Wall clock time and date at job start Tue Mar 31 2020 12:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 120.00365 * 2 1 4 4 C 1.38230 * 120.00322 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99918 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47022 * 339.99635 * 6 5 4 8 8 N 1.46505 * 109.46976 * 219.99779 * 6 5 4 9 9 C 1.34771 * 119.99973 * 155.00146 * 8 6 5 10 10 O 1.21281 * 119.99995 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00042 * 180.02562 * 9 8 6 12 12 S 1.81400 * 109.47205 * 179.97438 * 11 9 8 13 13 C 1.81398 * 103.00097 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47374 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99848 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00284 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46862 * 59.99957 * 18 16 14 20 20 H 1.48502 * 109.47290 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47124 * 300.00572 * 18 16 14 22 22 C 1.52996 * 109.47193 * 100.00119 * 6 5 4 23 23 C 1.53000 * 117.49997 * 185.00008 * 22 6 5 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 6 25 25 C 1.38235 * 119.99801 * 0.24970 * 5 4 3 26 26 C 1.38237 * 119.99966 * 359.47597 * 25 5 4 27 27 H 1.09001 * 109.46363 * 90.00380 * 1 2 3 28 28 H 1.08994 * 109.47108 * 209.99815 * 1 2 3 29 29 H 1.08994 * 109.46946 * 330.00603 * 1 2 3 30 30 H 1.07998 * 119.99335 * 359.97010 * 3 2 1 31 31 H 1.07997 * 119.99792 * 179.97438 * 4 3 2 32 32 H 0.97007 * 119.99871 * 334.99945 * 8 6 5 33 33 H 1.08999 * 109.46747 * 299.99734 * 11 9 8 34 34 H 1.09001 * 109.47279 * 59.99612 * 11 9 8 35 35 H 1.09000 * 109.47129 * 300.00100 * 13 12 11 36 36 H 1.09005 * 109.47270 * 59.99772 * 13 12 11 37 37 H 0.96997 * 119.99948 * 180.02562 * 17 16 14 38 38 H 1.09008 * 115.56055 * 330.68521 * 22 6 5 39 39 H 1.09002 * 117.49833 * 359.97438 * 23 22 6 40 40 H 1.09002 * 117.49953 * 144.99738 * 23 22 6 41 41 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 42 42 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 43 43 H 1.07998 * 119.99808 * 179.72567 * 25 5 4 44 44 H 1.07997 * 119.99848 * 180.27356 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2718 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1420 0.9656 -0.3510 8 7 6.2671 -1.0581 -0.8873 9 6 7.4890 -0.9577 -1.4469 10 8 8.1842 0.0089 -1.2158 11 6 7.9911 -2.0458 -2.3606 12 16 9.6538 -1.6219 -2.9491 13 6 10.0800 -3.0266 -4.0148 14 6 11.4577 -2.8211 -4.5898 15 1 12.0205 -1.9340 -4.3395 16 6 11.9994 -3.7652 -5.4362 17 7 11.3134 -4.8448 -5.7421 18 14 13.7069 -3.5101 -6.1495 19 1 14.6946 -3.4095 -5.0452 20 1 14.0553 -4.6596 -7.0228 21 1 13.7279 -2.2582 -6.9479 22 6 6.2888 -0.2505 1.4211 23 6 7.7989 -0.1714 1.6537 24 6 7.0934 -1.5289 1.6684 25 6 3.5806 -1.1972 -0.0052 26 6 2.1982 -1.1972 0.0000 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6582 2.1324 -0.0005 31 1 4.1205 2.1324 0.0001 32 1 5.7109 -1.8311 -1.0723 33 1 8.0277 -2.9893 -1.8160 34 1 7.3185 -2.1439 -3.2127 35 1 10.0647 -3.9453 -3.4284 36 1 9.3549 -3.1009 -4.8253 37 1 11.6946 -5.5091 -6.3373 38 1 5.6371 0.0970 2.2229 39 1 8.4291 0.0587 0.7947 40 1 8.1408 0.2285 2.6084 41 1 7.2595 -2.1916 0.8191 42 1 6.9709 -2.0220 2.6327 43 1 4.1206 -2.1324 -0.0097 44 1 1.6582 -2.1325 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:33 Heat of formation + Delta-G solvation = -10.473088 kcal Electronic energy + Delta-G solvation = -23393.173947 eV Core-core repulsion = 20015.408377 eV Total energy + Delta-G solvation = -3377.765569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57687 -40.06938 -38.11074 -35.40932 -35.27720 -33.70619 -31.83662 -31.28656 -30.60585 -29.00860 -25.94303 -25.19703 -23.86390 -23.17414 -22.34683 -21.81653 -20.86249 -18.86122 -18.33656 -17.74912 -17.54322 -17.02475 -16.37931 -16.26836 -16.10756 -15.84544 -15.57042 -15.11557 -14.70437 -14.54181 -14.52124 -14.28936 -14.26547 -14.16206 -13.65959 -13.43432 -13.17710 -12.97428 -12.72231 -12.69726 -12.56554 -12.37456 -12.17666 -12.03398 -11.85128 -11.60872 -11.38416 -11.03530 -10.88685 -10.73640 -10.63653 -10.16449 -9.83117 -9.43981 -8.46824 -8.33256 -6.45525 0.33117 0.49550 0.76886 1.40404 1.43402 1.49867 1.52125 1.99074 2.11697 2.37512 2.79041 2.92283 3.01480 3.49188 3.72991 3.88648 3.92553 4.06216 4.07358 4.08234 4.14164 4.20871 4.27467 4.40326 4.47049 4.57667 4.67922 4.79758 4.85706 4.86834 4.94635 4.94930 4.96248 4.99066 5.14877 5.19820 5.28591 5.34848 5.36331 5.49198 5.57462 5.67859 5.71494 5.90111 6.09432 6.39752 6.60961 7.13830 7.21989 8.78547 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.002387 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.268595 B =11727.948642 C =12403.413076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.101 4.101 6 C 0.223 3.777 7 H 0.079 0.921 8 N -0.706 5.706 9 C 0.538 3.462 10 O -0.546 6.546 11 C -0.119 4.119 12 S -0.266 6.266 13 C 0.084 3.916 14 C -0.538 4.538 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.922 5.922 18 Si 0.974 3.026 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.268 1.268 22 C -0.152 4.152 23 C -0.199 4.199 24 C -0.167 4.167 25 C -0.110 4.110 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.414 0.586 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.271 0.729 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.929 6.994 15.306 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.102 4.102 6 C 0.118 3.882 7 H 0.097 0.903 8 N -0.360 5.360 9 C 0.324 3.676 10 O -0.423 6.423 11 C -0.270 4.270 12 S -0.040 6.040 13 C -0.064 4.064 14 C -0.577 4.577 15 H 0.076 0.924 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.797 3.203 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.193 1.193 22 C -0.171 4.171 23 C -0.236 4.236 24 C -0.205 4.205 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.252 0.748 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.151 0.849 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.855 8.415 15.607 28.926 hybrid contribution 0.111 -1.501 -0.896 1.752 sum -22.744 6.913 14.711 27.955 Atomic orbital electron populations 1.20847 0.89598 1.03688 1.02989 1.20309 0.97450 0.93106 0.98381 1.21258 0.93713 0.98651 1.00716 1.21163 0.94839 0.97586 0.99622 1.19690 0.93085 0.94536 1.02863 1.19191 0.89833 0.91259 0.87871 0.90250 1.45901 1.16690 1.25198 1.48231 1.19765 0.81698 0.86408 0.79710 1.90671 1.56866 1.33365 1.61391 1.23398 0.98684 1.02013 1.02900 1.87217 1.18264 1.36225 1.62324 1.20828 0.99238 0.91780 0.94544 1.20922 1.00597 1.06846 1.29306 0.92372 1.25862 1.02418 0.94241 0.95912 1.70032 1.39613 1.10362 1.36095 0.85363 0.78331 0.78130 0.78446 1.19255 1.19863 1.19292 1.22697 0.93920 1.03380 0.97091 1.23259 0.95181 1.01604 1.03546 1.22967 1.03600 0.90642 1.03247 1.21076 0.94682 0.97533 0.99550 1.21288 0.93890 0.98567 1.00496 0.90590 0.90616 0.90711 0.84367 0.85381 0.74830 0.85931 0.86101 0.96189 0.96269 0.92025 0.85932 0.89370 0.88287 0.89544 0.87481 0.84901 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 2 C -0.09 -1.21 5.88 -19.86 -0.12 -1.33 16 3 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 4 C -0.11 -1.87 9.67 22.27 0.22 -1.65 16 5 C -0.10 -1.76 4.91 -19.87 -0.10 -1.85 16 6 C 0.22 4.67 2.61 44.24 0.12 4.78 16 7 H 0.08 2.03 7.44 -2.39 -0.02 2.01 16 8 N -0.71 -15.33 3.69 -446.11 -1.65 -16.98 16 9 C 0.54 16.44 6.53 87.66 0.57 17.01 16 10 O -0.55 -21.03 12.85 -3.03 -0.04 -21.07 16 11 C -0.12 -3.84 6.42 71.24 0.46 -3.39 16 12 S -0.27 -12.24 20.79 -56.49 -1.17 -13.42 16 13 C 0.08 4.46 5.70 71.23 0.41 4.87 16 14 C -0.54 -31.33 9.13 25.60 0.23 -31.10 16 15 H 0.06 3.42 7.71 -2.91 -0.02 3.40 16 16 C 0.02 0.95 5.46 84.65 0.46 1.41 16 17 N -0.92 -54.03 13.29 21.45 0.28 -53.75 16 18 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C -0.15 -3.05 5.72 -10.77 -0.06 -3.11 16 23 C -0.20 -4.95 9.84 30.60 0.30 -4.65 16 24 C -0.17 -3.50 9.68 30.62 0.30 -3.20 16 25 C -0.11 -1.63 9.06 22.27 0.20 -1.43 16 26 C -0.12 -1.65 9.70 22.27 0.22 -1.44 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 30 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.13 1.92 8.04 -2.91 -0.02 1.89 16 32 H 0.41 6.68 6.85 -92.70 -0.64 6.05 16 33 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.12 2.12 8.07 -2.38 -0.02 2.10 16 39 H 0.09 2.88 5.26 -2.39 -0.01 2.87 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 1.94 6.40 -2.39 -0.02 1.93 16 42 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.13 1.57 6.90 -2.91 -0.02 1.55 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.23 375.78 3.95 -66.28 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.36 Total: 19.49 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.13 Total: -26.84 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.36 Total: -70.73 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -12.24 SS G_CDS: -1.17 Total: -13.42 kcal Total: -70.23 3.95 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.809 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds