Wall clock time and date at job start Tue Mar 31 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38237 * 120.00352 * 2 1 4 4 C 1.38227 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00445 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00213 * 180.02562 * 5 4 3 7 7 C 1.52992 * 110.39287 * 0.87754 * 6 5 4 8 8 C 1.54284 * 110.34247 * 238.64141 * 6 5 4 9 9 C 1.54389 * 104.96427 * 241.12940 * 8 6 5 10 10 N 1.48150 * 104.72060 * 336.07614 * 9 8 6 11 11 C 1.34772 * 127.83899 * 219.64387 * 10 9 8 12 12 O 1.21283 * 119.99822 * 180.02562 * 11 10 9 13 13 C 1.50704 * 120.00052 * 0.02562 * 11 10 9 14 14 S 1.81001 * 109.47027 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99795 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00167 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00123 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47474 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46929 * 120.00728 * 19 17 15 22 22 H 1.48499 * 109.47485 * 240.00204 * 19 17 15 23 23 C 1.48437 * 104.17745 * 39.57128 * 10 9 8 24 24 C 1.38236 * 119.99483 * 0.27586 * 5 4 3 25 25 C 1.38230 * 120.00166 * 359.53543 * 24 5 4 26 26 H 1.09004 * 109.47206 * 89.99932 * 1 2 3 27 27 H 1.08995 * 109.48058 * 210.00419 * 1 2 3 28 28 H 1.09007 * 109.47251 * 330.00378 * 1 2 3 29 29 H 1.07998 * 119.99848 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.99960 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46944 * 297.77151 * 7 6 5 32 32 H 1.08998 * 109.47219 * 57.76208 * 7 6 5 33 33 H 1.08995 * 109.47649 * 177.76876 * 7 6 5 34 34 H 1.09001 * 110.33914 * 122.26033 * 8 6 5 35 35 H 1.09000 * 110.43394 * 0.05175 * 8 6 5 36 36 H 1.09002 * 110.40334 * 94.91773 * 9 8 6 37 37 H 1.08994 * 110.40847 * 217.23221 * 9 8 6 38 38 H 1.09000 * 109.47071 * 300.00140 * 13 11 10 39 39 H 1.09004 * 109.46826 * 60.00063 * 13 11 10 40 40 H 0.96995 * 120.00688 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.38920 * 201.64897 * 23 10 9 42 42 H 1.08993 * 110.49431 * 79.28782 * 23 10 9 43 43 H 1.08008 * 119.99714 * 179.72972 * 24 5 4 44 44 H 1.08003 * 120.00403 * 180.22831 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7786 -0.0001 0.0028 7 6 6.3118 1.4337 0.0245 8 6 6.3159 -0.7535 -1.2318 9 6 7.1293 -1.9329 -0.6563 10 7 7.5170 -1.4942 0.7046 11 6 8.6936 -1.6892 1.3322 12 8 8.8586 -1.2655 2.4566 13 6 9.8042 -2.4337 0.6369 14 16 11.2433 -2.5295 1.7305 15 6 12.3549 -3.4231 0.6958 16 1 12.0446 -3.7300 -0.2920 17 6 13.6296 -3.7317 1.1500 18 7 14.0080 -3.3572 2.3538 19 14 14.8082 -4.6785 0.0528 20 1 14.1462 -4.9791 -1.2419 21 1 16.0231 -3.8599 -0.1912 22 1 15.1929 -5.9486 0.7191 23 6 6.3144 -0.7904 1.2161 24 6 3.5804 -1.1972 -0.0036 25 6 2.1981 -1.1972 -0.0002 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3635 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 5.9902 1.9546 -0.8774 32 1 5.9239 1.9523 0.9012 33 1 7.4008 1.4159 0.0651 34 1 6.9596 -0.1019 -1.8227 35 1 5.4909 -1.1234 -1.8406 36 1 6.5129 -2.8305 -0.6052 37 1 8.0156 -2.1155 -1.2637 38 1 9.4676 -3.4405 0.3897 39 1 10.0776 -1.9073 -0.2776 40 1 14.8987 -3.5732 2.6714 41 1 6.5871 -0.1097 2.0226 42 1 5.5701 -1.5080 1.5610 43 1 4.1204 -2.1326 -0.0072 44 1 1.6580 -2.1325 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364291461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:40 Heat of formation + Delta-G solvation = -36.702551 kcal Electronic energy + Delta-G solvation = -23747.709771 eV Core-core repulsion = 20368.806807 eV Total energy + Delta-G solvation = -3378.902964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59391 -40.20635 -38.53916 -35.08919 -34.59706 -32.43974 -31.98726 -30.88628 -30.52337 -27.85559 -27.64906 -26.92921 -24.47785 -23.18630 -22.53210 -20.79776 -20.25167 -19.56257 -18.12600 -17.75568 -16.89920 -16.67813 -16.53700 -16.18182 -15.75422 -15.70399 -15.30317 -14.85319 -14.69633 -14.55835 -14.45969 -14.25136 -14.01569 -13.74234 -13.49862 -13.20738 -13.15052 -13.03940 -12.92112 -12.75868 -12.62209 -12.58478 -12.41548 -12.05816 -11.95478 -11.74628 -11.53966 -11.44504 -11.16900 -10.99127 -10.29299 -9.83510 -9.74354 -9.31837 -8.69477 -8.35753 -6.14636 0.43935 0.55946 1.22043 1.41133 1.43766 1.54193 1.56363 2.04356 2.25987 2.83053 2.98402 3.22987 3.48706 3.57330 3.67891 3.91792 3.99499 4.06593 4.13181 4.20529 4.23759 4.25630 4.30836 4.42753 4.55224 4.60744 4.64725 4.65802 4.76842 4.81980 4.86915 4.91010 4.95054 5.00613 5.01397 5.16088 5.20988 5.25521 5.28162 5.37989 5.40959 5.62655 5.76149 5.77306 6.17611 6.19044 6.41723 7.05300 7.08451 8.73849 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.035011 B = 0.002317 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.554606 B =12083.968141 C =12246.706189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.121 4.121 5 C -0.079 4.079 6 C -0.025 4.025 7 C -0.138 4.138 8 C -0.114 4.114 9 C 0.092 3.908 10 N -0.621 5.621 11 C 0.552 3.448 12 O -0.569 6.569 13 C -0.118 4.118 14 S -0.152 6.152 15 C -0.544 4.544 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.115 3.885 24 C -0.118 4.118 25 C -0.128 4.128 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.955 6.824 -12.075 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.080 4.080 6 C -0.026 4.026 7 C -0.195 4.195 8 C -0.152 4.152 9 C -0.030 4.030 10 N -0.356 5.356 11 C 0.341 3.659 12 O -0.448 6.448 13 C -0.269 4.269 14 S 0.075 5.925 15 C -0.692 4.692 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.007 4.007 24 C -0.136 4.136 25 C -0.146 4.146 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.489 7.432 -10.242 30.262 hybrid contribution 0.900 -0.923 -1.203 1.763 sum -26.589 6.510 -11.445 29.670 Atomic orbital electron populations 1.20827 0.89865 1.03390 1.02944 1.20259 0.97280 0.93200 0.99196 1.21277 0.94113 0.98346 1.00886 1.21342 0.94490 0.98180 0.99835 1.19615 0.93267 0.93822 1.01263 1.20273 0.91339 0.96314 0.94670 1.21921 1.00223 0.94390 1.02931 1.22711 1.00221 0.96171 0.96111 1.22742 1.00387 0.98451 0.81416 1.48968 1.11842 1.56429 1.18315 1.19738 0.81996 0.78976 0.85198 1.90688 1.81298 1.52146 1.20640 1.23289 0.96879 1.03565 1.03201 1.85613 1.07912 1.74433 1.24494 1.23215 1.00953 1.41348 1.03664 0.89855 1.26160 0.99343 0.96691 0.97078 1.70191 1.20348 1.45440 1.18827 0.84878 0.77237 0.77502 0.78153 1.17923 1.19905 1.19896 1.22605 0.85838 0.95548 0.96714 1.21140 0.94493 0.97853 1.00066 1.21249 0.94058 0.98362 1.00893 0.90434 0.91030 0.90943 0.84675 0.84777 0.90145 0.92003 0.93828 0.89862 0.87998 0.88952 0.89303 0.87497 0.87495 0.91966 0.92038 0.90162 0.85393 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.23 0.71 -0.30 16 2 C -0.10 -1.36 5.88 -19.87 -0.12 -1.47 16 3 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 4 C -0.12 -1.86 9.03 22.27 0.20 -1.66 16 5 C -0.08 -1.31 4.73 -19.87 -0.09 -1.40 16 6 C -0.02 -0.45 0.87 -52.02 -0.05 -0.50 16 7 C -0.14 -2.48 6.88 71.98 0.50 -1.99 16 8 C -0.11 -1.75 6.07 31.50 0.19 -1.56 16 9 C 0.09 1.76 6.91 86.53 0.60 2.36 16 10 N -0.62 -17.85 3.33 -807.19 -2.69 -20.54 16 11 C 0.55 22.06 7.94 87.66 0.70 22.76 16 12 O -0.57 -28.20 16.15 -3.04 -0.05 -28.25 16 13 C -0.12 -4.91 5.13 71.24 0.37 -4.54 16 14 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 15 C -0.54 -31.37 9.50 67.95 0.65 -30.72 16 16 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 17 C 0.01 0.68 5.49 84.86 0.47 1.15 16 18 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 19 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 C 0.12 2.85 6.06 86.48 0.52 3.38 16 24 C -0.12 -1.82 8.11 22.27 0.18 -1.64 16 25 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 26 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 28 H 0.07 0.54 8.09 -2.38 -0.02 0.52 16 29 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.13 1.76 5.99 -2.91 -0.02 1.75 16 31 H 0.08 1.13 7.67 -2.39 -0.02 1.11 16 32 H 0.06 1.09 7.48 -2.39 -0.02 1.08 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.24 7.71 -2.39 -0.02 1.22 16 35 H 0.10 1.20 7.33 -2.39 -0.02 1.19 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.65 7.30 -2.39 -0.02 1.63 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.11 4.02 7.95 -2.39 -0.02 4.00 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 41 H 0.06 1.82 7.61 -2.39 -0.02 1.80 16 42 H 0.08 1.83 6.89 -2.39 -0.02 1.82 16 43 H 0.13 1.76 7.74 -2.91 -0.02 1.74 16 44 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -77.18 370.81 4.65 -72.53 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.98 Total: 15.74 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.25 Total: -19.31 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.40 Total: -76.75 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -77.18 4.65 -72.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364291461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.830 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds