30.64074 * 19 17 15 40 40 H 1.08997 * 111.13383 * 266.55861 * 19 17 15 41 41 H 1.08002 * 119.92479 * 359.69779 * 22 21 20 42 42 H 1.07993 * 120.35585 * 180.29118 * 23 22 21 43 43 H 1.07999 * 119.72314 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.46629 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4798 6 1 0.9165 0.8670 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 2.6263 -1.5515 -3.8527 9 14 1.2471 0.3980 -5.2571 10 1 1.7421 1.7981 -5.2577 11 1 1.7422 -0.3020 -6.4697 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8768 -0.4915 3.6695 16 8 2.5740 -1.4776 3.7808 17 6 1.3740 0.2186 4.9000 18 1 1.7472 1.2427 4.9006 19 6 -0.1672 0.2386 4.8820 20 16 -0.5410 0.1882 6.6757 21 6 0.9738 -0.5874 7.1783 22 6 1.3175 -1.2085 8.3712 23 6 2.5752 -1.7541 8.5318 24 6 3.4853 -1.6738 7.4932 25 6 3.1450 -1.0554 6.3109 26 6 1.8789 -0.4962 6.1289 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2491 34 1 1.6766 -1.7490 -1.2493 35 1 2.8601 -1.8834 -4.7336 36 1 3.1299 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2493 38 1 0.9937 0.7578 2.3564 39 1 -0.5651 -0.6394 4.3733 40 1 -0.5430 1.1558 4.4285 41 1 0.5991 -1.2653 9.1756 42 1 2.8443 -2.2421 9.4567 43 1 4.4712 -2.0986 7.6111 44 1 3.8690 -1.0030 5.5111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345901454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:45 Heat of formation + Delta-G solvation = -42.179309 kcal Electronic energy + Delta-G solvation = -24189.464200 eV Core-core repulsion = 20810.323745 eV Total energy + Delta-G solvation = -3379.140454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51485 -39.90893 -38.60220 -35.69768 -35.20624 -33.88527 -31.80943 -30.60635 -29.09135 -27.94793 -27.81055 -26.05705 -24.75952 -23.80118 -22.72845 -21.24312 -19.86500 -18.68900 -18.36666 -18.22864 -17.11225 -16.90529 -16.49728 -16.35268 -15.97606 -15.67655 -15.60677 -15.05877 -14.77816 -14.54307 -14.35069 -14.16225 -14.01221 -13.92862 -13.75850 -13.29678 -13.28440 -12.83422 -12.75690 -12.58389 -12.52895 -12.31786 -12.22312 -12.19068 -12.00263 -11.52859 -11.38409 -11.13360 -10.91219 -10.84605 -10.51870 -10.50683 -10.10453 -9.79033 -8.46223 -8.13988 -6.21828 0.11584 0.34836 0.53055 1.11111 1.42777 1.44478 1.51652 1.53309 2.09436 2.44668 2.70828 3.20617 3.26719 3.40843 3.68073 3.89936 3.96891 4.06285 4.09036 4.16627 4.23323 4.38877 4.45923 4.52537 4.56515 4.69322 4.72680 4.76406 4.81363 4.97532 5.00628 5.10972 5.14009 5.25596 5.37861 5.40081 5.45744 5.51836 5.54295 5.55448 5.57516 5.81180 5.90311 5.92476 6.30054 6.51462 6.93632 7.17688 7.46150 8.98338 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.002587 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.929815 B =10820.653345 C =11478.944614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.143 3.857 14 N -0.702 5.702 15 C 0.518 3.482 16 O -0.571 6.571 17 C -0.065 4.065 18 H 0.147 0.853 19 C -0.075 4.075 20 S -0.144 6.144 21 C -0.094 4.094 22 C -0.103 4.103 23 C -0.095 4.095 24 C -0.132 4.132 25 C -0.080 4.080 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.073 0.927 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.415 0.585 39 H 0.099 0.901 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.162 0.838 43 H 0.144 0.856 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 6.812 24.481 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.355 5.355 15 C 0.303 3.697 16 O -0.450 6.450 17 C -0.087 4.087 18 H 0.165 0.835 19 C -0.223 4.223 20 S 0.098 5.902 21 C -0.207 4.207 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.152 4.152 25 C -0.100 4.100 26 C -0.118 4.118 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.254 0.746 39 H 0.118 0.882 40 H 0.178 0.822 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.585 6.475 24.998 26.420 hybrid contribution 1.119 -0.436 -2.127 2.443 sum -4.466 6.039 22.870 24.072 Atomic orbital electron populations 1.21709 0.93455 1.00976 1.01860 1.20694 0.96784 0.96292 0.92620 1.21707 0.99898 0.94562 1.01814 1.18976 0.94231 0.94167 0.92461 1.21570 1.30403 1.12102 0.91039 0.90831 1.25945 0.95689 0.95852 1.02738 1.70109 1.38817 1.24995 1.24137 0.85618 0.78985 0.78780 0.78368 1.19106 1.21853 1.19113 1.21216 0.97835 0.95327 0.83774 1.45922 1.53023 1.32081 1.04449 1.20610 0.79922 0.84291 0.84892 1.90709 1.39452 1.27864 1.86944 1.20752 0.95767 1.02301 0.89842 0.83516 1.24479 0.93649 1.09408 0.94730 1.86037 1.22634 1.74780 1.06782 1.22221 0.96896 1.03285 0.98251 1.20724 0.98058 0.98108 0.95760 1.21488 0.92211 0.97960 0.99803 1.21326 1.01245 0.99734 0.92874 1.21068 0.95337 0.96131 0.97462 1.20434 0.95425 1.01876 0.94071 0.90709 0.92626 0.94551 0.94522 0.92617 0.90806 0.99682 0.99725 0.93204 0.93508 0.93653 0.74633 0.88194 0.82170 0.83786 0.82037 0.83815 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 8.05 71.98 0.58 -3.23 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 3 C -0.12 -3.81 8.05 71.98 0.58 -3.23 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.89 7.65 25.60 0.20 -26.70 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 C 0.14 4.75 4.56 86.38 0.39 5.14 16 14 N -0.70 -16.88 4.85 -463.05 -2.25 -19.13 16 15 C 0.52 13.51 6.96 87.66 0.61 14.12 16 16 O -0.57 -20.14 13.92 -3.03 -0.04 -20.18 16 17 C -0.06 -1.24 2.95 -11.84 -0.03 -1.28 16 18 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.07 -1.12 6.80 72.37 0.49 -0.63 16 20 S -0.14 -2.68 23.08 -56.49 -1.30 -3.99 16 21 C -0.09 -2.05 6.48 22.56 0.15 -1.91 16 22 C -0.10 -1.91 10.05 22.36 0.22 -1.68 16 23 C -0.10 -1.56 10.08 22.24 0.22 -1.33 16 24 C -0.13 -2.59 10.00 22.16 0.22 -2.36 16 25 C -0.08 -1.98 8.62 22.47 0.19 -1.78 16 26 C -0.11 -2.64 5.38 -19.33 -0.10 -2.75 16 27 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 28 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 32 H 0.07 1.63 6.86 -2.39 -0.02 1.61 16 33 H -0.02 -0.85 8.14 -2.39 -0.02 -0.86 16 34 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.42 7.09 6.03 -92.71 -0.56 6.53 16 39 H 0.10 1.67 7.92 -2.39 -0.02 1.65 16 40 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.11 3.13 6.85 -2.91 -0.02 3.11 16 Total: -1.00 -70.87 362.72 3.44 -67.43 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.45 Total: 14.98 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.28 Total: -27.67 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.96 Total: -75.57 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -1.30 Total: -3.99 kcal Total: -70.87 3.44 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345901454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.254 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds