Wall clock time and date at job start Tue Mar 31 2020 12:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00165 * 2 1 4 4 C 1.38212 * 119.99859 * 180.23264 * 3 2 1 5 5 C 1.38256 * 120.00123 * 359.81416 * 4 3 2 6 6 C 1.38217 * 119.99970 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99812 * 179.81248 * 2 1 3 8 8 C 1.50698 * 120.00210 * 0.02562 * 7 2 1 9 9 C 1.53001 * 109.47322 * 114.11158 * 8 7 2 10 10 H 1.08995 * 109.87786 * 52.21994 * 9 8 7 11 11 C 1.54326 * 109.88166 * 173.39846 * 9 8 7 12 12 C 1.55162 * 102.94214 * 141.60516 * 11 9 8 13 13 C 1.54905 * 101.58414 * 324.50064 * 12 11 9 14 14 N 1.47021 * 109.88078 * 291.20247 * 9 8 7 15 15 C 1.34777 * 125.64675 * 61.67879 * 14 9 8 16 16 O 1.21277 * 120.00224 * 358.13342 * 15 14 9 17 17 C 1.50705 * 120.00096 * 178.12922 * 15 14 9 18 18 S 1.81001 * 109.47179 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00056 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99730 * 359.97438 * 19 18 17 21 21 C 1.38793 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00088 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99716 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47046 * 90.00080 * 23 21 19 25 25 H 1.48501 * 109.46722 * 209.99935 * 23 21 19 26 26 H 1.48501 * 109.46878 * 329.99639 * 23 21 19 27 27 H 1.08996 * 109.46772 * 274.35548 * 1 2 3 28 28 H 1.09003 * 109.47081 * 34.35036 * 1 2 3 29 29 H 1.09001 * 109.47024 * 154.35489 * 1 2 3 30 30 H 1.07993 * 119.99788 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.99970 * 179.78678 * 4 3 2 32 32 H 1.08006 * 120.00061 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.99841 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47036 * 234.11175 * 8 7 2 35 35 H 1.09001 * 109.47030 * 354.11072 * 8 7 2 36 36 H 1.08998 * 110.72029 * 259.97278 * 11 9 8 37 37 H 1.09005 * 110.71867 * 23.24851 * 11 9 8 38 38 H 1.08998 * 111.00460 * 206.42338 * 12 11 9 39 39 H 1.09003 * 110.99954 * 82.57224 * 12 11 9 40 40 H 1.09003 * 110.36573 * 278.17086 * 13 12 11 41 41 H 1.08999 * 110.46392 * 155.89059 * 13 12 11 42 42 H 1.08998 * 109.47100 * 300.00553 * 17 15 14 43 43 H 1.09005 * 109.46666 * 60.00155 * 17 15 14 44 44 H 0.97008 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0039 8 6 1.4446 -2.5021 0.0076 9 6 1.7004 -3.2424 -1.3067 10 1 2.7728 -3.3211 -1.4851 11 6 1.0702 -4.6499 -1.2474 12 6 0.5131 -4.8419 -2.6828 13 6 0.0499 -3.4054 -3.0314 14 7 1.0600 -2.5240 -2.4181 15 6 1.3491 -1.2678 -2.8116 16 8 2.1796 -0.6199 -2.2105 17 6 0.6404 -0.6681 -3.9987 18 16 1.2432 1.0163 -4.2737 19 6 0.2746 1.4628 -5.6763 20 1 -0.4289 0.7574 -6.0934 21 6 0.4158 2.7210 -6.2450 22 7 1.2735 3.5804 -5.7370 23 14 -0.6105 3.1940 -7.7325 24 1 -1.8816 3.8142 -7.2799 25 1 0.1441 4.1638 -8.5663 26 1 -0.9098 1.9800 -8.5337 27 1 -0.3633 0.0780 1.0247 28 1 -0.3633 0.8485 -0.5799 29 1 -0.3633 -0.9264 -0.4448 30 1 1.6584 2.1326 0.0004 31 1 4.1205 2.1325 -0.0083 32 1 5.3518 -0.0001 -0.0101 33 1 4.1206 -2.1324 -0.0026 34 1 1.7843 -3.1154 0.8421 35 1 0.3776 -2.3053 0.1120 36 1 1.8267 -5.4020 -1.0235 37 1 0.2646 -4.6812 -0.5138 38 1 -0.3280 -5.5352 -2.6859 39 1 1.2955 -5.1763 -3.3641 40 1 -0.9337 -3.2098 -2.6043 41 1 0.0286 -3.2636 -4.1119 42 1 0.8378 -1.2732 -4.8835 43 1 -0.4324 -0.6437 -3.8071 44 1 1.3725 4.4597 -6.1348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358848798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:04 Heat of formation + Delta-G solvation = -0.944119 kcal Electronic energy + Delta-G solvation = -25533.759112 eV Core-core repulsion = 22156.406750 eV Total energy + Delta-G solvation = -3377.352362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31944 -38.39589 -37.03636 -33.27002 -32.39875 -32.02693 -31.55530 -29.31240 -28.50748 -26.55757 -25.45027 -25.37030 -22.93391 -21.48474 -21.07726 -20.15173 -18.66196 -17.59608 -16.70516 -16.37593 -15.88609 -15.04104 -14.91871 -14.77740 -14.52762 -14.17081 -13.71359 -13.56253 -13.42816 -13.16520 -12.82700 -12.62914 -12.53218 -12.46199 -12.41993 -11.99594 -11.64957 -11.58585 -11.38474 -11.22756 -11.10895 -11.04250 -10.97631 -10.86086 -10.73317 -10.31229 -10.20595 -9.76264 -9.26260 -9.03634 -8.52396 -8.15342 -7.97591 -7.43769 -6.43124 -6.18593 -3.87263 2.05256 2.10666 3.03573 3.23041 3.28281 3.30816 3.32099 3.71760 4.24056 4.33166 4.42960 4.52735 4.77038 5.06381 5.13331 5.16444 5.21298 5.27029 5.35001 5.45726 5.50196 5.53101 5.59484 5.61480 5.67777 5.71591 5.74105 5.77721 5.82835 5.93896 5.95204 6.02733 6.11424 6.16770 6.22251 6.25788 6.35748 6.64392 6.74304 6.75316 7.09274 7.17332 7.28275 7.62250 7.72903 7.88240 8.38057 8.80477 9.26958 10.88537 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.004827 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.751020 B = 5799.152416 C = 7243.729490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.097 4.097 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.043 4.043 8 C -0.096 4.096 9 C 0.145 3.855 10 H 0.073 0.927 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.101 3.899 14 N -0.623 5.623 15 C 0.532 3.468 16 O -0.473 6.473 17 C -0.145 4.145 18 S -0.052 6.052 19 C -0.535 4.535 20 H 0.070 0.930 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.915 3.085 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -16.141 11.842 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.115 4.115 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.043 4.043 8 C -0.134 4.134 9 C 0.041 3.959 10 H 0.091 0.909 11 C -0.166 4.166 12 C -0.171 4.171 13 C -0.022 4.022 14 N -0.362 5.362 15 C 0.320 3.680 16 O -0.344 6.344 17 C -0.296 4.296 18 S 0.174 5.826 19 C -0.684 4.684 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.742 3.258 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.038 -14.884 12.684 19.555 hybrid contribution -1.646 -0.395 -2.012 2.629 sum -1.608 -15.279 10.672 18.706 Atomic orbital electron populations 1.20837 0.92714 1.02712 1.01010 1.19340 0.94692 0.92791 0.99071 1.20736 0.94153 0.96939 0.99670 1.20831 0.94344 0.97312 1.01149 1.20770 0.98542 0.92847 1.01522 1.20498 0.93401 0.96975 1.02299 1.19180 0.93442 0.93294 0.98391 1.21115 1.00860 0.94527 0.96891 1.21544 0.97563 0.90233 0.86534 0.90937 1.22706 1.00818 0.95634 0.97448 1.22759 1.01330 0.96267 0.96698 1.22226 0.92019 0.89137 0.98843 1.48522 1.40016 1.14061 1.33554 1.19909 0.83834 0.79324 0.84934 1.90930 1.32081 1.58832 1.52569 1.23505 1.02860 1.05411 0.97836 1.85358 1.54223 1.03699 1.39279 1.22888 1.26667 1.02632 1.16197 0.91219 1.24954 0.95574 0.95353 0.97573 1.70020 1.33606 1.06623 1.40057 0.86223 0.79764 0.78402 0.81443 1.20318 1.20781 1.19755 0.92372 0.91297 0.92083 0.87194 0.87365 0.87662 0.87985 0.90700 0.90438 0.90292 0.90532 0.90115 0.90671 0.91836 0.90663 0.90040 0.90129 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.32 36.01 0.34 -1.41 16 2 C -0.06 -0.99 3.70 -104.62 -0.39 -1.37 16 3 C -0.10 -1.74 9.22 -39.58 -0.36 -2.11 16 4 C -0.12 -2.06 9.98 -39.58 -0.40 -2.45 16 5 C -0.12 -1.94 9.91 -39.58 -0.39 -2.34 16 6 C -0.11 -1.77 8.23 -39.58 -0.33 -2.10 16 7 C -0.04 -0.66 3.03 -104.62 -0.32 -0.98 16 8 C -0.10 -1.16 4.67 -27.88 -0.13 -1.29 16 9 C 0.15 1.71 3.07 -66.95 -0.21 1.50 16 10 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 11 C -0.13 -1.03 6.48 -24.89 -0.16 -1.19 16 12 C -0.13 -1.06 7.08 -24.58 -0.17 -1.24 16 13 C 0.10 1.10 6.71 -2.53 -0.02 1.08 16 14 N -0.62 -8.77 3.06 -163.02 -0.50 -9.27 16 15 C 0.53 9.87 7.27 -10.98 -0.08 9.79 16 16 O -0.47 -9.84 9.27 5.56 0.05 -9.79 16 17 C -0.15 -3.01 5.13 36.01 0.18 -2.82 16 18 S -0.05 -1.41 20.57 -107.50 -2.21 -3.62 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.06 0.88 5.97 -51.93 -0.31 0.57 16 30 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 33 H 0.10 1.38 7.90 -52.49 -0.41 0.97 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.93 5.51 -51.93 -0.29 0.64 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.84 7.47 -51.93 -0.39 0.45 16 42 H 0.08 1.63 7.88 -51.92 -0.41 1.22 16 43 H 0.08 1.59 8.14 -51.91 -0.42 1.16 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -33.37 361.29 -10.54 -43.90 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.80 Total: 2.22 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.23 Total: -19.92 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.23 Total: -34.79 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.05 Total: -9.79 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.37 -10.54 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358848798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds