Wall clock time and date at job start Tue Mar 31 2020 12:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38243 * 120.00164 * 2 1 4 4 C 1.38231 * 119.99995 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00077 * 359.94596 * 4 3 2 6 6 C 1.50705 * 119.99772 * 180.02562 * 5 4 3 7 7 H 1.08991 * 110.91548 * 3.89990 * 6 5 4 8 8 C 1.55164 * 110.99901 * 239.99726 * 6 5 4 9 9 C 1.54323 * 102.94014 * 206.42175 * 8 6 5 10 10 H 1.09002 * 109.88393 * 262.77928 * 9 8 6 11 11 C 1.53003 * 109.88139 * 141.76813 * 9 8 6 12 12 N 1.47021 * 107.27098 * 22.19783 * 9 8 6 13 13 C 1.34777 * 125.64945 * 181.03173 * 12 9 8 14 14 O 1.21287 * 119.99819 * 0.02562 * 13 12 9 15 15 C 1.50697 * 120.00034 * 180.02562 * 13 12 9 16 16 S 1.81005 * 109.47172 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00182 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99766 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00124 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46788 * 120.00388 * 21 19 17 24 24 H 1.48506 * 109.47064 * 239.99835 * 21 19 17 25 25 C 1.47423 * 108.70227 * 1.05637 * 12 9 8 26 26 C 1.38239 * 120.00114 * 0.28239 * 5 4 3 27 27 C 1.38229 * 119.99867 * 359.53232 * 26 5 4 28 28 H 1.08996 * 109.47007 * 90.00369 * 1 2 3 29 29 H 1.08999 * 109.47133 * 210.00356 * 1 2 3 30 30 H 1.09006 * 109.47126 * 330.00618 * 1 2 3 31 31 H 1.07998 * 119.99360 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99775 * 179.97438 * 4 3 2 33 33 H 1.09002 * 110.71540 * 88.06477 * 8 6 5 34 34 H 1.08995 * 110.87180 * 324.85946 * 8 6 5 35 35 H 1.09002 * 109.46917 * 60.31536 * 11 9 8 36 36 H 1.08999 * 109.47171 * 180.31598 * 11 9 8 37 37 H 1.08998 * 109.47003 * 300.31647 * 11 9 8 38 38 H 1.09000 * 109.47168 * 300.00165 * 15 13 12 39 39 H 1.08993 * 109.47196 * 60.00454 * 15 13 12 40 40 H 0.96995 * 119.99860 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36732 * 217.02699 * 25 12 9 42 42 H 1.09001 * 110.46177 * 94.75884 * 25 12 9 43 43 H 1.07995 * 119.99939 * 179.72701 * 26 5 4 44 44 H 1.07996 * 120.00421 * 180.20531 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 0.0001 6 6 5.7787 0.0000 0.0001 7 1 6.1678 1.0158 0.0688 8 6 6.3348 -0.7249 -1.2541 9 6 7.7161 -1.2242 -0.7806 10 1 8.4912 -0.5268 -1.0981 11 6 7.9951 -2.6118 -1.3618 12 7 7.6758 -1.2925 0.6875 13 6 8.6964 -1.6655 1.4848 14 8 9.7617 -1.9814 0.9985 15 6 8.5140 -1.6901 2.9805 16 16 10.0527 -2.2286 3.7672 17 6 9.5688 -2.1664 5.4603 18 1 8.5677 -1.8594 5.7248 19 6 10.4738 -2.5130 6.4539 20 7 11.6938 -2.8876 6.1314 21 14 9.9605 -2.4477 8.2488 22 1 8.5481 -1.9991 8.3438 23 1 10.0918 -3.7991 8.8506 24 1 10.8336 -1.4938 8.9790 25 6 6.3340 -0.8859 1.1430 26 6 3.5805 -1.1972 -0.0047 27 6 2.1982 -1.1972 -0.0003 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6581 2.1324 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 6.4408 -0.0291 -2.0863 34 1 5.6964 -1.5632 -1.5329 35 1 7.9913 -2.5572 -2.4504 36 1 8.9693 -2.9602 -1.0188 37 1 7.2234 -3.3065 -1.0301 38 1 8.2572 -0.6907 3.3317 39 1 7.7126 -2.3826 3.2374 40 1 12.3263 -3.1295 6.8258 41 1 6.4047 -0.3124 2.0673 42 1 5.6995 -1.7603 1.2877 43 1 4.1205 -2.1324 -0.0087 44 1 1.6581 -2.1324 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373357700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:12 Heat of formation + Delta-G solvation = -23.280208 kcal Electronic energy + Delta-G solvation = -23710.858979 eV Core-core repulsion = 20332.538051 eV Total energy + Delta-G solvation = -3378.320928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48740 -39.28673 -37.24668 -33.87142 -32.41815 -32.11569 -31.22132 -30.70608 -28.69215 -26.84781 -25.81329 -25.46539 -23.25775 -22.70050 -21.56553 -20.29236 -18.91129 -17.64081 -17.00189 -16.67207 -15.80164 -15.36515 -15.25224 -14.81862 -14.78165 -14.35892 -14.11730 -13.81995 -13.76888 -13.57563 -13.40174 -12.94081 -12.86929 -12.71145 -12.53804 -12.47542 -12.34469 -11.92957 -11.75944 -11.41134 -11.35353 -11.28618 -11.06318 -10.99875 -10.86281 -10.74835 -10.71548 -9.79148 -9.32499 -9.16862 -9.06297 -8.71159 -8.46718 -8.21268 -6.48731 -6.20675 -3.90940 1.04465 1.15964 2.92897 3.09956 3.22285 3.27088 3.32134 3.44218 3.62675 4.20859 4.26857 4.42746 4.51776 4.59569 4.66747 4.76847 4.90691 4.99106 5.08772 5.10071 5.14544 5.16587 5.24302 5.26197 5.38167 5.44014 5.48597 5.49897 5.61253 5.63502 5.67761 5.71186 5.80191 5.84857 5.89164 5.94741 6.10461 6.16149 6.17191 6.30994 6.33874 6.40065 6.57861 6.75537 7.61082 7.72414 8.36720 8.60591 9.24778 10.86847 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.002915 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.196522 B = 9603.914698 C =11148.892072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.063 4.063 7 H 0.094 0.906 8 C -0.118 4.118 9 C 0.135 3.865 10 H 0.074 0.926 11 C -0.163 4.163 12 N -0.622 5.622 13 C 0.549 3.451 14 O -0.514 6.514 15 C -0.147 4.147 16 S -0.061 6.061 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.110 3.890 26 C -0.109 4.109 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.725 7.004 -15.915 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.074 4.074 6 C -0.082 4.082 7 H 0.112 0.888 8 C -0.155 4.155 9 C 0.032 3.968 10 H 0.093 0.907 11 C -0.221 4.221 12 N -0.360 5.360 13 C 0.338 3.662 14 O -0.388 6.388 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.014 4.014 26 C -0.127 4.127 27 C -0.136 4.136 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.874 6.438 -16.513 26.629 hybrid contribution -1.611 0.428 1.782 2.440 sum -21.485 6.866 -14.731 26.940 Atomic orbital electron populations 1.20792 0.91337 1.02788 1.02223 1.19937 0.96041 0.93284 0.99903 1.21008 0.94121 0.97501 1.01129 1.21046 0.94124 0.97531 1.00018 1.19574 0.94150 0.93329 1.00379 1.21319 0.90964 1.00335 0.95566 0.88807 1.22845 0.95294 1.00353 0.97053 1.21497 0.97100 0.97705 0.80524 0.90748 1.22137 1.03495 0.96215 1.00220 1.48594 1.12311 1.68896 1.06178 1.19990 0.82269 0.75780 0.88149 1.90692 1.25418 1.46647 1.76002 1.23520 1.07729 1.05046 0.93490 1.85383 1.09072 1.87037 1.01937 1.22899 1.01341 1.52660 0.91276 0.90914 1.24995 0.94511 0.94557 0.99558 1.70029 1.04324 1.42249 1.33693 0.86118 0.78676 0.77941 0.82773 1.19605 1.20570 1.20563 1.22351 0.83734 0.97906 0.97384 1.21028 0.94075 0.97811 0.99762 1.21024 0.94121 0.97547 1.00904 0.91273 0.91553 0.91601 0.86165 0.85965 0.90010 0.90159 0.92044 0.90774 0.92667 0.89383 0.89394 0.92253 0.90188 0.91187 0.85847 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.11 -0.92 9.69 -39.59 -0.38 -1.30 16 5 C -0.07 -0.66 5.00 -104.62 -0.52 -1.18 16 6 C -0.06 -0.58 3.26 -89.62 -0.29 -0.87 16 7 H 0.09 0.83 7.97 -51.93 -0.41 0.41 16 8 C -0.12 -1.05 5.89 -24.89 -0.15 -1.19 16 9 C 0.14 1.66 3.45 -66.95 -0.23 1.43 16 10 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.16 -2.01 9.11 37.16 0.34 -1.67 16 12 N -0.62 -9.19 3.07 -163.02 -0.50 -9.69 16 13 C 0.55 10.79 7.66 -10.99 -0.08 10.70 16 14 O -0.51 -11.93 14.91 5.55 0.08 -11.85 16 15 C -0.15 -3.09 5.16 36.00 0.19 -2.91 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.11 1.27 6.09 -2.53 -0.02 1.25 16 26 C -0.11 -0.96 8.30 -39.58 -0.33 -1.29 16 27 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.12 0.85 7.99 -52.49 -0.42 0.43 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.67 6.90 -51.93 -0.36 0.31 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.16 6.90 -51.93 -0.36 0.80 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.94 7.48 -51.93 -0.39 0.55 16 42 H 0.07 0.77 6.66 -51.93 -0.35 0.42 16 43 H 0.12 1.01 7.01 -52.49 -0.37 0.65 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -34.19 372.56 -10.44 -44.62 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.83 Total: -1.30 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.30 Total: -14.43 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.23 Total: -35.31 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.19 -10.44 -44.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373357700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.341 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds