Wall clock time and date at job start Tue Mar 31 2020 12:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 C 1.50699 * 109.47698 * 59.99879 * 3 2 1 5 5 C 1.38233 * 119.99705 * 269.72828 * 4 3 2 6 6 C 1.38242 * 119.99408 * 179.76131 * 5 4 3 7 7 C 1.38229 * 120.00351 * 0.51080 * 6 5 4 8 8 C 1.38243 * 119.99665 * 359.74023 * 7 6 5 9 9 C 1.38229 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.46496 * 109.47227 * 239.99700 * 2 1 3 11 11 C 1.34772 * 120.00358 * 183.92921 * 10 2 1 12 12 O 1.21290 * 119.99870 * 5.19258 * 11 10 2 13 13 C 1.50698 * 120.00296 * 185.19441 * 11 10 2 14 14 S 1.81001 * 109.47162 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00092 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00152 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46552 * 60.00711 * 19 17 15 21 21 H 1.48503 * 109.46736 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47409 * 300.00209 * 19 17 15 23 23 C 1.53000 * 109.47005 * 119.99690 * 2 1 3 24 24 C 1.53006 * 117.51837 * 348.87065 * 23 2 1 25 25 C 1.52994 * 59.99897 * 107.48125 * 24 23 2 26 26 H 1.09004 * 109.47297 * 300.00457 * 1 2 3 27 27 H 1.09001 * 109.47027 * 60.00423 * 1 2 3 28 28 H 1.09004 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46995 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46898 * 299.99656 * 3 2 1 31 31 H 1.07998 * 120.00467 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99650 * 180.22915 * 6 5 4 33 33 H 1.07998 * 120.00359 * 179.72622 * 7 6 5 34 34 H 1.08003 * 119.99504 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.99713 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99662 * 3.92343 * 10 2 1 37 37 H 1.09002 * 109.46756 * 299.99546 * 13 11 10 38 38 H 1.08998 * 109.47335 * 59.99839 * 13 11 10 39 39 H 0.97001 * 120.00200 * 179.97438 * 18 17 15 40 40 H 1.08996 * 115.55336 * 203.16909 * 23 2 1 41 41 H 1.09001 * 117.49440 * 214.97338 * 24 23 2 42 42 H 1.08998 * 117.49888 * 359.97438 * 24 23 2 43 43 H 1.09008 * 117.50016 * 252.50585 * 25 24 23 44 44 H 1.09007 * 117.51819 * 107.48336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1530 1.2304 5 6 0.3325 2.8291 1.1944 6 6 -0.1306 3.4767 2.3246 7 6 0.6164 3.4571 3.4874 8 6 1.8241 2.7853 3.5218 9 6 2.2849 2.1336 2.3932 10 7 2.0183 -0.6906 -1.1961 11 6 3.3408 -0.8835 -1.3702 12 8 4.1197 -0.5705 -0.4948 13 6 3.8517 -1.4881 -2.6526 14 16 5.6558 -1.6162 -2.5824 15 6 5.9733 -2.3335 -4.1601 16 1 5.1537 -2.5528 -4.8283 17 6 7.2767 -2.6156 -4.5447 18 7 8.2757 -2.3477 -3.7305 19 14 7.6132 -3.3767 -6.2171 20 1 7.1129 -2.4713 -7.2826 21 1 9.0750 -3.5782 -6.3841 22 1 6.9193 -4.6860 -6.3138 23 6 2.0400 -0.7212 1.2493 24 6 1.0203 -1.0494 2.3418 25 6 1.5879 -2.1669 1.4644 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8900 31 1 -0.2489 2.8486 0.2845 32 1 -1.0739 4.0019 2.2975 33 1 0.2567 3.9668 4.3690 34 1 2.4080 2.7703 4.4303 35 1 3.2286 1.6091 2.4200 36 1 1.3898 -1.0092 -1.8627 37 1 3.4214 -2.4811 -2.7828 38 1 3.5652 -0.8549 -3.4922 39 1 9.1867 -2.5452 -3.9990 40 1 3.0490 -0.4571 1.5656 41 1 1.3586 -1.0012 3.3769 42 1 -0.0141 -0.7512 2.1709 43 1 0.9268 -2.6043 0.7161 44 1 2.2997 -2.8541 1.9219 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457010571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:28 Heat of formation + Delta-G solvation = 9.263270 kcal Electronic energy + Delta-G solvation = -24442.460531 eV Core-core repulsion = 21065.550794 eV Total energy + Delta-G solvation = -3376.909737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54979 -38.95758 -37.43795 -34.50158 -32.76626 -32.41740 -31.01456 -30.21681 -28.45197 -27.00292 -25.47135 -23.73134 -22.56924 -22.20082 -21.38921 -20.68609 -18.85812 -17.83547 -16.77186 -16.37864 -16.28467 -15.66399 -15.19698 -15.07969 -14.79681 -14.72760 -14.23063 -14.03161 -13.46268 -13.22604 -13.21232 -12.89115 -12.58974 -12.51906 -12.36222 -12.33884 -11.98322 -11.61073 -11.26797 -11.13169 -11.04011 -11.03556 -11.01663 -10.76053 -10.75243 -10.29171 -10.05792 -9.80118 -9.13018 -9.08409 -9.03721 -8.96402 -8.52316 -8.22145 -6.47956 -6.20697 -3.90710 1.28609 1.34303 3.03594 3.15347 3.23851 3.27656 3.30745 3.64272 3.73489 4.09530 4.21740 4.51015 4.72230 4.81508 4.86012 4.93303 4.94432 5.05765 5.12506 5.14378 5.17231 5.23930 5.35111 5.38766 5.46793 5.59529 5.62514 5.68023 5.80176 5.82295 5.84776 5.89326 5.92448 5.99877 6.09941 6.16495 6.17981 6.18902 6.38540 6.41977 6.46349 6.64280 6.76270 6.95109 7.60152 7.80939 8.35905 8.70192 9.24609 10.86619 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.002802 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.595144 B = 9990.363158 C =10212.436840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.217 3.783 3 C -0.092 4.092 4 C -0.062 4.062 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.103 4.103 10 N -0.731 5.731 11 C 0.536 3.464 12 O -0.511 6.511 13 C -0.155 4.155 14 S -0.058 6.058 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.140 4.140 24 C -0.180 4.180 25 C -0.173 4.173 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.396 0.604 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.072 8.074 11.514 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 C -0.130 4.130 4 C -0.063 4.063 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.137 4.137 9 C -0.121 4.121 10 N -0.385 5.385 11 C 0.323 3.677 12 O -0.384 6.384 13 C -0.305 4.305 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.159 4.159 24 C -0.218 4.218 25 C -0.210 4.210 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.557 8.603 12.985 24.228 hybrid contribution -0.951 -1.055 -2.434 2.818 sum -19.508 7.548 10.551 23.428 Atomic orbital electron populations 1.22291 0.93945 1.02567 1.03120 1.19535 0.92844 0.90307 0.84198 1.21019 1.03280 0.93656 0.95084 1.19726 0.94416 0.96963 0.95191 1.21045 0.96045 0.98317 0.98372 1.21069 0.99786 0.99988 0.93315 1.21082 0.95385 1.00208 0.98000 1.21138 0.96361 0.97910 0.98341 1.21140 0.99948 0.98584 0.92459 1.46190 1.07529 1.61259 1.23543 1.20205 0.81570 0.77550 0.88418 1.90652 1.55465 1.49264 1.43067 1.23549 1.06741 1.03019 0.97216 1.85349 0.92100 1.81837 1.23884 1.22833 0.95374 1.47767 1.02452 0.91062 1.24983 0.95080 0.95368 0.98125 1.70007 0.99466 1.45070 1.35785 0.86240 0.77362 0.79526 0.82470 1.19954 1.20818 1.19962 1.22565 0.99801 0.97521 0.95989 1.23082 0.98862 1.03803 0.96011 1.22829 1.03585 0.91812 1.02796 0.90082 0.92015 0.91926 0.88854 0.90955 0.86391 0.86511 0.86590 0.86363 0.85908 0.76954 0.89490 0.89411 0.92156 0.86534 0.89324 0.88734 0.89304 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 6.63 37.16 0.25 -1.16 16 2 C 0.22 2.51 0.65 -131.82 -0.09 2.42 16 3 C -0.09 -1.13 4.44 -27.89 -0.12 -1.25 16 4 C -0.06 -0.69 4.19 -104.63 -0.44 -1.13 16 5 C -0.12 -1.14 7.90 -39.58 -0.31 -1.45 16 6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 7 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 8 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.10 -1.16 8.69 -39.59 -0.34 -1.51 16 10 N -0.73 -9.46 5.02 -47.61 -0.24 -9.70 16 11 C 0.54 9.56 7.26 -10.99 -0.08 9.48 16 12 O -0.51 -10.76 12.69 5.55 0.07 -10.69 16 13 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 14 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 16 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 19 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.14 -1.77 2.58 -90.62 -0.23 -2.01 16 24 C -0.18 -1.90 9.61 -26.73 -0.26 -2.16 16 25 C -0.17 -2.08 9.80 -26.74 -0.26 -2.34 16 26 H 0.08 0.69 4.90 -51.93 -0.25 0.44 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 7.02 -51.93 -0.36 0.15 16 29 H 0.09 1.44 6.59 -51.93 -0.34 1.10 16 30 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.12 1.47 7.51 -52.49 -0.39 1.07 16 36 H 0.40 4.08 8.48 -40.82 -0.35 3.74 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.12 1.81 6.61 -51.93 -0.34 1.47 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.89 5.87 -51.93 -0.30 0.59 16 43 H 0.09 1.00 7.45 -51.92 -0.39 0.62 16 44 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -32.86 366.98 -10.31 -43.17 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.50 Total: 6.01 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.66 Total: -21.51 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.49 Total: -35.13 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.86 -10.31 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457010571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.430 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds