Wall clock time and date at job start Tue Mar 31 2020 13:11:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52996 * 109.47630 * 2 1
4 4 C 1.53006 * 109.47125 * 239.99675 * 2 1 3
5 5 C 1.53000 * 109.47255 * 120.00080 * 2 1 3
6 6 C 1.53496 * 114.20770 * 60.93315 * 5 2 1
7 7 N 1.47064 * 87.98948 * 220.34663 * 6 5 2
8 8 C 1.34772 * 136.06146 * 207.08376 * 7 6 5
9 9 O 1.21557 * 120.00170 * 0.51224 * 8 7 6
10 10 C 1.47859 * 120.00142 * 180.51311 * 8 7 6
11 11 C 1.39676 * 120.10389 * 7.43850 * 10 8 7
12 12 C 1.38038 * 120.04003 * 180.02562 * 11 10 8
13 13 C 1.38181 * 120.24508 * 359.97438 * 12 11 10
14 14 C 1.39178 * 120.20161 * 0.02562 * 13 12 11
15 15 S 1.76196 * 120.02119 * 180.02562 * 14 13 12
16 16 C 1.76200 * 100.00091 * 274.83677 * 15 14 13
17 17 H 1.07996 * 119.99586 * 5.01587 * 16 15 14
18 18 C 1.38729 * 119.99986 * 185.01353 * 16 15 14
19 19 N 1.31626 * 119.99855 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99955 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47234 * 60.00204 * 20 18 16
22 22 H 1.48501 * 109.47072 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47213 * 300.00099 * 20 18 16
24 24 C 1.38877 * 119.96072 * 359.76386 * 14 13 12
25 25 C 1.47070 * 87.88096 * 27.12181 * 7 6 5
26 26 H 1.09004 * 109.47278 * 308.28332 * 1 2 3
27 27 H 1.09002 * 109.47388 * 68.28182 * 1 2 3
28 28 H 1.09000 * 109.47425 * 188.28287 * 1 2 3
29 29 H 1.08995 * 109.47737 * 180.02562 * 3 2 1
30 30 H 1.09004 * 109.46779 * 300.00315 * 3 2 1
31 31 H 1.09000 * 109.47051 * 59.99420 * 3 2 1
32 32 H 1.09002 * 109.46810 * 300.00172 * 4 2 1
33 33 H 1.09000 * 109.46927 * 60.00472 * 4 2 1
34 34 H 1.08994 * 109.47102 * 180.02562 * 4 2 1
35 35 H 1.08996 * 113.41882 * 194.14120 * 5 2 1
36 36 H 1.09008 * 113.46327 * 105.56699 * 6 5 2
37 37 H 1.08999 * 113.46968 * 335.13649 * 6 5 2
38 38 H 1.07999 * 119.97264 * 0.02562 * 11 10 8
39 39 H 1.08001 * 119.87467 * 180.02562 * 12 11 10
40 40 H 1.07996 * 119.89824 * 180.02562 * 13 12 11
41 41 H 0.97006 * 119.99767 * 179.97438 * 19 18 16
42 42 H 1.08002 * 120.12273 * 180.27979 * 24 14 13
43 43 H 1.09003 * 113.46601 * 87.65786 * 25 7 6
44 44 H 1.09000 * 113.46527 * 218.03291 * 25 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 2.0400 -0.7213 1.2492
6 6 1.6085 -2.1910 1.3476
7 7 1.3899 -1.9767 2.7860
8 6 1.4101 -2.7418 3.8953
9 8 1.6702 -3.9263 3.8121
10 6 1.1157 -2.1404 5.2137
11 6 0.6659 -0.8207 5.2970
12 6 0.3920 -0.2604 6.5285
13 6 0.5605 -1.0008 7.6830
14 6 1.0082 -2.3167 7.6117
15 16 1.2207 -3.2567 9.0868
16 6 2.8487 -2.7552 9.5373
17 1 3.3541 -1.9884 8.9691
18 6 3.4811 -3.3453 10.6219
19 7 2.8651 -4.2802 11.3141
20 14 5.2066 -2.8131 11.0999
21 1 5.2045 -1.3654 11.4301
22 1 5.6544 -3.5906 12.2833
23 1 6.1331 -3.0609 9.9661
24 6 1.2821 -2.8902 6.3769
25 6 1.1385 -0.5601 2.4811
26 1 -0.3634 0.6367 0.8067
27 1 -0.3634 0.3803 -0.9547
28 1 -0.3634 -1.0169 0.1480
29 1 3.1300 1.4424 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9563 0.8899
32 1 1.6766 -1.7490 -1.2492
33 1 1.6767 -0.2075 -2.1392
34 1 3.1299 -0.7217 -1.2490
35 1 3.0988 -0.5522 1.4451
36 1 2.4123 -2.8948 1.1309
37 1 0.6939 -2.4127 0.7977
38 1 0.5324 -0.2384 4.3973
39 1 0.0440 0.7601 6.5898
40 1 0.3442 -0.5571 8.6435
41 1 3.3075 -4.6932 12.0723
42 1 1.6253 -3.9126 6.3183
43 1 0.0986 -0.3473 2.2332
44 1 1.5416 0.1230 3.2288
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000457345934.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:49
Heat of formation + Delta-G solvation = 21.954316 kcal
Electronic energy + Delta-G solvation = -23890.250834 eV
Core-core repulsion = 20513.891422 eV
Total energy + Delta-G solvation = -3376.359412 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.15715 -39.03280 -37.54297 -35.82207 -32.49883 -31.30403 -30.55939 -28.93208
-28.03588 -27.73531 -25.97536 -25.54399 -24.04589 -22.29133 -22.00842 -19.62825
-18.76382 -18.01846 -17.09048 -16.65026 -16.32422 -15.52290 -14.96017 -14.84331
-14.79962 -14.54493 -14.24253 -14.13772 -13.61900 -13.48339 -13.26077 -13.03702
-12.88062 -12.55026 -12.43385 -12.28963 -12.17929 -11.97967 -11.74659 -11.33070
-11.19166 -11.14844 -11.07783 -11.05555 -10.92839 -10.72327 -10.44119 -9.97480
-9.67118 -9.17535 -8.98372 -8.82084 -8.52619 -8.00718 -6.69993 -6.27525
-4.01611 1.19235 1.68171 2.70936 3.05264 3.20468 3.23522 3.26731
3.46535 3.87737 4.08714 4.24337 4.34169 4.34657 4.52442 4.66108
4.79512 4.91371 5.07147 5.08677 5.09430 5.11855 5.20809 5.27025
5.28623 5.30829 5.39282 5.43155 5.48539 5.52454 5.54713 5.58432
5.66201 5.76812 5.81437 5.84729 5.89320 5.94577 6.03854 6.10989
6.27173 6.62319 6.66164 6.95212 7.22046 7.57780 7.65827 8.26107
8.33081 9.17889 10.79230
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.021235 B = 0.002714 C = 0.002675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1318.240786 B =10312.717633 C =10463.492027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.056 4.056
3 C -0.141 4.141
4 C -0.142 4.142
5 C -0.116 4.116
6 C 0.109 3.891
7 N -0.646 5.646
8 C 0.592 3.408
9 O -0.535 6.535
10 C -0.149 4.149
11 C -0.102 4.102
12 C -0.143 4.143
13 C -0.055 4.055
14 C -0.107 4.107
15 S -0.035 6.035
16 C -0.520 4.520
17 H 0.075 0.925
18 C 0.073 3.927
19 N -0.870 5.870
20 Si 0.921 3.079
21 H -0.273 1.273
22 H -0.282 1.282
23 H -0.273 1.273
24 C -0.020 4.020
25 C 0.090 3.910
26 H 0.061 0.939
27 H 0.058 0.942
28 H 0.059 0.941
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.057 0.943
33 H 0.056 0.944
34 H 0.057 0.943
35 H 0.106 0.894
36 H 0.077 0.923
37 H 0.085 0.915
38 H 0.129 0.871
39 H 0.123 0.877
40 H 0.131 0.869
41 H 0.270 0.730
42 H 0.138 0.862
43 H 0.094 0.906
44 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.580 12.821 -23.273 26.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.057 4.057
3 C -0.198 4.198
4 C -0.199 4.199
5 C -0.135 4.135
6 C -0.014 4.014
7 N -0.382 5.382
8 C 0.385 3.615
9 O -0.412 6.412
10 C -0.154 4.154
11 C -0.120 4.120
12 C -0.163 4.163
13 C -0.076 4.076
14 C -0.217 4.217
15 S 0.200 5.800
16 C -0.668 4.668
17 H 0.093 0.907
18 C -0.136 4.136
19 N -0.506 5.506
20 Si 0.747 3.253
21 H -0.198 1.198
22 H -0.207 1.207
23 H -0.198 1.198
24 C -0.041 4.041
25 C -0.032 4.032
26 H 0.079 0.921
27 H 0.077 0.923
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.076 0.924
35 H 0.124 0.876
36 H 0.095 0.905
37 H 0.103 0.897
38 H 0.147 0.853
39 H 0.141 0.859
40 H 0.149 0.851
41 H 0.080 0.920
42 H 0.156 0.844
43 H 0.112 0.888
44 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -5.130 11.111 -22.352 25.483
hybrid contribution 1.829 1.206 -0.286 2.209
sum -3.301 12.318 -22.638 25.982
Atomic orbital electron populations
1.22077 0.94438 1.02183 1.02069 1.20398 0.95636 0.95559 0.94082
1.21863 1.01157 0.94873 1.01940 1.21868 1.01266 1.00343 0.96470
1.23120 1.00537 0.95407 0.94427 1.23018 1.00977 0.96813 0.80550
1.49361 1.71138 1.11264 1.06390 1.17991 0.76052 0.84930 0.82566
1.90779 1.49146 1.15119 1.86134 1.19769 1.07645 0.95547 0.92407
1.21691 0.98001 0.93988 0.98366 1.21084 1.02799 0.99955 0.92430
1.21993 0.93876 0.93291 0.98460 1.22827 1.00782 0.97771 1.00336
1.83611 1.22000 1.56636 1.17800 1.22788 1.00072 1.26067 1.17847
0.90706 1.25000 0.98785 0.94436 0.95355 1.69983 1.37792 1.24230
1.18556 0.86176 0.82288 0.78753 0.78092 1.19827 1.20721 1.19818
1.21924 0.92435 0.99772 0.89991 1.23470 1.00535 0.83616 0.95614
0.92055 0.92327 0.92211 0.92473 0.92509 0.92389 0.92399 0.92472
0.92427 0.87625 0.90487 0.89729 0.85335 0.85932 0.85107 0.92002
0.84378 0.88821 0.89666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.77 7.15 37.15 0.27 -0.50 16
2 C -0.06 -0.30 0.74 -154.51 -0.12 -0.42 16
3 C -0.14 -0.70 8.47 37.16 0.31 -0.38 16
4 C -0.14 -0.73 8.26 37.16 0.31 -0.43 16
5 C -0.12 -0.84 3.44 -90.11 -0.31 -1.15 16
6 C 0.11 1.06 7.05 -8.52 -0.06 1.00 16
7 N -0.65 -8.34 3.68 -186.35 -0.69 -9.03 16
8 C 0.59 10.47 8.01 -12.33 -0.10 10.37 16
9 O -0.53 -11.42 17.14 5.32 0.09 -11.33 16
10 C -0.15 -2.68 5.87 -104.99 -0.62 -3.29 16
11 C -0.10 -1.50 9.16 -39.12 -0.36 -1.85 16
12 C -0.14 -2.14 10.02 -39.68 -0.40 -2.54 16
13 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16
14 C -0.11 -2.35 5.45 -39.00 -0.21 -2.56 16
15 S -0.03 -0.92 21.40 -107.50 -2.30 -3.22 16
16 C -0.52 -14.85 9.46 30.91 0.29 -14.55 16
17 H 0.07 2.11 7.79 -52.49 -0.41 1.70 16
18 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16
19 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16
20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16
21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
24 C -0.02 -0.41 9.34 -38.92 -0.36 -0.78 16
25 C 0.09 0.78 5.56 -8.52 -0.05 0.73 16
26 H 0.06 0.29 6.78 -51.93 -0.35 -0.06 16
27 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16
28 H 0.06 0.33 6.28 -51.93 -0.33 0.01 16
29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
32 H 0.06 0.31 7.43 -51.93 -0.39 -0.08 16
33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16
37 H 0.08 0.71 6.38 -51.93 -0.33 0.37 16
38 H 0.13 1.42 3.98 -52.49 -0.21 1.21 16
39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
40 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16
41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
42 H 0.14 3.13 7.66 -52.49 -0.40 2.73 16
43 H 0.09 0.66 5.63 -51.93 -0.29 0.36 16
44 H 0.09 0.71 6.39 -51.93 -0.33 0.38 16
LS Contribution 367.47 15.07 5.54 5.54
Total: -1.00 -33.62 367.47 -9.93 -43.55
By element:
Atomic # 1 Polarization: 5.10 SS G_CDS: -6.40 Total: -1.31 kcal
Atomic # 6 Polarization: -13.91 SS G_CDS: -1.88 Total: -15.79 kcal
Atomic # 7 Polarization: -34.05 SS G_CDS: 0.05 Total: -34.01 kcal
Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal
Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -33.62 -9.93 -43.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457345934.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.500 kcal
(2) G-P(sol) polarization free energy of solvation -33.616 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds