Wall clock time and date at job start Tue Mar 31 2020 12:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35448 * 126.77769 * 2 1 4 4 C 1.41378 * 103.98847 * 180.13611 * 3 2 1 5 5 C 1.50695 * 126.80572 * 179.88749 * 4 3 2 6 6 N 1.46500 * 109.47528 * 94.70880 * 5 4 3 7 7 C 1.34773 * 120.00089 * 180.02562 * 6 5 4 8 8 O 1.21832 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.33833 * 119.99673 * 179.97438 * 7 6 5 10 10 C 1.32938 * 120.00243 * 180.02562 * 9 7 6 11 11 C 1.41208 * 126.37505 * 359.97161 * 10 9 7 12 12 C 1.34952 * 108.24504 * 180.02562 * 11 10 9 13 13 C 1.50707 * 125.52645 * 179.97438 * 12 11 10 14 14 N 1.36451 * 108.94872 * 0.02562 * 12 11 10 15 15 C 1.46500 * 125.85343 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46949 * 84.99522 * 15 14 12 17 17 H 1.07995 * 120.00167 * 359.72205 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 N 1.37417 * 126.38177 * 180.25234 * 10 9 7 25 25 H 0.96996 * 126.36623 * 0.02562 * 24 10 9 26 26 N 1.30177 * 106.39349 * 359.62212 * 4 3 2 27 27 O 1.20918 * 111.60544 * 0.24231 * 26 4 3 28 28 H 1.08998 * 109.47005 * 180.30428 * 1 2 3 29 29 H 1.09007 * 109.47026 * 300.30561 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.30432 * 1 2 3 31 31 H 1.08008 * 128.00702 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47056 * 334.70820 * 5 4 3 33 33 H 1.08998 * 109.47324 * 214.71031 * 5 4 3 34 34 H 0.97006 * 119.99784 * 359.97438 * 6 5 4 35 35 H 1.08003 * 125.87957 * 0.02562 * 11 10 9 36 36 H 1.09003 * 109.46936 * 270.02637 * 13 12 11 37 37 H 1.08995 * 109.47059 * 30.02253 * 13 12 11 38 38 H 1.08996 * 109.47117 * 150.02849 * 13 12 11 39 39 H 1.09000 * 109.47175 * 324.99547 * 15 14 12 40 40 H 1.09001 * 109.47297 * 204.99055 * 15 14 12 41 41 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0033 5 6 4.9211 1.3000 -0.0070 6 7 5.4034 1.4499 1.3682 7 6 6.5568 2.1036 1.6102 8 8 7.1987 2.5695 0.6855 9 7 6.9971 2.2410 2.8666 10 6 8.1345 2.8863 3.1056 11 6 8.9812 3.4762 2.1416 12 6 10.0308 4.0304 2.7837 13 6 11.1720 4.7631 2.1264 14 7 9.8918 3.8190 4.1246 15 6 10.8226 4.2644 5.1645 16 6 10.5004 5.6847 5.5522 17 1 9.6869 6.2051 5.0689 18 6 11.2477 6.3213 6.5204 19 7 10.9669 7.5608 6.8584 20 14 12.6599 5.4238 7.3509 21 1 13.9114 5.6544 6.5856 22 1 12.8249 5.9346 8.7354 23 1 12.3657 3.9688 7.3919 24 7 8.7081 3.0988 4.3361 25 1 8.3584 2.8056 5.1920 26 7 3.4764 -0.7564 0.0034 27 8 2.3096 -1.0736 0.0053 28 1 -0.3633 -1.0276 0.0055 29 1 -0.3633 0.5186 0.8873 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1271 -0.0004 32 1 4.7630 2.2851 -0.4460 33 1 5.6604 0.7551 -0.5939 34 1 4.8921 1.0793 2.1046 35 1 8.8170 3.4827 1.0741 36 1 11.9652 4.0563 1.8828 37 1 10.8186 5.2414 1.2130 38 1 11.5576 5.5213 2.8079 39 1 11.8430 4.2141 4.7846 40 1 10.7277 3.6190 6.0378 41 1 11.4929 8.0089 7.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539717733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:11 Heat of formation + Delta-G solvation = 110.957284 kcal Electronic energy + Delta-G solvation = -25203.147842 eV Core-core repulsion = 21316.647425 eV Total energy + Delta-G solvation = -3886.500417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.03143 -42.41646 -40.41288 -36.93667 -35.90276 -34.78156 -34.61073 -33.89079 -33.71001 -32.59978 -29.21854 -28.83674 -28.65001 -27.86652 -24.56423 -24.11705 -23.19384 -21.42873 -21.20686 -20.96997 -19.27610 -18.94746 -18.73766 -18.22885 -17.74257 -17.15444 -16.71898 -16.41824 -16.03409 -15.79803 -15.48593 -15.13215 -14.72483 -14.67236 -14.32713 -14.29425 -14.02421 -13.93230 -13.84286 -13.76160 -13.65701 -13.28819 -13.16715 -13.00617 -12.60489 -12.26316 -12.13940 -11.84901 -11.53520 -11.17653 -11.15722 -10.91098 -10.33791 -10.28941 -10.06362 -9.98226 -8.43456 -8.37623 -6.55500 0.21071 0.41946 0.54301 1.04716 1.38513 1.39888 1.48315 1.58182 2.19040 2.25495 2.36690 2.87552 2.97028 3.02389 3.09763 3.46987 3.66740 4.07767 4.13059 4.21509 4.27351 4.28484 4.45768 4.48931 4.60628 4.64715 4.77438 4.78358 4.82187 4.92143 4.93964 4.96660 5.06898 5.15388 5.27496 5.28199 5.58674 5.86596 6.00593 6.09085 6.39413 6.53531 6.82046 6.89540 7.10378 7.23898 8.03378 8.74094 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002078 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.060735 B =13469.590901 C =13806.470998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 C -0.228 4.228 4 C -0.008 4.008 5 C 0.225 3.775 6 N -0.716 5.716 7 C 0.677 3.323 8 O -0.655 6.655 9 N -0.721 5.721 10 C 0.476 3.524 11 C -0.348 4.348 12 C 0.200 3.800 13 C -0.099 4.099 14 N -0.349 5.349 15 C 0.234 3.766 16 C -0.561 4.561 17 H 0.032 0.968 18 C 0.026 3.974 19 N -0.933 5.933 20 Si 0.946 3.054 21 H -0.254 1.254 22 H -0.287 1.287 23 H -0.236 1.236 24 N -0.466 5.466 25 H 0.453 0.547 26 N -0.383 5.383 27 O 0.099 5.901 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.195 0.805 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.174 0.826 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -12.597 -10.339 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.250 4.250 4 C -0.166 4.166 5 C 0.100 3.900 6 N -0.371 5.371 7 C 0.376 3.624 8 O -0.539 6.539 9 N -0.486 5.486 10 C 0.223 3.777 11 C -0.380 4.380 12 C 0.075 3.925 13 C -0.157 4.157 14 N -0.136 5.136 15 C 0.116 3.884 16 C -0.599 4.599 17 H 0.051 0.949 18 C -0.175 4.175 19 N -0.571 5.571 20 Si 0.767 3.233 21 H -0.178 1.178 22 H -0.213 1.213 23 H -0.159 1.159 24 N -0.190 5.190 25 H 0.302 0.698 26 N -0.086 5.086 27 O 0.030 5.970 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.212 0.788 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.237 0.763 35 H 0.191 0.809 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.427 -13.461 -9.989 20.287 hybrid contribution -0.024 0.945 0.898 1.304 sum -11.451 -12.516 -9.092 19.247 Atomic orbital electron populations 1.20611 0.80451 1.06065 1.05853 1.25331 0.98067 0.84854 1.00475 1.22727 0.89860 1.02639 1.09729 1.23548 0.97725 0.90130 1.05168 1.19139 0.88676 0.98733 0.83476 1.44545 1.23874 1.60376 1.08278 1.16795 0.81660 0.78752 0.85206 1.90710 1.58762 1.55324 1.49116 1.68064 1.18118 1.39610 1.22856 1.18858 0.88587 0.86567 0.83699 1.22124 0.98581 1.15316 1.01975 1.21847 0.97392 0.92032 0.81230 1.20855 0.93587 1.00204 1.01025 1.47342 1.12391 1.46717 1.07164 1.20231 0.87767 0.94377 0.86070 1.21328 1.17989 0.97382 1.23192 0.94937 1.25789 1.00109 0.95309 0.96319 1.70032 1.41639 1.13492 1.31923 0.85754 0.79181 0.80247 0.78072 1.17785 1.21301 1.15896 1.44317 1.15164 1.50930 1.08596 0.69782 1.73896 0.98090 1.17025 1.19587 1.84805 1.11009 1.34307 1.66886 0.88692 0.87454 0.87116 0.78818 0.89022 0.91733 0.76275 0.80876 0.86533 0.87582 0.89893 0.89297 0.91641 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 71.24 0.74 0.40 16 2 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16 3 C -0.23 -4.02 11.06 22.40 0.25 -3.77 16 4 C -0.01 -0.20 6.70 43.58 0.29 0.09 16 5 C 0.22 6.39 6.26 85.63 0.54 6.93 16 6 N -0.72 -23.82 5.55 -482.85 -2.68 -26.50 16 7 C 0.68 27.90 8.47 179.35 1.52 29.42 16 8 O -0.65 -29.58 13.26 -4.77 -0.06 -29.64 16 9 N -0.72 -29.89 10.59 -322.56 -3.42 -33.31 16 10 C 0.48 19.27 8.07 133.95 1.08 20.35 16 11 C -0.35 -13.62 9.41 22.24 0.21 -13.42 16 12 C 0.20 6.95 6.92 41.09 0.28 7.23 16 13 C -0.10 -2.56 9.92 71.24 0.71 -1.85 16 14 N -0.35 -12.78 3.63 -337.52 -1.23 -14.00 16 15 C 0.23 8.66 4.78 85.63 0.41 9.07 16 16 C -0.56 -27.22 9.94 25.60 0.25 -26.96 16 17 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 18 C 0.03 1.27 5.47 84.66 0.46 1.73 16 19 N -0.93 -51.99 13.96 21.45 0.30 -51.69 16 20 Si 0.95 35.39 27.47 68.60 1.88 37.28 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 22 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.24 -7.67 6.54 99.48 0.65 -7.02 16 24 N -0.47 -16.89 7.38 -54.78 -0.40 -17.30 16 25 H 0.45 14.20 8.96 -213.28 -1.91 12.29 16 26 N -0.38 -10.23 12.07 -49.56 -0.60 -10.83 16 27 O 0.10 2.13 11.20 71.60 0.80 2.94 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.40 12.49 8.57 -92.70 -0.79 11.69 16 35 H 0.17 7.20 5.77 -2.91 -0.02 7.18 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.35 7.80 -2.39 -0.02 2.33 16 39 H 0.09 2.84 7.31 -2.39 -0.02 2.83 16 40 H 0.07 2.25 7.20 -2.39 -0.02 2.23 16 41 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -73.63 357.83 -0.13 -73.76 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -1.66 Total: 40.24 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 6.94 Total: 29.05 kcal Atomic # 7 Polarization: -145.60 SS G_CDS: -8.03 Total: -153.63 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 1.88 Total: 37.28 kcal Total: -73.63 -0.13 -73.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539717733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.717 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds