Wall clock time and date at job start Tue Mar 31 2020 13:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46805 * 2 1 4 4 H 1.08997 * 109.87156 * 51.85379 * 3 2 1 5 5 C 1.54328 * 109.87805 * 172.86639 * 3 2 1 6 6 C 1.55161 * 102.94151 * 141.76860 * 5 3 2 7 7 C 1.54913 * 101.57733 * 324.49483 * 6 5 3 8 8 H 1.09005 * 110.36034 * 155.95935 * 7 6 5 9 9 C 1.53001 * 110.36767 * 278.17170 * 7 6 5 10 10 N 1.47021 * 110.01661 * 290.75042 * 3 2 1 11 11 C 1.34774 * 125.64648 * 61.54609 * 10 3 2 12 12 O 1.21553 * 119.99706 * 4.64252 * 11 10 3 13 13 C 1.47860 * 120.00396 * 184.64155 * 11 10 3 14 14 C 1.39677 * 120.09700 * 7.17532 * 13 11 10 15 15 C 1.38041 * 120.03559 * 179.78898 * 14 13 11 16 16 C 1.38172 * 120.24439 * 0.47346 * 15 14 13 17 17 C 1.39177 * 120.20290 * 359.78239 * 16 15 14 18 18 S 1.76204 * 120.02090 * 179.97438 * 17 16 15 19 19 C 1.76204 * 99.99866 * 265.05308 * 18 17 16 20 20 H 1.07991 * 120.00299 * 5.01198 * 19 18 17 21 21 C 1.38726 * 119.99732 * 185.00562 * 19 18 17 22 22 N 1.31625 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00149 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46961 * 89.99722 * 23 21 19 25 25 H 1.48490 * 109.47413 * 210.00162 * 23 21 19 26 26 H 1.48501 * 109.46627 * 330.00373 * 23 21 19 27 27 C 1.38868 * 119.96007 * 359.97438 * 17 16 15 28 28 H 1.08993 * 109.46923 * 319.10964 * 1 2 3 29 29 H 1.09003 * 109.46932 * 79.10947 * 1 2 3 30 30 H 1.08994 * 109.47060 * 199.10408 * 1 2 3 31 31 H 1.09002 * 109.46805 * 240.00291 * 2 1 3 32 32 H 1.08991 * 109.47067 * 120.00423 * 2 1 3 33 33 H 1.09003 * 110.71935 * 260.13152 * 5 3 2 34 34 H 1.08998 * 110.71849 * 23.40290 * 5 3 2 35 35 H 1.08996 * 111.00290 * 82.56806 * 6 5 3 36 36 H 1.09006 * 111.00208 * 206.42471 * 6 5 3 37 37 H 1.08995 * 109.47270 * 58.54769 * 9 7 6 38 38 H 1.09003 * 109.46941 * 178.55466 * 9 7 6 39 39 H 1.08998 * 109.46652 * 298.54787 * 9 7 6 40 40 H 1.07999 * 119.98204 * 0.02562 * 14 13 11 41 41 H 1.08003 * 119.87652 * 180.23373 * 15 14 13 42 42 H 1.08005 * 119.89696 * 179.76462 * 16 15 14 43 43 H 0.97008 * 120.00176 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.12343 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5665 2.0029 0.8062 5 6 3.5726 1.4573 0.1802 6 6 4.0217 2.6087 -0.7579 7 6 3.0186 2.4643 -1.9295 8 1 2.9101 3.4132 -2.4550 9 6 3.4815 1.3717 -2.8953 10 7 1.7462 2.0801 -1.2918 11 6 0.5173 2.2797 -1.8078 12 8 -0.4688 1.9971 -1.1557 13 6 0.3685 2.8423 -3.1670 14 6 1.4925 3.0279 -3.9752 15 6 1.3516 3.5492 -5.2456 16 6 0.1017 3.8986 -5.7199 17 6 -1.0244 3.7229 -4.9212 18 16 -2.6159 4.1707 -5.5306 19 6 -2.7500 5.7983 -4.8690 20 1 -1.9147 6.2388 -4.3451 21 6 -3.9286 6.5141 -5.0214 22 7 -4.9465 5.9775 -5.6606 23 14 -4.0705 8.2399 -4.3208 24 1 -3.6312 9.2258 -5.3407 25 1 -5.4827 8.5085 -3.9487 26 1 -3.2102 8.3572 -3.1160 27 6 -0.8931 3.1945 -3.6437 28 1 -0.3633 0.7768 0.6727 29 1 -0.3633 0.1942 -1.0092 30 1 -0.3633 -0.9710 0.3363 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8372 1.6772 1.2146 34 1 4.0073 0.5095 -0.1370 35 1 3.9137 3.5764 -0.2681 36 1 5.0458 2.4575 -1.0995 37 1 3.5720 0.4272 -2.3590 38 1 2.7531 1.2649 -3.6992 39 1 4.4493 1.6449 -3.3159 40 1 2.4719 2.7598 -3.6074 41 1 2.2220 3.6881 -5.8697 42 1 -0.0016 4.3095 -6.7133 43 1 -5.7707 6.4779 -5.7668 44 1 -1.7653 3.0566 -3.0218 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357165386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:37 Heat of formation + Delta-G solvation = 4.976304 kcal Electronic energy + Delta-G solvation = -24906.117234 eV Core-core repulsion = 21529.021600 eV Total energy + Delta-G solvation = -3377.095633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.05064 -39.60105 -38.72264 -35.16644 -34.67817 -33.05350 -32.22419 -31.69675 -30.64958 -27.76900 -27.23795 -25.36027 -23.82070 -23.61047 -22.61057 -21.67052 -20.47321 -19.83149 -18.49972 -17.80714 -17.16114 -16.99737 -16.94919 -16.25210 -15.73089 -15.50106 -15.15698 -14.95336 -14.81970 -14.47244 -14.27649 -14.11980 -13.82978 -13.76938 -13.48794 -13.25382 -13.21677 -12.98447 -12.82789 -12.76452 -12.50669 -12.35194 -12.10499 -11.86796 -11.73347 -11.56231 -11.47225 -11.27559 -11.25260 -10.87619 -10.65162 -9.97638 -9.67707 -9.56901 -8.82907 -8.41406 -6.21899 -0.16638 0.24007 1.27084 1.35283 1.43755 1.62618 1.79634 1.92994 2.22512 2.78340 2.91307 3.35674 3.40001 3.50977 3.77760 3.88873 3.94806 4.04493 4.06487 4.19667 4.24724 4.34248 4.43009 4.44052 4.50007 4.60474 4.67159 4.77808 4.85401 4.91450 4.95955 4.98993 5.02714 5.06243 5.14049 5.22867 5.23288 5.29089 5.33564 5.35832 5.46257 5.48749 5.52901 5.57544 5.88317 6.13142 6.45866 6.98489 7.12870 8.65735 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003491 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.526391 B = 8018.054390 C = 8384.836440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.127 3.873 4 H 0.056 0.944 5 C -0.117 4.117 6 C -0.120 4.120 7 C 0.093 3.907 8 H 0.100 0.900 9 C -0.182 4.182 10 N -0.601 5.601 11 C 0.562 3.438 12 O -0.560 6.560 13 C -0.154 4.154 14 C -0.117 4.117 15 C -0.124 4.124 16 C -0.066 4.066 17 C -0.129 4.129 18 S -0.096 6.096 19 C -0.537 4.537 20 H 0.065 0.935 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.048 4.048 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.211 0.789 41 H 0.176 0.824 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.252 -9.187 8.852 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.025 3.975 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.009 4.009 8 H 0.117 0.883 9 C -0.239 4.239 10 N -0.333 5.333 11 C 0.353 3.647 12 O -0.441 6.441 13 C -0.159 4.159 14 C -0.133 4.133 15 C -0.143 4.143 16 C -0.087 4.087 17 C -0.240 4.240 18 S 0.139 5.861 19 C -0.684 4.684 20 H 0.084 0.916 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.070 4.070 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.227 0.773 41 H 0.193 0.807 42 H 0.153 0.847 43 H 0.084 0.916 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 24.667 -9.889 8.446 27.885 hybrid contribution -0.771 1.580 0.994 2.019 sum 23.896 -8.310 9.440 27.003 Atomic orbital electron populations 1.22040 0.96859 0.99368 1.01898 1.21930 0.95049 0.95868 1.03153 1.21928 0.97927 0.93077 0.84595 0.92592 1.22731 0.90300 1.00552 1.01835 1.22873 0.99584 0.99133 0.94203 1.22723 0.82796 0.99184 0.96158 0.88269 1.22541 1.03309 0.99052 0.99003 1.48472 1.04763 1.59093 1.21005 1.18031 0.82681 0.78199 0.85838 1.90785 1.39335 1.51849 1.62135 1.19983 0.94486 1.06119 0.95317 1.23590 1.00763 0.95269 0.93717 1.21632 0.97274 0.98964 0.96404 1.22084 0.91979 0.95103 0.99515 1.22477 1.00423 1.03898 0.97231 1.83455 1.14715 1.19602 1.68325 1.23053 1.02835 0.99810 1.42748 0.91630 1.26013 0.93870 1.03582 0.95024 1.70112 1.04282 1.39458 1.40373 0.85041 0.77998 0.76814 0.78724 1.18448 1.19598 1.19473 1.21593 0.96807 0.94240 0.94328 0.94362 0.93793 0.93781 0.91453 0.88869 0.88391 0.88449 0.90662 0.86255 0.90906 0.92064 0.87388 0.77341 0.80654 0.84746 0.91649 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.13 71.98 0.59 -3.53 16 2 C -0.12 -2.38 5.43 30.60 0.17 -2.22 16 3 C 0.13 2.43 3.04 45.34 0.14 2.57 16 4 H 0.06 1.29 7.98 -2.39 -0.02 1.27 16 5 C -0.12 -1.07 6.10 31.79 0.19 -0.87 16 6 C -0.12 -0.99 6.57 31.99 0.21 -0.78 16 7 C 0.09 1.32 2.55 45.47 0.12 1.44 16 8 H 0.10 1.48 5.70 -2.38 -0.01 1.47 16 9 C -0.18 -1.85 8.43 71.98 0.61 -1.24 16 10 N -0.60 -14.11 2.72 -770.58 -2.10 -16.21 16 11 C 0.56 19.31 7.14 86.79 0.62 19.93 16 12 O -0.56 -23.52 11.78 -3.88 -0.05 -23.56 16 13 C -0.15 -5.51 5.86 -20.11 -0.12 -5.62 16 14 C -0.12 -3.03 6.99 22.57 0.16 -2.87 16 15 C -0.12 -3.23 10.02 22.21 0.22 -3.01 16 16 C -0.07 -2.41 9.79 22.48 0.22 -2.19 16 17 C -0.13 -5.99 5.45 22.65 0.12 -5.87 16 18 S -0.10 -5.41 21.41 -56.49 -1.21 -6.62 16 19 C -0.54 -32.44 9.46 67.94 0.64 -31.80 16 20 H 0.07 3.93 7.79 -2.92 -0.02 3.91 16 21 C 0.02 1.19 5.49 84.84 0.47 1.66 16 22 N -0.91 -55.70 13.22 21.64 0.29 -55.41 16 23 Si 0.99 45.53 29.55 68.60 2.03 47.55 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 C -0.05 -2.16 9.34 22.70 0.21 -1.95 16 28 H 0.04 1.23 7.16 -2.39 -0.02 1.21 16 29 H 0.04 1.56 5.49 -2.48 -0.01 1.55 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.59 7.47 -2.39 -0.02 0.57 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.28 8.04 -2.38 -0.02 0.26 16 37 H 0.07 0.71 7.46 -2.39 -0.02 0.69 16 38 H 0.06 0.87 5.77 -2.39 -0.01 0.86 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.21 3.58 1.73 -4.00 -0.01 3.57 16 41 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 44 H 0.10 5.08 7.67 -2.91 -0.02 5.06 16 Total: -1.00 -80.28 355.31 4.53 -75.76 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.00 Total: 14.84 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 4.56 Total: -36.35 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.81 Total: -71.62 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.21 Total: -6.62 kcal Total: -80.28 4.53 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357165386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.732 kcal (2) G-P(sol) polarization free energy of solvation -80.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds