Wall clock time and date at job start Tue Mar 31 2020 13:43:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50700 * 119.99724 * 2 1
4 4 S 1.81400 * 109.47056 * 115.00251 * 3 2 1
5 5 C 1.76200 * 103.00030 * 180.02562 * 4 3 2
6 6 C 1.39052 * 120.18318 * 359.97438 * 5 4 3
7 7 C 1.37906 * 120.05673 * 180.02562 * 6 5 4
8 8 C 1.38644 * 120.43988 * 359.97438 * 7 6 5
9 9 C 1.37744 * 120.36552 * 359.97438 * 8 7 6
10 10 C 1.39737 * 119.93363 * 0.02562 * 9 8 7
11 11 C 1.47393 * 120.21614 * 180.02562 * 10 9 8
12 12 O 1.21604 * 119.99886 * 180.02562 * 11 10 9
13 13 N 1.34778 * 119.99652 * 359.97438 * 11 10 9
14 14 C 1.46494 * 119.99688 * 180.02562 * 13 11 10
15 15 C 1.53000 * 109.47133 * 180.02562 * 14 13 11
16 16 C 1.53007 * 109.46807 * 299.99993 * 15 14 13
17 17 C 1.53001 * 109.47260 * 59.99695 * 15 14 13
18 18 C 1.50700 * 109.47239 * 180.02562 * 15 14 13
19 19 H 1.07996 * 120.00086 * 1.34503 * 18 15 14
20 20 C 1.37883 * 119.99869 * 181.34348 * 18 15 14
21 21 N 1.31513 * 119.99663 * 193.97610 * 20 18 15
22 22 Si 1.86800 * 120.00004 * 13.97421 * 20 18 15
23 23 H 1.48500 * 109.46875 * 84.55056 * 22 20 18
24 24 H 1.48500 * 109.47084 * 204.54581 * 22 20 18
25 25 H 1.48499 * 109.47402 * 324.55244 * 22 20 18
26 26 H 1.07998 * 119.99388 * 179.97438 * 1 2 3
27 27 H 1.08000 * 120.00283 * 359.97438 * 1 2 3
28 28 H 1.08000 * 120.00283 * 180.02562 * 2 1 3
29 29 H 1.09004 * 109.47217 * 355.00324 * 3 2 1
30 30 H 1.09005 * 109.47436 * 235.00220 * 3 2 1
31 31 H 1.07995 * 119.96982 * 0.02562 * 6 5 4
32 32 H 1.08003 * 119.77988 * 180.27738 * 7 6 5
33 33 H 1.08000 * 119.82194 * 179.97438 * 8 7 6
34 34 H 1.08007 * 120.03227 * 180.02562 * 9 8 7
35 35 H 0.97002 * 120.00169 * 0.02562 * 13 11 10
36 36 H 1.08997 * 109.47401 * 300.00071 * 14 13 11
37 37 H 1.08994 * 109.47297 * 60.00368 * 14 13 11
38 38 H 1.08996 * 109.47317 * 69.36672 * 16 15 14
39 39 H 1.08999 * 109.47187 * 189.36865 * 16 15 14
40 40 H 1.09000 * 109.46792 * 309.36455 * 16 15 14
41 41 H 1.08997 * 109.47097 * 60.00638 * 17 15 14
42 42 H 1.09004 * 109.46588 * 180.02562 * 17 15 14
43 43 H 1.08996 * 109.47432 * 300.00120 * 17 15 14
44 44 H 0.97006 * 119.99525 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 16 2.9918 1.4674 1.5500
5 6 3.7938 3.0260 1.3704
6 6 3.6075 3.7792 0.2165
7 6 4.2369 4.9985 0.0784
8 6 5.0578 5.4832 1.0851
9 6 5.2541 4.7522 2.2360
10 6 4.6239 3.5148 2.3921
11 6 4.8291 2.7277 3.6213
12 8 4.2791 1.6512 3.7528
13 7 5.6271 3.2008 4.5990
14 6 5.8315 2.4183 5.8204
15 6 6.7722 3.1756 6.7598
16 6 8.1173 3.3971 6.0649
17 6 6.1544 4.5286 7.1183
18 6 6.9830 2.3703 8.0161
19 1 6.5123 1.4043 8.1236
20 6 7.7769 2.8669 9.0282
21 7 8.1865 2.0721 9.9926
22 14 8.2706 4.6684 9.0295
23 1 7.1943 5.4761 9.6576
24 1 9.5290 4.8363 9.7997
25 1 8.4807 5.1252 7.6321
26 1 -0.5399 -0.9353 -0.0004
27 1 -0.5400 0.9353 0.0004
28 1 1.8500 -0.9353 -0.0004
29 1 1.3585 2.1317 -0.0895
30 1 2.7556 1.3252 -0.8419
31 1 2.9693 3.4091 -0.5722
32 1 4.0854 5.5819 -0.8178
33 1 5.5462 6.4391 0.9663
34 1 5.8945 5.1351 3.0169
35 1 6.0661 4.0594 4.4938
36 1 4.8734 2.2608 6.3156
37 1 6.2713 1.4542 5.5650
38 1 7.9931 4.1135 5.2529
39 1 8.8384 3.7848 6.7844
40 1 8.4785 2.4507 5.6625
41 1 5.1963 4.3708 7.6134
42 1 6.8249 5.0682 7.7873
43 1 6.0024 5.1109 6.2096
44 1 8.7453 2.4213 10.7044
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457999025.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:43:27
Heat of formation + Delta-G solvation = 5.699219 kcal
Electronic energy + Delta-G solvation = -24022.432230 eV
Core-core repulsion = 20645.367944 eV
Total energy + Delta-G solvation = -3377.064285 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.25989 -39.41854 -38.31296 -35.72437 -35.11076 -33.59982 -32.14496 -32.10208
-28.33979 -28.05849 -27.72661 -26.98724 -24.63032 -23.66140 -21.76722 -21.04840
-20.78290 -19.27012 -18.21271 -17.93805 -17.16636 -16.90997 -16.52634 -16.36758
-16.23008 -15.65299 -15.61481 -15.08740 -15.04134 -14.88043 -14.73624 -14.48557
-14.12157 -13.99882 -13.77677 -13.75862 -13.23408 -12.93702 -12.75151 -12.41646
-12.27287 -12.22453 -12.11932 -11.96660 -11.78476 -11.63062 -11.07911 -10.79937
-10.67865 -10.62638 -10.40457 -10.19656 -9.95731 -9.91923 -8.39894 -8.30667
-6.32819 -0.21399 0.24427 0.34472 1.36220 1.37870 1.39937 1.51130
1.78928 1.87443 2.24768 2.34622 2.79082 3.05284 3.70447 3.76087
3.80335 3.99720 4.06194 4.09386 4.30356 4.31576 4.38921 4.40987
4.43240 4.56474 4.60544 4.72997 4.80418 4.82726 4.88341 4.93581
4.96873 5.03829 5.12083 5.15481 5.29405 5.39003 5.44054 5.50831
5.62646 5.70622 5.70958 5.78220 5.85565 6.29206 6.57665 6.71789
7.22340 7.32033 8.86747
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.019432 B = 0.003123 C = 0.002763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.568274 B = 8964.848360 C =10133.108410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.160 4.160
3 C -0.114 4.114
4 S -0.074 6.074
5 C -0.059 4.059
6 C -0.149 4.149
7 C -0.065 4.065
8 C -0.130 4.130
9 C -0.069 4.069
10 C -0.151 4.151
11 C 0.538 3.462
12 O -0.558 6.558
13 N -0.704 5.704
14 C 0.159 3.841
15 C 0.029 3.971
16 C -0.142 4.142
17 C -0.148 4.148
18 C -0.520 4.520
19 H 0.026 0.974
20 C 0.016 3.984
21 N -0.947 5.947
22 Si 0.946 3.054
23 H -0.281 1.281
24 H -0.314 1.314
25 H -0.201 1.201
26 H 0.117 0.883
27 H 0.107 0.893
28 H 0.114 0.886
29 H 0.099 0.901
30 H 0.103 0.897
31 H 0.147 0.853
32 H 0.167 0.833
33 H 0.166 0.834
34 H 0.147 0.853
35 H 0.409 0.591
36 H 0.042 0.958
37 H 0.040 0.960
38 H 0.066 0.934
39 H 0.048 0.952
40 H 0.039 0.961
41 H 0.045 0.955
42 H 0.038 0.962
43 H 0.074 0.926
44 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.107 10.165 -26.723 30.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.179 4.179
3 C -0.261 4.261
4 S 0.176 5.824
5 C -0.174 4.174
6 C -0.173 4.173
7 C -0.085 4.085
8 C -0.151 4.151
9 C -0.089 4.089
10 C -0.161 4.161
11 C 0.327 3.673
12 O -0.439 6.439
13 N -0.357 5.357
14 C 0.035 3.965
15 C 0.028 3.972
16 C -0.199 4.199
17 C -0.205 4.205
18 C -0.558 4.558
19 H 0.044 0.956
20 C -0.181 4.181
21 N -0.586 5.586
22 Si 0.774 3.226
23 H -0.208 1.208
24 H -0.244 1.244
25 H -0.125 1.125
26 H 0.135 0.865
27 H 0.126 0.874
28 H 0.132 0.868
29 H 0.117 0.883
30 H 0.121 0.879
31 H 0.165 0.835
32 H 0.184 0.816
33 H 0.183 0.817
34 H 0.165 0.835
35 H 0.248 0.752
36 H 0.060 0.940
37 H 0.058 0.942
38 H 0.085 0.915
39 H 0.067 0.933
40 H 0.058 0.942
41 H 0.065 0.935
42 H 0.056 0.944
43 H 0.092 0.908
44 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -10.407 8.460 -25.558 28.863
hybrid contribution 0.498 1.020 0.178 1.149
sum -9.909 9.480 -25.380 28.848
Atomic orbital electron populations
1.24142 0.95218 1.03395 0.97356 1.22387 0.96304 0.96543 1.02698
1.23144 1.02598 1.00261 1.00113 1.87663 1.53571 1.18816 1.22355
1.22292 0.99183 0.98701 0.97185 1.21428 1.03236 0.96526 0.96136
1.21697 0.93127 0.94037 0.99621 1.21526 0.99486 1.01395 0.92700
1.21563 0.96613 0.91503 0.99188 1.19563 1.04215 0.98060 0.94281
1.18715 0.79021 0.85608 0.83994 1.90690 1.49846 1.23460 1.79903
1.45893 1.48289 1.23978 1.17507 1.21046 0.98255 0.93717 0.83434
1.18643 0.92689 0.93189 0.92686 1.22233 0.97661 1.00460 0.99548
1.22305 1.00157 0.97148 1.00853 1.21026 1.29776 1.03778 1.01240
0.95598 1.25891 0.94776 1.02595 0.94870 1.70120 1.36227 1.37538
1.14730 0.86319 0.75818 0.80127 0.80300 1.20804 1.24400 1.12477
0.86476 0.87447 0.86769 0.88294 0.87882 0.83500 0.81589 0.81684
0.83537 0.75189 0.93972 0.94169 0.91486 0.93343 0.94177 0.93536
0.94396 0.90766 0.92627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.28 14.32 67.78 0.97 -1.31 16
2 C -0.16 -2.80 9.52 25.65 0.24 -2.55 16
3 C -0.11 -2.07 4.78 71.24 0.34 -1.72 16
4 S -0.07 -2.13 18.81 -56.49 -1.06 -3.20 16
5 C -0.06 -1.51 6.16 23.00 0.14 -1.37 16
6 C -0.15 -2.59 9.36 22.39 0.21 -2.38 16
7 C -0.06 -0.80 10.02 22.29 0.22 -0.58 16
8 C -0.13 -1.70 10.02 22.25 0.22 -1.48 16
9 C -0.07 -1.31 9.53 22.52 0.21 -1.09 16
10 C -0.15 -4.15 5.89 -19.97 -0.12 -4.26 16
11 C 0.54 18.91 7.75 86.65 0.67 19.58 16
12 O -0.56 -23.94 13.77 -4.04 -0.06 -24.00 16
13 N -0.70 -23.22 4.95 -466.43 -2.31 -25.53 16
14 C 0.16 6.63 4.49 86.38 0.39 7.02 16
15 C 0.03 1.25 0.50 -52.92 -0.03 1.23 16
16 C -0.14 -5.41 7.53 71.98 0.54 -4.87 16
17 C -0.15 -5.56 7.52 71.98 0.54 -5.02 16
18 C -0.52 -29.17 8.62 25.60 0.22 -28.95 16
19 H 0.03 1.66 7.99 -2.91 -0.02 1.63 16
20 C 0.02 0.92 5.32 84.66 0.45 1.37 16
21 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16
22 Si 0.95 42.64 22.79 68.60 1.56 44.20 16
23 H -0.28 -12.40 7.10 99.48 0.71 -11.69 16
24 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16
25 H -0.20 -7.55 4.65 99.48 0.46 -7.09 16
26 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16
27 H 0.11 1.31 7.84 -2.91 -0.02 1.28 16
28 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16
29 H 0.10 1.48 7.40 -2.39 -0.02 1.46 16
30 H 0.10 1.55 7.75 -2.39 -0.02 1.53 16
31 H 0.15 1.86 5.90 -2.91 -0.02 1.85 16
32 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16
33 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16
34 H 0.15 2.19 6.40 -2.91 -0.02 2.17 16
35 H 0.41 10.66 4.29 -92.71 -0.40 10.26 16
36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16
37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16
38 H 0.07 1.94 7.13 -2.39 -0.02 1.93 16
39 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16
40 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16
41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
42 H 0.04 1.47 2.25 -2.39 -0.01 1.46 16
43 H 0.07 2.11 6.86 -2.39 -0.02 2.10 16
44 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16
Total: -1.00 -76.11 355.68 4.04 -72.07
By element:
Atomic # 1 Polarization: 21.51 SS G_CDS: 0.37 Total: 21.88 kcal
Atomic # 6 Polarization: -31.62 SS G_CDS: 5.24 Total: -26.38 kcal
Atomic # 7 Polarization: -82.56 SS G_CDS: -2.01 Total: -84.57 kcal
Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.00 kcal
Atomic # 14 Polarization: 42.64 SS G_CDS: 1.56 Total: 44.20 kcal
Atomic # 16 Polarization: -2.13 SS G_CDS: -1.06 Total: -3.20 kcal
Total: -76.11 4.04 -72.07 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457999025.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.766 kcal
(2) G-P(sol) polarization free energy of solvation -76.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds