Wall clock time and date at job start Tue Mar 31 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38237 * 120.00352 * 2 1 4 4 C 1.38227 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00445 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00213 * 180.02562 * 5 4 3 7 7 C 1.52992 * 110.39287 * 0.87754 * 6 5 4 8 8 C 1.54284 * 110.34247 * 238.64141 * 6 5 4 9 9 C 1.54389 * 104.96427 * 241.12940 * 8 6 5 10 10 N 1.48150 * 104.72060 * 336.07614 * 9 8 6 11 11 C 1.34772 * 127.83899 * 219.64387 * 10 9 8 12 12 O 1.21283 * 119.99822 * 180.02562 * 11 10 9 13 13 C 1.50704 * 120.00052 * 0.02562 * 11 10 9 14 14 S 1.81001 * 109.47027 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99795 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00167 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00123 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47474 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46929 * 120.00728 * 19 17 15 22 22 H 1.48499 * 109.47485 * 240.00204 * 19 17 15 23 23 C 1.48437 * 104.17745 * 39.57128 * 10 9 8 24 24 C 1.38236 * 119.99483 * 0.27586 * 5 4 3 25 25 C 1.38230 * 120.00166 * 359.53543 * 24 5 4 26 26 H 1.09004 * 109.47206 * 89.99932 * 1 2 3 27 27 H 1.08995 * 109.48058 * 210.00419 * 1 2 3 28 28 H 1.09007 * 109.47251 * 330.00378 * 1 2 3 29 29 H 1.07998 * 119.99848 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.99960 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46944 * 297.77151 * 7 6 5 32 32 H 1.08998 * 109.47219 * 57.76208 * 7 6 5 33 33 H 1.08995 * 109.47649 * 177.76876 * 7 6 5 34 34 H 1.09001 * 110.33914 * 122.26033 * 8 6 5 35 35 H 1.09000 * 110.43394 * 0.05175 * 8 6 5 36 36 H 1.09002 * 110.40334 * 94.91773 * 9 8 6 37 37 H 1.08994 * 110.40847 * 217.23221 * 9 8 6 38 38 H 1.09000 * 109.47071 * 300.00140 * 13 11 10 39 39 H 1.09004 * 109.46826 * 60.00063 * 13 11 10 40 40 H 0.96995 * 120.00688 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.38920 * 201.64897 * 23 10 9 42 42 H 1.08993 * 110.49431 * 79.28782 * 23 10 9 43 43 H 1.08008 * 119.99714 * 179.72972 * 24 5 4 44 44 H 1.08003 * 120.00403 * 180.22831 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7786 -0.0001 0.0028 7 6 6.3118 1.4337 0.0245 8 6 6.3159 -0.7535 -1.2318 9 6 7.1293 -1.9329 -0.6563 10 7 7.5170 -1.4942 0.7046 11 6 8.6936 -1.6892 1.3322 12 8 8.8586 -1.2655 2.4566 13 6 9.8042 -2.4337 0.6369 14 16 11.2433 -2.5295 1.7305 15 6 12.3549 -3.4231 0.6958 16 1 12.0446 -3.7300 -0.2920 17 6 13.6296 -3.7317 1.1500 18 7 14.0080 -3.3572 2.3538 19 14 14.8082 -4.6785 0.0528 20 1 14.1462 -4.9791 -1.2419 21 1 16.0231 -3.8599 -0.1912 22 1 15.1929 -5.9486 0.7191 23 6 6.3144 -0.7904 1.2161 24 6 3.5804 -1.1972 -0.0036 25 6 2.1981 -1.1972 -0.0002 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3635 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 5.9902 1.9546 -0.8774 32 1 5.9239 1.9523 0.9012 33 1 7.4008 1.4159 0.0651 34 1 6.9596 -0.1019 -1.8227 35 1 5.4909 -1.1234 -1.8406 36 1 6.5129 -2.8305 -0.6052 37 1 8.0156 -2.1155 -1.2637 38 1 9.4676 -3.4405 0.3897 39 1 10.0776 -1.9073 -0.2776 40 1 14.8987 -3.5732 2.6714 41 1 6.5871 -0.1097 2.0226 42 1 5.5701 -1.5080 1.5610 43 1 4.1204 -2.1326 -0.0072 44 1 1.6580 -2.1325 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364291461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:40 Heat of formation + Delta-G solvation = -17.514201 kcal Electronic energy + Delta-G solvation = -23746.877702 eV Core-core repulsion = 20368.806807 eV Total energy + Delta-G solvation = -3378.070895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68982 -39.11836 -37.42012 -34.13335 -32.42854 -31.67238 -31.27953 -29.67085 -29.39833 -27.07234 -26.12215 -25.41308 -23.48647 -22.56318 -21.85653 -19.46302 -19.35548 -17.71474 -16.95121 -16.58548 -15.62575 -15.50409 -15.10372 -14.95791 -14.80390 -14.27696 -14.13567 -13.94735 -13.85430 -13.77534 -13.38297 -13.27925 -12.69604 -12.59934 -12.52532 -12.34342 -12.02312 -11.97299 -11.72272 -11.66839 -11.39314 -11.16926 -11.07078 -11.00972 -10.87399 -10.73587 -10.72227 -9.80256 -9.40213 -9.14945 -9.07378 -8.73302 -8.52994 -8.22452 -6.49962 -6.21575 -3.92133 1.07090 1.17398 2.90052 3.07170 3.21536 3.26213 3.31240 3.47200 3.61667 4.20109 4.29514 4.41586 4.47596 4.62263 4.65958 4.76867 4.83378 4.98919 5.04294 5.12166 5.13653 5.17677 5.22401 5.25304 5.43037 5.45483 5.47528 5.51182 5.61581 5.66597 5.68758 5.76622 5.80229 5.84740 5.86871 5.92232 5.94191 6.01808 6.13915 6.20479 6.34935 6.40456 6.42349 6.77402 7.59966 7.74427 8.35579 8.57405 9.23738 10.85923 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.035011 B = 0.002317 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.554606 B =12083.968141 C =12246.706189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.069 4.069 6 C -0.036 4.036 7 C -0.139 4.139 8 C -0.122 4.122 9 C 0.100 3.900 10 N -0.629 5.629 11 C 0.554 3.446 12 O -0.516 6.516 13 C -0.146 4.146 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.119 3.881 24 C -0.110 4.110 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.094 7.395 -9.284 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.069 4.069 6 C -0.037 4.037 7 C -0.196 4.196 8 C -0.161 4.161 9 C -0.023 4.023 10 N -0.366 5.366 11 C 0.343 3.657 12 O -0.390 6.390 13 C -0.297 4.297 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.004 4.004 24 C -0.128 4.128 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.140 0.860 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.568 7.999 -7.402 27.794 hybrid contribution 0.525 -1.154 -2.057 2.416 sum -25.043 6.845 -9.459 27.631 Atomic orbital electron populations 1.20785 0.91394 1.02708 1.02198 1.19924 0.95984 0.93309 1.00117 1.21019 0.94164 0.97440 1.01163 1.21173 0.93980 0.98004 0.99925 1.19689 0.94024 0.93267 0.99942 1.20402 0.90669 0.96756 0.95867 1.21931 1.01696 0.94119 1.01867 1.22721 0.99838 0.97025 0.96486 1.22374 0.99457 0.96775 0.83740 1.49056 1.12954 1.57712 1.16897 1.19987 0.80841 0.79087 0.85752 1.90712 1.80076 1.49756 1.18444 1.23501 0.99604 1.01973 1.04572 1.85413 1.03613 1.73878 1.20515 1.22896 1.00525 1.41367 1.03432 0.90887 1.24998 0.97329 0.95795 0.95520 1.70026 1.19642 1.43984 1.16611 0.86112 0.80106 0.79259 0.79985 1.19618 1.20568 1.20560 1.22422 0.86746 0.95467 0.95813 1.21012 0.94036 0.97787 0.99976 1.21005 0.94088 0.97496 1.01044 0.91305 0.91614 0.91652 0.86251 0.85540 0.92106 0.92058 0.91701 0.90345 0.90108 0.91223 0.89821 0.89316 0.89314 0.92232 0.89718 0.91177 0.85952 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.74 5.88 -104.63 -0.62 -1.36 16 3 C -0.12 -0.96 9.70 -39.59 -0.38 -1.35 16 4 C -0.11 -0.97 9.03 -39.59 -0.36 -1.33 16 5 C -0.07 -0.63 4.73 -104.63 -0.50 -1.13 16 6 C -0.04 -0.35 0.87 -154.26 -0.13 -0.49 16 7 C -0.14 -1.32 6.88 37.15 0.26 -1.06 16 8 C -0.12 -1.10 6.07 -25.33 -0.15 -1.26 16 9 C 0.10 1.08 6.91 -2.41 -0.02 1.06 16 10 N -0.63 -9.26 3.33 -169.06 -0.56 -9.82 16 11 C 0.55 10.92 7.94 -10.99 -0.09 10.83 16 12 O -0.52 -12.22 16.15 5.55 0.09 -12.13 16 13 C -0.15 -3.03 5.13 36.01 0.18 -2.85 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.12 1.49 6.06 -2.24 -0.01 1.48 16 24 C -0.11 -0.97 8.11 -39.59 -0.32 -1.29 16 25 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.09 -51.92 -0.42 -0.10 16 29 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.94 5.99 -52.48 -0.31 0.63 16 31 H 0.06 0.48 7.67 -51.93 -0.40 0.09 16 32 H 0.06 0.55 7.48 -51.93 -0.39 0.17 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 35 H 0.08 0.63 7.33 -51.93 -0.38 0.24 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.71 7.95 -51.91 -0.41 1.29 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.20 7.61 -51.93 -0.40 0.81 16 42 H 0.07 0.83 6.89 -51.93 -0.36 0.47 16 43 H 0.12 0.99 7.74 -52.48 -0.41 0.59 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -34.35 370.81 -10.10 -44.45 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.75 Total: -1.71 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.96 Total: -13.39 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.17 Total: -35.37 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.35 -10.10 -44.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364291461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.936 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds