Wall clock time and date at job start Tue Mar 31 2020 13:11:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52996 * 109.47630 * 2 1
4 4 C 1.53006 * 109.47125 * 239.99675 * 2 1 3
5 5 C 1.53000 * 109.47255 * 120.00080 * 2 1 3
6 6 C 1.53496 * 114.20770 * 60.93315 * 5 2 1
7 7 N 1.47064 * 87.98948 * 220.34663 * 6 5 2
8 8 C 1.34772 * 136.06146 * 207.08376 * 7 6 5
9 9 O 1.21557 * 120.00170 * 0.51224 * 8 7 6
10 10 C 1.47859 * 120.00142 * 180.51311 * 8 7 6
11 11 C 1.39676 * 120.10389 * 7.43850 * 10 8 7
12 12 C 1.38038 * 120.04003 * 180.02562 * 11 10 8
13 13 C 1.38181 * 120.24508 * 359.97438 * 12 11 10
14 14 C 1.39178 * 120.20161 * 0.02562 * 13 12 11
15 15 S 1.76196 * 120.02119 * 180.02562 * 14 13 12
16 16 C 1.76200 * 100.00091 * 274.83677 * 15 14 13
17 17 H 1.07996 * 119.99586 * 5.01587 * 16 15 14
18 18 C 1.38729 * 119.99986 * 185.01353 * 16 15 14
19 19 N 1.31626 * 119.99855 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99955 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47234 * 60.00204 * 20 18 16
22 22 H 1.48501 * 109.47072 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47213 * 300.00099 * 20 18 16
24 24 C 1.38877 * 119.96072 * 359.76386 * 14 13 12
25 25 C 1.47070 * 87.88096 * 27.12181 * 7 6 5
26 26 H 1.09004 * 109.47278 * 308.28332 * 1 2 3
27 27 H 1.09002 * 109.47388 * 68.28182 * 1 2 3
28 28 H 1.09000 * 109.47425 * 188.28287 * 1 2 3
29 29 H 1.08995 * 109.47737 * 180.02562 * 3 2 1
30 30 H 1.09004 * 109.46779 * 300.00315 * 3 2 1
31 31 H 1.09000 * 109.47051 * 59.99420 * 3 2 1
32 32 H 1.09002 * 109.46810 * 300.00172 * 4 2 1
33 33 H 1.09000 * 109.46927 * 60.00472 * 4 2 1
34 34 H 1.08994 * 109.47102 * 180.02562 * 4 2 1
35 35 H 1.08996 * 113.41882 * 194.14120 * 5 2 1
36 36 H 1.09008 * 113.46327 * 105.56699 * 6 5 2
37 37 H 1.08999 * 113.46968 * 335.13649 * 6 5 2
38 38 H 1.07999 * 119.97264 * 0.02562 * 11 10 8
39 39 H 1.08001 * 119.87467 * 180.02562 * 12 11 10
40 40 H 1.07996 * 119.89824 * 180.02562 * 13 12 11
41 41 H 0.97006 * 119.99767 * 179.97438 * 19 18 16
42 42 H 1.08002 * 120.12273 * 180.27979 * 24 14 13
43 43 H 1.09003 * 113.46601 * 87.65786 * 25 7 6
44 44 H 1.09000 * 113.46527 * 218.03291 * 25 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 2.0400 -0.7213 1.2492
6 6 1.6085 -2.1910 1.3476
7 7 1.3899 -1.9767 2.7860
8 6 1.4101 -2.7418 3.8953
9 8 1.6702 -3.9263 3.8121
10 6 1.1157 -2.1404 5.2137
11 6 0.6659 -0.8207 5.2970
12 6 0.3920 -0.2604 6.5285
13 6 0.5605 -1.0008 7.6830
14 6 1.0082 -2.3167 7.6117
15 16 1.2207 -3.2567 9.0868
16 6 2.8487 -2.7552 9.5373
17 1 3.3541 -1.9884 8.9691
18 6 3.4811 -3.3453 10.6219
19 7 2.8651 -4.2802 11.3141
20 14 5.2066 -2.8131 11.0999
21 1 5.2045 -1.3654 11.4301
22 1 5.6544 -3.5906 12.2833
23 1 6.1331 -3.0609 9.9661
24 6 1.2821 -2.8902 6.3769
25 6 1.1385 -0.5601 2.4811
26 1 -0.3634 0.6367 0.8067
27 1 -0.3634 0.3803 -0.9547
28 1 -0.3634 -1.0169 0.1480
29 1 3.1300 1.4424 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9563 0.8899
32 1 1.6766 -1.7490 -1.2492
33 1 1.6767 -0.2075 -2.1392
34 1 3.1299 -0.7217 -1.2490
35 1 3.0988 -0.5522 1.4451
36 1 2.4123 -2.8948 1.1309
37 1 0.6939 -2.4127 0.7977
38 1 0.5324 -0.2384 4.3973
39 1 0.0440 0.7601 6.5898
40 1 0.3442 -0.5571 8.6435
41 1 3.3075 -4.6932 12.0723
42 1 1.6253 -3.9126 6.3183
43 1 0.0986 -0.3473 2.2332
44 1 1.5416 0.1230 3.2288
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457345934.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:48
Heat of formation + Delta-G solvation = 2.015640 kcal
Electronic energy + Delta-G solvation = -23891.115439 eV
Core-core repulsion = 20513.891422 eV
Total energy + Delta-G solvation = -3377.224017 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.06770 -40.23915 -38.89445 -36.53346 -34.66747 -32.66269 -31.99147 -29.94627
-28.52684 -28.10206 -27.76275 -26.66920 -25.16101 -23.64743 -23.07734 -20.82357
-19.84314 -19.31427 -18.53332 -17.82931 -17.23664 -16.94424 -16.73433 -16.31933
-15.82602 -15.66233 -15.21597 -15.10620 -14.87232 -14.61642 -14.27789 -13.99740
-13.89428 -13.74624 -13.30850 -13.14933 -13.11086 -12.96746 -12.89115 -12.72781
-12.64724 -12.43368 -12.34523 -11.93394 -11.75220 -11.69392 -11.47402 -11.25138
-11.12851 -10.96388 -10.73190 -10.10177 -9.75296 -9.66790 -8.83157 -8.40412
-6.21343 -0.22206 0.20834 1.27935 1.38296 1.44009 1.57119 1.72359
1.74845 2.23075 2.74933 2.92592 3.19051 3.36478 3.40035 3.76327
3.87994 3.93250 3.98388 4.09237 4.19733 4.30691 4.36600 4.43004
4.45862 4.47211 4.53640 4.63846 4.66859 4.80570 4.89523 4.91421
4.94668 5.03709 5.15981 5.19098 5.22464 5.23197 5.27603 5.30087
5.36396 5.46315 5.46738 5.56301 5.61378 5.83533 6.14155 6.54627
6.97846 6.99401 8.66759
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.021235 B = 0.002714 C = 0.002675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1318.240786 B =10312.717633 C =10463.492027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.048 4.048
3 C -0.141 4.141
4 C -0.144 4.144
5 C -0.097 4.097
6 C 0.100 3.900
7 N -0.646 5.646
8 C 0.583 3.417
9 O -0.591 6.591
10 C -0.153 4.153
11 C -0.077 4.077
12 C -0.120 4.120
13 C -0.063 4.063
14 C -0.126 4.126
15 S -0.097 6.097
16 C -0.537 4.537
17 H 0.069 0.931
18 C 0.019 3.981
19 N -0.907 5.907
20 Si 0.994 3.006
21 H -0.259 1.259
22 H -0.271 1.271
23 H -0.270 1.270
24 C -0.047 4.047
25 C 0.084 3.916
26 H 0.071 0.929
27 H 0.065 0.935
28 H 0.054 0.946
29 H 0.053 0.947
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.053 0.947
33 H 0.065 0.935
34 H 0.054 0.946
35 H 0.104 0.896
36 H 0.063 0.937
37 H 0.103 0.897
38 H 0.177 0.823
39 H 0.178 0.822
40 H 0.135 0.865
41 H 0.274 0.726
42 H 0.102 0.898
43 H 0.122 0.878
44 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.768 17.082 -25.633 31.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.049 4.049
3 C -0.198 4.198
4 C -0.202 4.202
5 C -0.116 4.116
6 C -0.022 4.022
7 N -0.379 5.379
8 C 0.375 3.625
9 O -0.473 6.473
10 C -0.158 4.158
11 C -0.095 4.095
12 C -0.139 4.139
13 C -0.084 4.084
14 C -0.237 4.237
15 S 0.137 5.863
16 C -0.684 4.684
17 H 0.087 0.913
18 C -0.187 4.187
19 N -0.543 5.543
20 Si 0.815 3.185
21 H -0.183 1.183
22 H -0.196 1.196
23 H -0.195 1.195
24 C -0.068 4.068
25 C -0.037 4.037
26 H 0.089 0.911
27 H 0.084 0.916
28 H 0.073 0.927
29 H 0.072 0.928
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.073 0.927
35 H 0.122 0.878
36 H 0.081 0.919
37 H 0.121 0.879
38 H 0.194 0.806
39 H 0.195 0.805
40 H 0.153 0.847
41 H 0.083 0.917
42 H 0.120 0.880
43 H 0.140 0.860
44 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -5.338 15.429 -24.759 29.657
hybrid contribution 1.808 -0.036 0.201 1.819
sum -3.530 15.393 -24.558 29.198
Atomic orbital electron populations
1.22103 0.93765 1.02121 1.02987 1.20353 0.96066 0.95681 0.92782
1.21864 1.01045 0.94252 1.02637 1.21889 1.01153 1.00257 0.96850
1.23009 1.00325 0.93281 0.94955 1.23351 1.01640 0.98505 0.78676
1.49473 1.68811 1.13152 1.06452 1.17991 0.76233 0.84585 0.83690
1.90742 1.52018 1.17538 1.87020 1.19896 1.07538 0.96798 0.91521
1.22215 0.94723 0.92257 1.00297 1.21593 1.00089 1.01624 0.90572
1.22105 0.93848 0.91902 1.00523 1.22477 1.04291 0.99145 0.97814
1.83529 1.21918 1.59228 1.21582 1.23031 1.01026 1.26128 1.18184
0.91289 1.26044 1.03292 0.94272 0.95053 1.70113 1.39715 1.25382
1.19114 0.85073 0.76442 0.79056 0.77910 1.18295 1.19585 1.19546
1.21608 0.94819 0.98976 0.91446 1.23883 1.02593 0.80937 0.96244
0.91062 0.91573 0.92749 0.92752 0.91807 0.91752 0.92811 0.91600
0.92715 0.87823 0.91882 0.87905 0.80626 0.80463 0.84696 0.91669
0.87991 0.86029 0.88302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 7.15 71.98 0.51 -0.40 16
2 C -0.05 -0.35 0.74 -52.18 -0.04 -0.38 16
3 C -0.14 -0.84 8.47 71.98 0.61 -0.23 16
4 C -0.14 -1.11 8.26 71.98 0.59 -0.52 16
5 C -0.10 -1.10 3.44 -10.46 -0.04 -1.13 16
6 C 0.10 1.76 7.05 83.17 0.59 2.35 16
7 N -0.65 -15.46 3.68 -861.77 -3.17 -18.63 16
8 C 0.58 20.75 8.01 86.79 0.69 21.45 16
9 O -0.59 -26.76 17.14 -3.89 -0.07 -26.83 16
10 C -0.15 -5.44 5.87 -20.11 -0.12 -5.56 16
11 C -0.08 -1.95 9.16 22.57 0.21 -1.75 16
12 C -0.12 -3.05 10.02 22.21 0.22 -2.83 16
13 C -0.06 -2.27 9.79 22.48 0.22 -2.05 16
14 C -0.13 -5.78 5.45 22.65 0.12 -5.66 16
15 S -0.10 -5.46 21.40 -56.49 -1.21 -6.66 16
16 C -0.54 -31.92 9.46 67.94 0.64 -31.27 16
17 H 0.07 4.03 7.79 -2.91 -0.02 4.00 16
18 C 0.02 1.08 5.49 84.84 0.47 1.54 16
19 N -0.91 -55.49 13.22 21.64 0.29 -55.21 16
20 Si 0.99 44.91 29.55 68.60 2.03 46.94 16
21 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16
22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
24 C -0.05 -2.09 9.34 22.70 0.21 -1.88 16
25 C 0.08 1.07 5.56 83.17 0.46 1.53 16
26 H 0.07 0.30 6.78 -2.38 -0.02 0.28 16
27 H 0.07 0.34 8.13 -2.39 -0.02 0.32 16
28 H 0.05 0.40 6.28 -2.39 -0.01 0.39 16
29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16
30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16
31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16
32 H 0.05 0.46 7.43 -2.39 -0.02 0.44 16
33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16
37 H 0.10 1.48 6.38 -2.39 -0.02 1.46 16
38 H 0.18 2.77 3.98 -2.91 -0.01 2.76 16
39 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16
40 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16
41 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16
42 H 0.10 5.17 7.66 -2.91 -0.02 5.15 16
43 H 0.12 0.99 5.63 -2.39 -0.01 0.98 16
44 H 0.10 1.06 6.39 -2.39 -0.02 1.05 16
Total: -1.00 -80.62 367.47 4.23 -76.39
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: 1.00 Total: 10.78 kcal
Atomic # 6 Polarization: -32.14 SS G_CDS: 5.36 Total: -26.78 kcal
Atomic # 7 Polarization: -70.95 SS G_CDS: -2.88 Total: -73.84 kcal
Atomic # 8 Polarization: -26.76 SS G_CDS: -0.07 Total: -26.83 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal
Atomic # 16 Polarization: -5.46 SS G_CDS: -1.21 Total: -6.66 kcal
Total: -80.62 4.23 -76.39 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457345934.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.409 kcal
(2) G-P(sol) polarization free energy of solvation -80.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds