Wall clock time and date at job start Tue Mar 31 2020 12:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35448 * 126.77769 * 2 1 4 4 C 1.41378 * 103.98847 * 180.13611 * 3 2 1 5 5 C 1.50695 * 126.80572 * 179.88749 * 4 3 2 6 6 N 1.46500 * 109.47528 * 94.70880 * 5 4 3 7 7 C 1.34773 * 120.00089 * 180.02562 * 6 5 4 8 8 O 1.21832 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.33833 * 119.99673 * 179.97438 * 7 6 5 10 10 C 1.32938 * 120.00243 * 180.02562 * 9 7 6 11 11 C 1.41208 * 126.37505 * 359.97161 * 10 9 7 12 12 C 1.34952 * 108.24504 * 180.02562 * 11 10 9 13 13 C 1.50707 * 125.52645 * 179.97438 * 12 11 10 14 14 N 1.36451 * 108.94872 * 0.02562 * 12 11 10 15 15 C 1.46500 * 125.85343 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46949 * 84.99522 * 15 14 12 17 17 H 1.07995 * 120.00167 * 359.72205 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 N 1.37417 * 126.38177 * 180.25234 * 10 9 7 25 25 H 0.96996 * 126.36623 * 0.02562 * 24 10 9 26 26 N 1.30177 * 106.39349 * 359.62212 * 4 3 2 27 27 O 1.20918 * 111.60544 * 0.24231 * 26 4 3 28 28 H 1.08998 * 109.47005 * 180.30428 * 1 2 3 29 29 H 1.09007 * 109.47026 * 300.30561 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.30432 * 1 2 3 31 31 H 1.08008 * 128.00702 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47056 * 334.70820 * 5 4 3 33 33 H 1.08998 * 109.47324 * 214.71031 * 5 4 3 34 34 H 0.97006 * 119.99784 * 359.97438 * 6 5 4 35 35 H 1.08003 * 125.87957 * 0.02562 * 11 10 9 36 36 H 1.09003 * 109.46936 * 270.02637 * 13 12 11 37 37 H 1.08995 * 109.47059 * 30.02253 * 13 12 11 38 38 H 1.08996 * 109.47117 * 150.02849 * 13 12 11 39 39 H 1.09000 * 109.47175 * 324.99547 * 15 14 12 40 40 H 1.09001 * 109.47297 * 204.99055 * 15 14 12 41 41 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0033 5 6 4.9211 1.3000 -0.0070 6 7 5.4034 1.4499 1.3682 7 6 6.5568 2.1036 1.6102 8 8 7.1987 2.5695 0.6855 9 7 6.9971 2.2410 2.8666 10 6 8.1345 2.8863 3.1056 11 6 8.9812 3.4762 2.1416 12 6 10.0308 4.0304 2.7837 13 6 11.1720 4.7631 2.1264 14 7 9.8918 3.8190 4.1246 15 6 10.8226 4.2644 5.1645 16 6 10.5004 5.6847 5.5522 17 1 9.6869 6.2051 5.0689 18 6 11.2477 6.3213 6.5204 19 7 10.9669 7.5608 6.8584 20 14 12.6599 5.4238 7.3509 21 1 13.9114 5.6544 6.5856 22 1 12.8249 5.9346 8.7354 23 1 12.3657 3.9688 7.3919 24 7 8.7081 3.0988 4.3361 25 1 8.3584 2.8056 5.1920 26 7 3.4764 -0.7564 0.0034 27 8 2.3096 -1.0736 0.0053 28 1 -0.3633 -1.0276 0.0055 29 1 -0.3633 0.5186 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1271 -0.0004 32 1 4.7630 2.2851 -0.4460 33 1 5.6604 0.7551 -0.5939 34 1 4.8921 1.0793 2.1046 35 1 8.8170 3.4827 1.0741 36 1 11.9652 4.0563 1.8828 37 1 10.8186 5.2414 1.2130 38 1 11.5576 5.5213 2.8079 39 1 11.8430 4.2141 4.7846 40 1 10.7277 3.6190 6.0378 41 1 11.4929 8.0089 7.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539717733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:11 Heat of formation + Delta-G solvation = 134.532928 kcal Electronic energy + Delta-G solvation = -25202.125525 eV Core-core repulsion = 21316.647425 eV Total energy + Delta-G solvation = -3885.478100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.17256 -40.92173 -38.91627 -35.74382 -34.36207 -33.84213 -33.07378 -32.82146 -32.25533 -30.96312 -28.13952 -27.70001 -27.53036 -26.50665 -23.33509 -22.78784 -21.72887 -20.36239 -19.86907 -19.56502 -17.85667 -17.65273 -17.42718 -17.20001 -16.30640 -15.68124 -15.21345 -14.93742 -14.65637 -14.61995 -14.11631 -13.98482 -13.88404 -13.63519 -13.05448 -12.98501 -12.93527 -12.86321 -12.74199 -12.53589 -12.43162 -12.28973 -11.89633 -11.48340 -11.33443 -11.03419 -10.67111 -10.54358 -10.04318 -9.72951 -9.56925 -9.52315 -9.04546 -8.89034 -8.67648 -8.39082 -6.85114 -6.51446 -4.59551 1.21275 1.71060 1.84801 2.03799 2.85437 2.95913 3.00994 3.07084 3.09396 3.65680 3.96866 3.97507 4.19171 4.39217 4.62949 4.76143 4.77094 4.91132 4.99529 5.00125 5.03861 5.30296 5.38984 5.53261 5.59878 5.70256 5.73783 5.81315 5.82366 5.98007 6.03708 6.15917 6.29755 6.42048 6.67043 6.93915 6.97346 7.33292 7.58817 7.75103 8.01689 8.04374 8.26535 8.40774 8.53025 9.01212 9.57263 10.59982 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002078 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.060735 B =13469.590901 C =13806.470998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.038 4.038 3 C -0.220 4.220 4 C 0.007 3.993 5 C 0.221 3.779 6 N -0.726 5.726 7 C 0.689 3.311 8 O -0.630 6.630 9 N -0.711 5.711 10 C 0.492 3.508 11 C -0.330 4.330 12 C 0.192 3.808 13 C -0.101 4.101 14 N -0.344 5.344 15 C 0.229 3.771 16 C -0.561 4.561 17 H 0.085 0.915 18 C 0.084 3.916 19 N -0.876 5.876 20 Si 0.873 3.127 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.265 1.265 24 N -0.470 5.470 25 H 0.445 0.555 26 N -0.350 5.350 27 O 0.104 5.896 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.398 0.602 35 H 0.184 0.816 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -11.199 -10.385 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.241 4.241 4 C -0.152 4.152 5 C 0.095 3.905 6 N -0.382 5.382 7 C 0.388 3.612 8 O -0.512 6.512 9 N -0.476 5.476 10 C 0.239 3.761 11 C -0.363 4.363 12 C 0.067 3.933 13 C -0.159 4.159 14 N -0.131 5.131 15 C 0.111 3.889 16 C -0.599 4.599 17 H 0.103 0.897 18 C -0.123 4.123 19 N -0.511 5.511 20 Si 0.698 3.302 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.190 1.190 24 N -0.193 5.193 25 H 0.292 0.708 26 N -0.052 5.052 27 O 0.034 5.966 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.191 0.809 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.232 0.768 35 H 0.201 0.799 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.572 -12.024 -10.025 19.468 hybrid contribution 0.184 0.469 0.971 1.094 sum -11.388 -11.555 -9.054 18.579 Atomic orbital electron populations 1.20340 0.83933 1.04656 1.04173 1.24530 0.96443 0.86145 1.03041 1.22465 0.91139 1.01239 1.09305 1.23652 0.97458 0.90031 1.04086 1.19169 0.88032 0.98264 0.85020 1.44579 1.25016 1.61587 1.07036 1.16509 0.80839 0.78397 0.85459 1.90736 1.57766 1.54066 1.48614 1.68013 1.17760 1.39088 1.22691 1.18643 0.88341 0.86216 0.82911 1.22217 0.97699 1.14009 1.02348 1.21280 0.97047 0.93263 0.81731 1.20670 0.94092 1.00053 1.01068 1.47294 1.12361 1.46618 1.06848 1.20281 0.86452 0.97157 0.85029 1.21235 1.19700 0.95270 1.23721 0.89664 1.24822 0.97027 0.94730 0.95694 1.69860 1.39581 1.11109 1.30582 0.86917 0.82932 0.80289 0.80043 1.19319 1.20294 1.18975 1.44310 1.15266 1.51151 1.08585 0.70821 1.73907 0.96780 1.16427 1.18101 1.84847 1.11324 1.33305 1.67080 0.89906 0.89094 0.89150 0.80898 0.89687 0.90370 0.76840 0.79862 0.89920 0.89147 0.88961 0.92397 0.93447 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.01 0.38 0.09 16 2 C -0.04 -0.32 7.49 -35.30 -0.26 -0.58 16 3 C -0.22 -2.08 11.06 -39.38 -0.44 -2.52 16 4 C 0.01 0.08 6.70 -82.10 -0.55 -0.47 16 5 C 0.22 3.07 6.26 -5.20 -0.03 3.03 16 6 N -0.73 -11.86 5.55 -66.62 -0.37 -12.23 16 7 C 0.69 13.89 8.47 -87.76 -0.74 13.15 16 8 O -0.63 -13.86 13.26 5.07 0.07 -13.80 16 9 N -0.71 -14.52 10.59 -15.79 -0.17 -14.68 16 10 C 0.49 9.89 8.07 -155.29 -1.25 8.63 16 11 C -0.33 -6.45 9.41 -39.62 -0.37 -6.82 16 12 C 0.19 3.43 6.92 -81.70 -0.57 2.86 16 13 C -0.10 -1.41 9.92 36.01 0.36 -1.05 16 14 N -0.34 -6.50 3.63 -58.04 -0.21 -6.71 16 15 C 0.23 4.51 4.78 -5.19 -0.02 4.48 16 16 C -0.56 -13.62 9.94 -34.44 -0.34 -13.97 16 17 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.88 -23.85 13.96 55.43 0.77 -23.08 16 20 Si 0.87 17.94 27.47 -169.99 -4.67 13.27 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.11 6.54 56.52 0.37 -4.74 16 24 N -0.47 -8.62 7.38 31.33 0.23 -8.39 16 25 H 0.44 7.09 8.96 -182.55 -1.64 5.45 16 26 N -0.35 -4.65 12.07 33.42 0.40 -4.25 16 27 O 0.10 1.15 11.20 17.17 0.19 1.35 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.40 6.08 8.57 -40.82 -0.35 5.73 16 35 H 0.18 3.74 5.77 -52.48 -0.30 3.44 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.39 7.80 -51.93 -0.40 0.98 16 39 H 0.06 1.05 7.31 -51.93 -0.38 0.67 16 40 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -32.45 357.83 -8.72 -41.17 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.42 Total: 13.13 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -3.95 Total: 8.82 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: 0.66 Total: -69.34 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.26 Total: -12.45 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -4.67 Total: 13.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.45 -8.72 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539717733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.708 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds