Wall clock time and date at job start Tue Mar 31 2020 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47102 * 2 1 4 4 C 1.53044 * 109.46241 * 184.99978 * 3 2 1 5 5 C 1.53188 * 109.31533 * 178.61614 * 4 3 2 6 6 N 1.46928 * 108.89093 * 54.56365 * 5 4 3 7 7 C 1.34777 * 120.63041 * 126.46500 * 6 5 4 8 8 O 1.21548 * 119.99722 * 354.23230 * 7 6 5 9 9 C 1.47859 * 120.00056 * 174.23806 * 7 6 5 10 10 C 1.39675 * 120.10356 * 325.14984 * 9 7 6 11 11 C 1.38036 * 120.04078 * 179.79369 * 10 9 7 12 12 C 1.38178 * 120.24425 * 0.45739 * 11 10 9 13 13 C 1.39184 * 120.20348 * 359.79641 * 12 11 10 14 14 S 1.76191 * 120.02312 * 179.97438 * 13 12 11 15 15 C 1.76197 * 100.00348 * 274.51496 * 14 13 12 16 16 H 1.08002 * 120.00093 * 354.88408 * 15 14 13 17 17 C 1.38725 * 120.00244 * 174.87986 * 15 14 13 18 18 N 1.31624 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46912 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47203 * 119.99986 * 19 17 15 22 22 H 1.48506 * 109.46826 * 240.00097 * 19 17 15 23 23 C 1.38880 * 119.95536 * 359.97438 * 13 12 11 24 24 C 1.46963 * 118.71733 * 306.64205 * 6 5 4 25 25 C 1.53038 * 109.45799 * 64.93288 * 3 2 1 26 26 H 1.08991 * 109.46997 * 299.99599 * 1 2 3 27 27 H 1.08998 * 109.46904 * 59.99889 * 1 2 3 28 28 H 1.09003 * 109.46590 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47377 * 240.00340 * 2 1 3 30 30 H 1.09000 * 109.47632 * 120.00212 * 2 1 3 31 31 H 1.08994 * 109.45900 * 304.97524 * 3 2 1 32 32 H 1.09001 * 109.49749 * 58.66055 * 4 3 2 33 33 H 1.09005 * 109.49631 * 298.56985 * 4 3 2 34 34 H 1.08995 * 109.58978 * 174.42113 * 5 4 3 35 35 H 1.08995 * 109.58551 * 294.71053 * 5 4 3 36 36 H 1.08003 * 119.97299 * 359.97438 * 10 9 7 37 37 H 1.07996 * 119.87734 * 180.21457 * 11 10 9 38 38 H 1.07997 * 119.90255 * 179.76577 * 12 11 10 39 39 H 0.97007 * 120.00039 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.11782 * 179.97438 * 23 13 12 41 41 H 1.08997 * 109.46523 * 293.57292 * 24 6 5 42 42 H 1.08998 * 109.71082 * 173.28752 * 24 6 5 43 43 H 1.09001 * 109.49979 * 301.34135 * 25 3 2 44 44 H 1.09008 * 109.49650 * 61.43355 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 -0.1258 5 6 4.0693 2.8903 -0.1602 6 7 3.5607 3.5996 1.0217 7 6 4.4036 4.2518 1.8467 8 8 5.6044 4.1703 1.6769 9 6 3.8676 5.0661 2.9584 10 6 2.6688 5.7651 2.8001 11 6 2.1674 6.5215 3.8403 12 6 2.8523 6.5987 5.0379 13 6 4.0506 5.9106 5.2049 14 16 4.9203 6.0130 6.7337 15 6 5.8455 7.4875 6.4614 16 1 5.8107 7.9770 5.4993 17 6 6.6186 8.0199 7.4828 18 7 6.6615 7.4233 8.6553 19 14 7.5990 9.5837 7.1943 20 1 7.3825 10.0539 5.8024 21 1 7.1513 10.6314 8.1465 22 1 9.0431 9.3083 7.4042 23 6 4.5602 5.1433 4.1656 24 6 2.1157 3.5809 1.2889 25 6 1.6335 2.1270 1.3071 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6056 1.9812 -0.8421 32 1 3.8550 0.9358 -1.0454 33 1 4.0013 0.9271 0.7291 34 1 5.1592 2.8978 -0.1499 35 1 3.7090 3.3814 -1.0641 36 1 2.1323 5.7112 1.8643 37 1 1.2384 7.0581 3.7162 38 1 2.4569 7.1952 5.8467 39 1 7.2024 7.7954 9.3694 40 1 5.4900 4.6086 4.2921 41 1 1.5941 4.1291 0.5044 42 1 1.9143 4.0448 2.2545 43 1 0.5483 2.1047 1.4073 44 1 2.0878 1.6035 2.1484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430699441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:40 Heat of formation + Delta-G solvation = -23.502879 kcal Electronic energy + Delta-G solvation = -24045.862170 eV Core-core repulsion = 20667.531587 eV Total energy + Delta-G solvation = -3378.330583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56531 -38.48508 -37.54191 -34.87364 -32.50137 -32.16932 -30.72412 -30.55917 -30.17121 -26.02675 -25.56765 -23.79230 -23.52912 -22.20341 -21.75784 -20.59830 -19.43481 -18.00271 -17.07703 -16.46171 -15.89433 -15.47735 -15.06508 -14.84625 -14.81623 -14.73087 -14.29132 -14.20978 -13.86628 -13.64646 -13.33668 -13.02793 -12.91165 -12.67124 -12.46982 -12.10813 -12.09169 -11.59349 -11.46921 -11.42476 -11.18415 -11.12093 -11.08713 -10.94128 -10.70793 -10.58811 -10.53765 -9.91018 -9.74832 -9.16147 -8.95301 -8.77519 -8.53534 -7.99857 -6.71309 -6.28292 -4.02073 1.24315 1.65039 2.83800 3.01095 3.20273 3.22495 3.29685 3.48139 4.02666 4.23604 4.38072 4.40654 4.42651 4.67747 4.85245 4.89021 5.03118 5.07203 5.08088 5.13732 5.19485 5.24546 5.27793 5.28283 5.46872 5.48154 5.56486 5.58688 5.65909 5.70941 5.72343 5.77570 5.81943 5.83705 5.86517 5.96581 6.02842 6.15616 6.25963 6.44845 6.59263 6.64784 6.93225 7.18866 7.36874 7.58976 8.24171 8.34182 9.17969 10.78520 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002787 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.487672 B =10045.437889 C =10385.192468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.129 4.129 5 C 0.112 3.888 6 N -0.611 5.611 7 C 0.567 3.433 8 O -0.534 6.534 9 C -0.150 4.150 10 C -0.097 4.097 11 C -0.141 4.141 12 C -0.057 4.057 13 C -0.104 4.104 14 S -0.037 6.037 15 C -0.518 4.518 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.871 5.871 19 Si 0.921 3.079 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.024 4.024 24 C 0.092 3.908 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -11.050 -17.615 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.106 4.106 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.345 5.345 7 C 0.356 3.644 8 O -0.411 6.411 9 C -0.154 4.154 10 C -0.116 4.116 11 C -0.160 4.160 12 C -0.078 4.078 13 C -0.214 4.214 14 S 0.198 5.802 15 C -0.665 4.665 16 H 0.095 0.905 17 C -0.136 4.136 18 N -0.507 5.507 19 Si 0.747 3.253 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.046 4.046 24 C -0.030 4.030 25 C -0.171 4.171 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.425 -11.777 -16.551 24.349 hybrid contribution 0.496 1.753 -1.279 2.226 sum -12.929 -10.023 -17.829 24.197 Atomic orbital electron populations 1.21822 0.95858 1.01533 1.01928 1.21566 0.95913 0.96187 1.02032 1.21189 0.95314 0.96140 0.98004 1.21977 0.95565 0.96540 1.02681 1.21553 1.01023 0.91522 0.86959 1.47955 1.07451 1.52730 1.26377 1.18515 0.85829 0.78692 0.81328 1.90767 1.14894 1.63195 1.72286 1.19796 0.97537 1.02901 0.95199 1.21345 0.94429 0.96829 0.99022 1.21081 1.00678 1.00477 0.93798 1.21981 0.93434 0.95579 0.96826 1.22815 0.98088 0.98558 1.01968 1.83583 1.50794 1.35852 1.09990 1.22880 1.31631 1.10592 1.01403 0.90539 1.25002 0.96314 0.97983 0.94319 1.69998 1.38781 1.39210 1.02671 0.86066 0.79353 0.81333 0.78564 1.19465 1.20483 1.20436 1.21824 0.97506 0.95210 0.90061 1.22273 0.80203 0.97340 1.03203 1.22062 1.01332 0.95555 0.98106 0.92352 0.92838 0.92924 0.92054 0.91931 0.91077 0.90832 0.91336 0.88903 0.91731 0.85660 0.85848 0.85113 0.92131 0.84779 0.91513 0.87724 0.90413 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.77 5.40 -26.73 -0.14 -0.91 16 3 C -0.09 -0.63 2.15 -90.58 -0.19 -0.82 16 4 C -0.13 -1.08 5.36 -26.61 -0.14 -1.22 16 5 C 0.11 1.17 6.44 -3.71 -0.02 1.15 16 6 N -0.61 -7.55 2.98 -173.85 -0.52 -8.07 16 7 C 0.57 9.44 7.39 -12.32 -0.09 9.35 16 8 O -0.53 -10.86 16.23 5.32 0.09 -10.77 16 9 C -0.15 -2.55 5.31 -105.00 -0.56 -3.11 16 10 C -0.10 -1.37 7.36 -39.12 -0.29 -1.65 16 11 C -0.14 -2.03 10.02 -39.68 -0.40 -2.43 16 12 C -0.06 -1.04 9.79 -39.25 -0.38 -1.42 16 13 C -0.10 -2.22 5.45 -38.99 -0.21 -2.43 16 14 S -0.04 -0.95 21.40 -107.50 -2.30 -3.25 16 15 C -0.52 -14.73 9.46 30.91 0.29 -14.43 16 16 H 0.08 2.18 7.79 -52.49 -0.41 1.77 16 17 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 18 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 19 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C -0.02 -0.49 9.36 -38.92 -0.36 -0.86 16 24 C 0.09 0.86 4.76 -3.69 -0.02 0.84 16 25 C -0.13 -1.05 5.15 -26.61 -0.14 -1.19 16 26 H 0.06 0.34 6.53 -51.93 -0.34 0.00 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.13 1.35 5.99 -52.48 -0.31 1.04 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.13 2.88 7.99 -52.49 -0.42 2.46 16 41 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 42 H 0.10 1.06 4.45 -51.93 -0.23 0.83 16 43 H 0.08 0.50 6.50 -51.93 -0.34 0.17 16 44 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -32.49 365.26 -10.53 -43.02 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.62 Total: -0.52 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.40 Total: -17.72 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.22 Total: -32.88 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -10.53 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430699441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.518 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds