Wall clock time and date at job start Tue Mar 31 2020 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47102 * 2 1 4 4 C 1.53044 * 109.46241 * 184.99978 * 3 2 1 5 5 C 1.53188 * 109.31533 * 178.61614 * 4 3 2 6 6 N 1.46928 * 108.89093 * 54.56365 * 5 4 3 7 7 C 1.34777 * 120.63041 * 126.46500 * 6 5 4 8 8 O 1.21548 * 119.99722 * 354.23230 * 7 6 5 9 9 C 1.47859 * 120.00056 * 174.23806 * 7 6 5 10 10 C 1.39675 * 120.10356 * 325.14984 * 9 7 6 11 11 C 1.38036 * 120.04078 * 179.79369 * 10 9 7 12 12 C 1.38178 * 120.24425 * 0.45739 * 11 10 9 13 13 C 1.39184 * 120.20348 * 359.79641 * 12 11 10 14 14 S 1.76191 * 120.02312 * 179.97438 * 13 12 11 15 15 C 1.76197 * 100.00348 * 274.51496 * 14 13 12 16 16 H 1.08002 * 120.00093 * 354.88408 * 15 14 13 17 17 C 1.38725 * 120.00244 * 174.87986 * 15 14 13 18 18 N 1.31624 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46912 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47203 * 119.99986 * 19 17 15 22 22 H 1.48506 * 109.46826 * 240.00097 * 19 17 15 23 23 C 1.38880 * 119.95536 * 359.97438 * 13 12 11 24 24 C 1.46963 * 118.71733 * 306.64205 * 6 5 4 25 25 C 1.53038 * 109.45799 * 64.93288 * 3 2 1 26 26 H 1.08991 * 109.46997 * 299.99599 * 1 2 3 27 27 H 1.08998 * 109.46904 * 59.99889 * 1 2 3 28 28 H 1.09003 * 109.46590 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47377 * 240.00340 * 2 1 3 30 30 H 1.09000 * 109.47632 * 120.00212 * 2 1 3 31 31 H 1.08994 * 109.45900 * 304.97524 * 3 2 1 32 32 H 1.09001 * 109.49749 * 58.66055 * 4 3 2 33 33 H 1.09005 * 109.49631 * 298.56985 * 4 3 2 34 34 H 1.08995 * 109.58978 * 174.42113 * 5 4 3 35 35 H 1.08995 * 109.58551 * 294.71053 * 5 4 3 36 36 H 1.08003 * 119.97299 * 359.97438 * 10 9 7 37 37 H 1.07996 * 119.87734 * 180.21457 * 11 10 9 38 38 H 1.07997 * 119.90255 * 179.76577 * 12 11 10 39 39 H 0.97007 * 120.00039 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.11782 * 179.97438 * 23 13 12 41 41 H 1.08997 * 109.46523 * 293.57292 * 24 6 5 42 42 H 1.08998 * 109.71082 * 173.28752 * 24 6 5 43 43 H 1.09001 * 109.49979 * 301.34135 * 25 3 2 44 44 H 1.09008 * 109.49650 * 61.43355 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 -0.1258 5 6 4.0693 2.8903 -0.1602 6 7 3.5607 3.5996 1.0217 7 6 4.4036 4.2518 1.8467 8 8 5.6044 4.1703 1.6769 9 6 3.8676 5.0661 2.9584 10 6 2.6688 5.7651 2.8001 11 6 2.1674 6.5215 3.8403 12 6 2.8523 6.5987 5.0379 13 6 4.0506 5.9106 5.2049 14 16 4.9203 6.0130 6.7337 15 6 5.8455 7.4875 6.4614 16 1 5.8107 7.9770 5.4993 17 6 6.6186 8.0199 7.4828 18 7 6.6615 7.4233 8.6553 19 14 7.5990 9.5837 7.1943 20 1 7.3825 10.0539 5.8024 21 1 7.1513 10.6314 8.1465 22 1 9.0431 9.3083 7.4042 23 6 4.5602 5.1433 4.1656 24 6 2.1157 3.5809 1.2889 25 6 1.6335 2.1270 1.3071 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6056 1.9812 -0.8421 32 1 3.8550 0.9358 -1.0454 33 1 4.0013 0.9271 0.7291 34 1 5.1592 2.8978 -0.1499 35 1 3.7090 3.3814 -1.0641 36 1 2.1323 5.7112 1.8643 37 1 1.2384 7.0581 3.7162 38 1 2.4569 7.1952 5.8467 39 1 7.2024 7.7954 9.3694 40 1 5.4900 4.6086 4.2921 41 1 1.5941 4.1291 0.5044 42 1 1.9143 4.0448 2.2545 43 1 0.5483 2.1047 1.4073 44 1 2.0878 1.6035 2.1484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430699441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:40 Heat of formation + Delta-G solvation = -41.623218 kcal Electronic energy + Delta-G solvation = -24046.647927 eV Core-core repulsion = 20667.531587 eV Total energy + Delta-G solvation = -3379.116340 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69585 -39.57395 -38.72659 -35.74539 -34.66599 -33.15481 -32.02962 -31.45189 -31.17382 -27.76179 -26.87726 -24.66027 -24.58647 -23.50295 -22.62166 -21.39446 -20.49596 -19.80798 -18.48978 -17.71791 -17.09837 -16.94611 -16.55495 -16.30999 -15.77354 -15.65229 -15.24882 -15.08212 -14.92561 -14.77305 -14.55847 -14.53708 -13.86856 -13.83984 -13.38782 -13.29703 -13.15298 -12.99151 -12.72055 -12.70912 -12.62689 -12.41587 -12.19772 -11.99225 -11.73737 -11.52730 -11.31908 -11.24692 -11.18446 -11.08911 -10.62458 -10.02983 -9.70023 -9.61655 -8.82300 -8.40596 -6.20611 -0.13004 0.22430 1.28531 1.35109 1.44444 1.56161 1.75927 1.91529 2.22559 2.69611 2.92166 3.38275 3.41235 3.76243 3.79509 3.87609 3.93172 4.00970 4.12439 4.29790 4.32360 4.38139 4.45663 4.48533 4.55793 4.64677 4.67697 4.69489 4.82570 4.86662 4.89305 4.96343 5.05324 5.12304 5.16478 5.20992 5.26657 5.27733 5.29887 5.37587 5.47175 5.49330 5.58221 5.59188 5.85027 6.14930 6.26415 6.99938 7.01943 8.66701 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002787 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.487672 B =10045.437889 C =10385.192468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.124 4.124 5 C 0.107 3.893 6 N -0.599 5.599 7 C 0.559 3.441 8 O -0.587 6.587 9 C -0.151 4.151 10 C -0.070 4.070 11 C -0.118 4.118 12 C -0.066 4.066 13 C -0.125 4.125 14 S -0.095 6.095 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.992 3.008 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.272 1.272 23 C -0.049 4.049 24 C 0.084 3.916 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.132 0.868 39 H 0.274 0.726 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 -10.111 -20.819 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.101 4.101 4 C -0.162 4.162 5 C -0.015 4.015 6 N -0.330 5.330 7 C 0.349 3.651 8 O -0.468 6.468 9 C -0.156 4.156 10 C -0.088 4.088 11 C -0.137 4.137 12 C -0.086 4.086 13 C -0.236 4.236 14 S 0.140 5.860 15 C -0.682 4.682 16 H 0.083 0.917 17 C -0.185 4.185 18 N -0.542 5.542 19 Si 0.814 3.186 20 H -0.192 1.192 21 H -0.188 1.188 22 H -0.197 1.197 23 C -0.070 4.070 24 C -0.037 4.037 25 C -0.168 4.168 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.784 -10.871 -19.772 28.122 hybrid contribution 1.396 1.313 -0.439 1.967 sum -15.388 -9.558 -20.211 27.140 Atomic orbital electron populations 1.21811 0.94994 1.01819 1.02363 1.21538 0.96601 0.95637 1.01767 1.21174 0.93978 0.96746 0.98156 1.21952 0.96702 0.94884 1.02711 1.21752 0.99760 0.92970 0.87022 1.48071 1.08517 1.50856 1.25601 1.18552 0.85584 0.79192 0.81758 1.90741 1.17118 1.65237 1.73702 1.19898 0.98468 1.03375 0.93876 1.21859 0.92482 0.93858 1.00637 1.21550 1.01481 0.99182 0.91518 1.22062 0.92540 0.95231 0.98814 1.22448 0.99591 1.01692 0.99872 1.83454 1.52262 1.35832 1.14502 1.23068 1.32796 1.11158 1.01189 0.91708 1.25993 0.97143 1.01464 0.93903 1.70111 1.39635 1.40904 1.03555 0.84998 0.77765 0.77142 0.78674 1.19235 1.18839 1.19712 1.21527 0.97408 0.96260 0.91852 1.22593 0.78125 0.98857 1.04133 1.22057 1.02554 0.94387 0.97772 0.92290 0.91925 0.92863 0.91450 0.93204 0.89150 0.88903 0.93632 0.91617 0.88831 0.80845 0.80620 0.85042 0.91658 0.88091 0.87768 0.88315 0.88029 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 71.98 0.70 -0.57 16 2 C -0.12 -1.21 5.40 30.59 0.17 -1.04 16 3 C -0.08 -0.90 2.15 -10.77 -0.02 -0.92 16 4 C -0.12 -1.85 5.36 30.67 0.16 -1.68 16 5 C 0.11 2.05 6.44 86.36 0.56 2.60 16 6 N -0.60 -13.64 2.98 -822.23 -2.45 -16.09 16 7 C 0.56 18.71 7.39 86.79 0.64 19.36 16 8 O -0.59 -25.13 16.23 -3.87 -0.06 -25.19 16 9 C -0.15 -5.10 5.31 -20.11 -0.11 -5.21 16 10 C -0.07 -1.70 7.36 22.57 0.17 -1.53 16 11 C -0.12 -2.93 10.02 22.21 0.22 -2.70 16 12 C -0.07 -2.34 9.79 22.48 0.22 -2.12 16 13 C -0.12 -5.59 5.45 22.65 0.12 -5.47 16 14 S -0.10 -5.27 21.40 -56.49 -1.21 -6.48 16 15 C -0.53 -31.89 9.46 67.94 0.64 -31.25 16 16 H 0.06 3.87 7.79 -2.91 -0.02 3.85 16 17 C 0.02 1.17 5.49 84.84 0.47 1.64 16 18 N -0.91 -54.92 13.22 21.63 0.29 -54.64 16 19 Si 0.99 45.24 29.55 68.60 2.03 47.27 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.05 -2.09 9.36 22.70 0.21 -1.88 16 24 C 0.08 1.21 4.76 86.36 0.41 1.62 16 25 C -0.13 -1.64 5.15 30.67 0.16 -1.48 16 26 H 0.06 0.48 6.53 -2.39 -0.02 0.47 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 1.65 7.00 -2.39 -0.02 1.63 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.17 2.59 5.99 -2.91 -0.02 2.58 16 37 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.27 15.34 8.31 -92.70 -0.77 14.56 16 40 H 0.10 4.86 7.99 -2.91 -0.02 4.84 16 41 H 0.10 0.86 8.04 -2.39 -0.02 0.85 16 42 H 0.10 1.56 4.45 -2.39 -0.01 1.55 16 43 H 0.10 0.86 6.50 -2.39 -0.02 0.84 16 44 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -78.10 365.26 4.29 -73.81 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.99 Total: 11.96 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.72 Total: -30.63 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -2.16 Total: -70.73 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -78.10 4.29 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430699441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.183 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds