Wall clock time and date at job start Tue Mar 31 2020 12:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.87167 * 2 1 4 4 C 1.54318 * 109.88855 * 238.81909 * 2 1 3 5 5 H 1.09009 * 110.71923 * 336.75516 * 4 2 1 6 6 C 1.50700 * 110.72078 * 100.02631 * 4 2 1 7 7 C 1.38234 * 120.00093 * 255.18802 * 6 4 2 8 8 C 1.38236 * 120.00247 * 179.76691 * 7 6 4 9 9 C 1.38234 * 119.99424 * 0.50485 * 8 7 6 10 10 C 1.38235 * 120.00160 * 359.74741 * 9 8 7 11 11 C 1.38234 * 120.00338 * 0.02562 * 10 9 8 12 12 C 1.55153 * 102.94518 * 218.39360 * 4 2 1 13 13 C 1.54910 * 101.58312 * 35.49887 * 12 4 2 14 14 N 1.47023 * 109.87686 * 121.00889 * 2 1 3 15 15 C 1.34771 * 125.65121 * 298.39443 * 14 2 1 16 16 O 1.21280 * 120.00199 * 0.02562 * 15 14 2 17 17 C 1.50703 * 120.00003 * 180.02562 * 15 14 2 18 18 S 1.81002 * 109.46936 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99818 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00432 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00340 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99819 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47013 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47261 * 119.99925 * 23 21 19 26 26 H 1.48504 * 109.46752 * 240.00135 * 23 21 19 27 27 H 1.08995 * 109.48032 * 300.44239 * 1 2 3 28 28 H 1.09000 * 109.47053 * 180.44131 * 1 2 3 29 29 H 1.09002 * 109.46680 * 60.44852 * 1 2 3 30 30 H 1.08994 * 109.47209 * 55.80799 * 3 2 1 31 31 H 1.09001 * 109.46952 * 175.80759 * 3 2 1 32 32 H 1.09001 * 109.46654 * 295.80302 * 3 2 1 33 33 H 1.08004 * 119.99956 * 359.97438 * 7 6 4 34 34 H 1.07998 * 120.00156 * 180.22999 * 8 7 6 35 35 H 1.08002 * 119.99817 * 179.72437 * 9 8 7 36 36 H 1.08002 * 120.00272 * 179.97438 * 10 9 8 37 37 H 1.07993 * 120.00341 * 179.97438 * 11 10 9 38 38 H 1.08999 * 111.00369 * 277.42816 * 12 4 2 39 39 H 1.08997 * 111.04158 * 153.59075 * 12 4 2 40 40 H 1.08998 * 110.37124 * 204.15440 * 13 12 4 41 41 H 1.08999 * 110.45904 * 81.87622 * 13 12 4 42 42 H 1.08996 * 109.47401 * 300.00228 * 17 15 14 43 43 H 1.09000 * 109.47142 * 60.00715 * 17 15 14 44 44 H 0.96998 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0550 -0.7513 -1.2415 5 1 1.3052 -1.4483 -1.6161 6 6 2.4671 0.2198 -2.3177 7 6 1.6641 0.4029 -3.4278 8 6 2.0398 1.2973 -4.4127 9 6 3.2236 2.0007 -4.2923 10 6 4.0292 1.8137 -3.1846 11 6 3.6512 0.9229 -2.1975 12 6 3.2877 -1.5152 -0.6900 13 6 2.8145 -1.8783 0.7397 14 7 2.0299 -0.7123 1.1850 15 6 1.8072 -0.3584 2.4663 16 8 1.1427 0.6246 2.7171 17 6 2.3840 -1.1842 3.5872 18 16 1.9116 -0.4578 5.1764 19 6 2.6968 -1.5893 6.2754 20 1 3.2592 -2.4228 5.8813 21 6 2.5935 -1.4087 7.6477 22 7 1.9085 -0.3925 8.1282 23 14 3.4266 -2.6078 8.8129 24 1 4.1277 -3.6551 8.0274 25 1 4.4092 -1.8787 9.6544 26 1 2.4047 -3.2433 9.6831 27 1 -0.3635 0.5206 0.8859 28 1 -0.3633 -1.0276 0.0079 29 1 -0.3633 0.5069 -0.8940 30 1 1.6305 1.9769 0.8500 31 1 3.1375 1.4322 0.0751 32 1 1.7528 1.9326 -0.9252 33 1 0.7415 -0.1503 -3.5242 34 1 1.4105 1.4431 -5.2783 35 1 3.5193 2.6962 -5.0639 36 1 4.9544 2.3630 -3.0908 37 1 4.2808 0.7764 -1.3324 38 1 4.1654 -0.8698 -0.6588 39 1 3.4860 -2.4129 -1.2756 40 1 3.6715 -2.0317 1.3955 41 1 2.1891 -2.7708 0.7189 42 1 1.9986 -2.2018 3.5244 43 1 3.4706 -1.2013 3.5039 44 1 1.8361 -0.2666 9.0872 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421723541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:13 Heat of formation + Delta-G solvation = -28.027948 kcal Electronic energy + Delta-G solvation = -24547.005308 eV Core-core repulsion = 21168.478503 eV Total energy + Delta-G solvation = -3378.526805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92409 -40.07464 -38.36462 -34.59869 -34.43907 -33.22677 -31.82218 -31.32599 -29.71380 -28.27000 -27.66744 -26.57237 -23.96465 -23.32939 -22.94214 -21.08807 -19.95328 -19.17101 -17.77326 -17.70124 -17.19946 -16.89379 -16.56019 -16.16458 -15.86318 -15.77781 -15.30473 -14.89482 -14.55893 -14.53698 -14.33023 -14.18248 -14.01804 -13.77124 -13.46732 -13.33682 -13.16724 -12.94043 -12.89356 -12.81018 -12.60897 -12.53434 -12.30044 -12.00948 -11.79265 -11.71617 -11.59660 -11.44498 -11.16738 -10.75238 -10.28009 -9.71986 -9.66929 -9.48383 -8.68285 -8.35716 -6.14012 0.48482 0.58091 1.24197 1.40731 1.44662 1.56502 1.62262 2.09470 2.26504 2.89181 2.98394 3.24995 3.51368 3.56212 3.66272 3.95819 4.08012 4.09434 4.16773 4.20362 4.23624 4.29959 4.35481 4.40576 4.44057 4.54513 4.64649 4.68133 4.71922 4.77603 4.81800 4.91566 4.94312 5.05287 5.15835 5.20814 5.23926 5.25483 5.33054 5.40769 5.57923 5.65597 5.71053 5.78371 6.18405 6.18978 6.47702 7.05456 7.19644 8.73827 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.002708 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.080565 B =10339.109589 C =10511.031875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.169 3.831 3 C -0.146 4.146 4 C -0.043 4.043 5 H 0.111 0.889 6 C -0.073 4.073 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.119 4.119 13 C 0.088 3.912 14 N -0.610 5.610 15 C 0.547 3.453 16 O -0.557 6.557 17 C -0.120 4.120 18 S -0.150 6.150 19 C -0.544 4.544 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.273 1.273 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -2.989 -28.600 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.085 3.915 3 C -0.204 4.204 4 C -0.062 4.062 5 H 0.129 0.871 6 C -0.073 4.073 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.138 4.138 12 C -0.156 4.156 13 C -0.034 4.034 14 N -0.345 5.345 15 C 0.335 3.665 16 O -0.435 6.435 17 C -0.271 4.271 18 S 0.077 5.923 19 C -0.692 4.692 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.065 -1.435 -28.012 28.216 hybrid contribution 0.936 -1.222 1.026 1.850 sum 4.001 -2.657 -26.986 27.410 Atomic orbital electron populations 1.22107 0.94432 1.02342 1.02180 1.21014 0.93998 0.92291 0.84233 1.22212 1.00929 0.95782 1.01460 1.21227 0.98703 0.95479 0.90780 0.87094 1.19531 0.95083 0.97658 0.95026 1.21270 0.99902 0.99101 0.93674 1.21410 0.97083 0.96414 0.99523 1.21431 0.95032 1.00026 0.98351 1.21369 1.00549 0.98645 0.94404 1.21238 0.96796 0.96876 0.98922 1.22980 0.97003 1.01925 0.93702 1.22660 0.95751 0.88232 0.96745 1.48598 1.53050 1.29267 1.03548 1.19692 0.79693 0.84399 0.82708 1.90665 1.40663 1.28660 1.83554 1.23321 1.04478 1.02864 0.96458 1.85579 1.70715 1.40197 0.95798 1.23213 1.38076 1.14230 0.93655 0.90010 1.26150 0.95786 0.97947 0.99351 1.70194 1.40162 1.30315 1.14158 0.84891 0.77893 0.77695 0.77369 1.17974 1.19886 1.19882 0.94559 0.91711 0.89980 0.94885 0.92273 0.90650 0.84631 0.84332 0.84625 0.85120 0.86050 0.90063 0.86715 0.89861 0.89539 0.87828 0.87871 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 8.41 71.98 0.61 -3.24 16 2 C 0.17 4.06 0.77 3.95 0.00 4.06 16 3 C -0.15 -3.93 6.98 71.98 0.50 -3.43 16 4 C -0.04 -0.68 2.65 -10.35 -0.03 -0.71 16 5 H 0.11 1.42 7.76 -2.38 -0.02 1.40 16 6 C -0.07 -1.14 3.61 -19.87 -0.07 -1.22 16 7 C -0.12 -1.69 9.69 22.27 0.22 -1.48 16 8 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 9 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 10 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 11 C -0.12 -1.99 6.81 22.27 0.15 -1.83 16 12 C -0.12 -1.63 6.38 31.99 0.20 -1.43 16 13 C 0.09 1.67 6.69 86.85 0.58 2.25 16 14 N -0.61 -17.21 2.82 -765.26 -2.16 -19.37 16 15 C 0.55 21.51 7.44 87.66 0.65 22.17 16 16 O -0.56 -26.76 13.52 -3.03 -0.04 -26.80 16 17 C -0.12 -4.99 5.16 71.24 0.37 -4.63 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 19 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.63 13.22 21.65 0.29 -56.35 16 23 Si 1.00 43.95 29.55 68.60 2.03 45.97 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H 0.04 1.20 6.88 -2.39 -0.02 1.19 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 31 H 0.06 1.53 6.32 -2.39 -0.02 1.52 16 32 H 0.07 1.80 6.58 -2.39 -0.02 1.79 16 33 H 0.14 1.42 8.05 -2.91 -0.02 1.40 16 34 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.12 2.01 5.33 -2.91 -0.02 2.00 16 38 H 0.08 1.16 5.91 -2.39 -0.01 1.15 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.55 7.48 -2.39 -0.02 1.54 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.10 3.92 7.85 -2.39 -0.02 3.90 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -77.10 360.77 4.91 -72.19 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.99 Total: 17.89 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.97 Total: -23.84 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.87 Total: -75.72 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.04 Total: -26.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -77.10 4.91 -72.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421723541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.160 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds