Wall clock time and date at job start Tue Mar 31 2020 13:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46805 * 2 1 4 4 H 1.08997 * 109.87156 * 51.85379 * 3 2 1 5 5 C 1.54328 * 109.87805 * 172.86639 * 3 2 1 6 6 C 1.55161 * 102.94151 * 141.76860 * 5 3 2 7 7 C 1.54913 * 101.57733 * 324.49483 * 6 5 3 8 8 H 1.09005 * 110.36034 * 155.95935 * 7 6 5 9 9 C 1.53001 * 110.36767 * 278.17170 * 7 6 5 10 10 N 1.47021 * 110.01661 * 290.75042 * 3 2 1 11 11 C 1.34774 * 125.64648 * 61.54609 * 10 3 2 12 12 O 1.21553 * 119.99706 * 4.64252 * 11 10 3 13 13 C 1.47860 * 120.00396 * 184.64155 * 11 10 3 14 14 C 1.39677 * 120.09700 * 7.17532 * 13 11 10 15 15 C 1.38041 * 120.03559 * 179.78898 * 14 13 11 16 16 C 1.38172 * 120.24439 * 0.47346 * 15 14 13 17 17 C 1.39177 * 120.20290 * 359.78239 * 16 15 14 18 18 S 1.76204 * 120.02090 * 179.97438 * 17 16 15 19 19 C 1.76204 * 99.99866 * 265.05308 * 18 17 16 20 20 H 1.07991 * 120.00299 * 5.01198 * 19 18 17 21 21 C 1.38726 * 119.99732 * 185.00562 * 19 18 17 22 22 N 1.31625 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00149 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46961 * 89.99722 * 23 21 19 25 25 H 1.48490 * 109.47413 * 210.00162 * 23 21 19 26 26 H 1.48501 * 109.46627 * 330.00373 * 23 21 19 27 27 C 1.38868 * 119.96007 * 359.97438 * 17 16 15 28 28 H 1.08993 * 109.46923 * 319.10964 * 1 2 3 29 29 H 1.09003 * 109.46932 * 79.10947 * 1 2 3 30 30 H 1.08994 * 109.47060 * 199.10408 * 1 2 3 31 31 H 1.09002 * 109.46805 * 240.00291 * 2 1 3 32 32 H 1.08991 * 109.47067 * 120.00423 * 2 1 3 33 33 H 1.09003 * 110.71935 * 260.13152 * 5 3 2 34 34 H 1.08998 * 110.71849 * 23.40290 * 5 3 2 35 35 H 1.08996 * 111.00290 * 82.56806 * 6 5 3 36 36 H 1.09006 * 111.00208 * 206.42471 * 6 5 3 37 37 H 1.08995 * 109.47270 * 58.54769 * 9 7 6 38 38 H 1.09003 * 109.46941 * 178.55466 * 9 7 6 39 39 H 1.08998 * 109.46652 * 298.54787 * 9 7 6 40 40 H 1.07999 * 119.98204 * 0.02562 * 14 13 11 41 41 H 1.08003 * 119.87652 * 180.23373 * 15 14 13 42 42 H 1.08005 * 119.89696 * 179.76462 * 16 15 14 43 43 H 0.97008 * 120.00176 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.12343 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5665 2.0029 0.8062 5 6 3.5726 1.4573 0.1802 6 6 4.0217 2.6087 -0.7579 7 6 3.0186 2.4643 -1.9295 8 1 2.9101 3.4132 -2.4550 9 6 3.4815 1.3717 -2.8953 10 7 1.7462 2.0801 -1.2918 11 6 0.5173 2.2797 -1.8078 12 8 -0.4688 1.9971 -1.1557 13 6 0.3685 2.8423 -3.1670 14 6 1.4925 3.0279 -3.9752 15 6 1.3516 3.5492 -5.2456 16 6 0.1017 3.8986 -5.7199 17 6 -1.0244 3.7229 -4.9212 18 16 -2.6159 4.1707 -5.5306 19 6 -2.7500 5.7983 -4.8690 20 1 -1.9147 6.2388 -4.3451 21 6 -3.9286 6.5141 -5.0214 22 7 -4.9465 5.9775 -5.6606 23 14 -4.0705 8.2399 -4.3208 24 1 -3.6312 9.2258 -5.3407 25 1 -5.4827 8.5085 -3.9487 26 1 -3.2102 8.3572 -3.1160 27 6 -0.8931 3.1945 -3.6437 28 1 -0.3633 0.7768 0.6727 29 1 -0.3633 0.1942 -1.0092 30 1 -0.3633 -0.9710 0.3363 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8372 1.6772 1.2146 34 1 4.0073 0.5095 -0.1370 35 1 3.9137 3.5764 -0.2681 36 1 5.0458 2.4575 -1.0995 37 1 3.5720 0.4272 -2.3590 38 1 2.7531 1.2649 -3.6992 39 1 4.4493 1.6449 -3.3159 40 1 2.4719 2.7598 -3.6074 41 1 2.2220 3.6881 -5.8697 42 1 -0.0016 4.3095 -6.7133 43 1 -5.7707 6.4779 -5.7668 44 1 -1.7653 3.0566 -3.0218 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357165386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:38 Heat of formation + Delta-G solvation = 23.566326 kcal Electronic energy + Delta-G solvation = -24905.311110 eV Core-core repulsion = 21529.021600 eV Total energy + Delta-G solvation = -3376.289510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00702 -38.36243 -37.52058 -34.21601 -32.49160 -32.08045 -31.02192 -30.45091 -29.60767 -26.46311 -25.55203 -24.19203 -22.77256 -22.39496 -21.55269 -20.83576 -19.34709 -18.01439 -17.08172 -16.62673 -16.12535 -15.73656 -15.01764 -14.83607 -14.42152 -14.28294 -14.00992 -13.82003 -13.41368 -13.37084 -13.29520 -13.07353 -12.83732 -12.59416 -12.52927 -12.18153 -12.01601 -11.49694 -11.31275 -11.10099 -11.08359 -11.03884 -10.97721 -10.90795 -10.71923 -10.61429 -10.44259 -9.86617 -9.51461 -9.14495 -8.94258 -8.61008 -8.47928 -7.97147 -6.68877 -6.26952 -4.00605 1.23502 1.71744 2.89737 3.08251 3.20817 3.23858 3.29027 3.49465 4.10972 4.15923 4.20479 4.28309 4.58972 4.71842 4.77978 4.93161 4.96197 5.09314 5.13820 5.23104 5.27262 5.29177 5.34865 5.36832 5.47345 5.49906 5.60090 5.63725 5.68357 5.75389 5.81653 5.90390 5.94591 5.98787 6.04289 6.08471 6.27135 6.31259 6.40837 6.66774 6.68916 6.72552 6.98498 7.26641 7.54807 7.58954 8.34223 8.34688 9.18770 10.79745 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003491 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.526391 B = 8018.054390 C = 8384.836440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.137 3.863 4 H 0.075 0.925 5 C -0.128 4.128 6 C -0.130 4.130 7 C 0.109 3.891 8 H 0.103 0.897 9 C -0.182 4.182 10 N -0.608 5.608 11 C 0.572 3.428 12 O -0.518 6.518 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.144 4.144 16 C -0.057 4.057 17 C -0.108 4.108 18 S -0.036 6.036 19 C -0.519 4.519 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.870 5.870 23 Si 0.920 3.080 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.271 1.271 27 C -0.020 4.020 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.269 0.731 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.868 -9.274 8.195 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.034 3.966 4 H 0.093 0.907 5 C -0.166 4.166 6 C -0.168 4.168 7 C 0.006 3.994 8 H 0.120 0.880 9 C -0.240 4.240 10 N -0.342 5.342 11 C 0.363 3.637 12 O -0.395 6.395 13 C -0.155 4.155 14 C -0.159 4.159 15 C -0.164 4.164 16 C -0.079 4.079 17 C -0.218 4.218 18 S 0.198 5.802 19 C -0.666 4.666 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.506 5.506 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.196 1.196 27 C -0.042 4.042 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.183 0.817 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.079 0.921 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.229 -9.963 7.795 23.017 hybrid contribution 0.760 1.735 1.131 2.206 sum 19.989 -8.229 8.926 23.387 Atomic orbital electron populations 1.22161 0.93959 0.99826 1.04621 1.21957 0.97856 0.95299 1.01594 1.21682 0.94892 0.93775 0.86213 0.90674 1.22719 0.94031 0.99351 1.00490 1.22850 0.98826 0.99362 0.95750 1.22354 0.83812 0.98764 0.94490 0.87978 1.22545 1.02168 0.99306 0.99993 1.48403 1.05024 1.60539 1.20261 1.18057 0.81551 0.77954 0.86103 1.90793 1.37464 1.49963 1.61324 1.19810 0.94994 1.06573 0.94113 1.22961 1.00132 0.98158 0.94615 1.21104 0.97407 1.01776 0.96126 1.21960 0.91584 0.94713 0.99598 1.22809 1.02094 1.00921 0.96017 1.83590 1.09503 1.19601 1.67485 1.22834 1.02601 0.98692 1.42524 0.90685 1.24994 0.94508 0.99089 0.94954 1.69990 1.03685 1.37591 1.39309 0.86130 0.77655 0.82256 0.79346 1.20159 1.20640 1.19598 1.21926 0.96094 0.91620 0.94559 0.92085 0.90420 0.94729 0.92065 0.91635 0.90137 0.90406 0.90384 0.89686 0.91612 0.90310 0.90996 0.81732 0.86083 0.85301 0.92078 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.13 37.16 0.30 -1.73 16 2 C -0.13 -1.36 5.43 -26.73 -0.15 -1.51 16 3 C 0.14 1.44 3.04 -66.95 -0.20 1.24 16 4 H 0.08 0.88 7.98 -51.93 -0.41 0.46 16 5 C -0.13 -0.89 6.10 -24.89 -0.15 -1.04 16 6 C -0.13 -0.88 6.57 -24.58 -0.16 -1.04 16 7 C 0.11 1.00 2.55 -66.42 -0.17 0.83 16 8 H 0.10 0.99 5.70 -51.93 -0.30 0.70 16 9 C -0.18 -1.41 8.43 37.16 0.31 -1.10 16 10 N -0.61 -7.56 2.72 -157.53 -0.43 -7.99 16 11 C 0.57 9.50 7.14 -12.32 -0.09 9.41 16 12 O -0.52 -9.99 11.78 5.32 0.06 -9.93 16 13 C -0.15 -2.62 5.86 -105.00 -0.62 -3.24 16 14 C -0.14 -2.01 6.99 -39.12 -0.27 -2.29 16 15 C -0.14 -2.13 10.02 -39.68 -0.40 -2.52 16 16 C -0.06 -1.05 9.79 -39.26 -0.38 -1.44 16 17 C -0.11 -2.36 5.45 -39.00 -0.21 -2.57 16 18 S -0.04 -0.95 21.41 -107.50 -2.30 -3.26 16 19 C -0.52 -14.85 9.46 30.91 0.29 -14.56 16 20 H 0.07 2.13 7.79 -52.49 -0.41 1.72 16 21 C 0.07 2.08 5.49 -17.46 -0.10 1.99 16 22 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 23 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.02 -0.42 9.34 -38.92 -0.36 -0.79 16 28 H 0.06 0.91 7.16 -51.93 -0.37 0.54 16 29 H 0.08 1.28 5.49 -51.93 -0.28 1.00 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.47 7.47 -51.93 -0.39 0.08 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 38 H 0.08 0.74 5.77 -51.93 -0.30 0.44 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.17 1.78 1.73 -53.64 -0.09 1.69 16 41 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.14 3.09 7.67 -52.48 -0.40 2.69 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.42 355.31 -10.24 -42.66 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.28 Total: 1.83 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.35 Total: -20.34 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.31 Total: -32.97 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.06 Total: -9.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -10.24 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357165386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.226 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds