Wall clock time and date at job start Tue Mar 31 2020 12:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35771 * 116.99671 * 2 1
4 4 C 1.35595 * 126.07720 * 179.60607 * 3 2 1
5 5 C 1.41072 * 107.79476 * 180.14272 * 4 3 2
6 6 C 1.47681 * 125.98354 * 179.86228 * 5 4 3
7 7 O 1.21579 * 120.00063 * 359.71347 * 6 5 4
8 8 N 1.34776 * 119.99927 * 179.71847 * 6 5 4
9 9 C 1.39395 * 119.99990 * 180.02562 * 8 6 5
10 10 C 1.36146 * 126.26127 * 0.02562 * 9 8 6
11 11 C 1.39729 * 107.85628 * 179.97438 * 10 9 8
12 12 C 1.50703 * 125.77789 * 180.02562 * 11 10 9
13 13 N 1.30834 * 108.44551 * 0.02562 * 11 10 9
14 14 N 1.35802 * 126.26451 * 179.97438 * 9 8 6
15 15 C 1.46501 * 126.09434 * 0.02562 * 14 9 8
16 16 C 1.50697 * 109.47432 * 269.97924 * 15 14 9
17 17 H 1.08006 * 120.00119 * 359.97438 * 16 15 14
18 18 C 1.37875 * 120.00234 * 179.97438 * 16 15 14
19 19 N 1.31516 * 120.00144 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00237 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.47146 * 90.00009 * 20 18 16
22 22 H 1.48506 * 109.47068 * 210.00079 * 20 18 16
23 23 H 1.48498 * 109.47027 * 330.00001 * 20 18 16
24 24 N 1.31879 * 108.03587 * 359.60184 * 5 4 3
25 25 N 1.35844 * 126.08642 * 359.30707 * 3 2 1
26 26 C 1.46496 * 125.94395 * 0.02562 * 25 3 2
27 27 H 1.08995 * 109.47248 * 291.94080 * 1 2 3
28 28 H 1.09004 * 109.46797 * 51.94034 * 1 2 3
29 29 H 1.08994 * 109.46704 * 171.93635 * 1 2 3
30 30 H 1.07990 * 126.10400 * 359.97438 * 4 3 2
31 31 H 0.96996 * 120.00525 * 359.97438 * 8 6 5
32 32 H 1.07994 * 126.07204 * 0.02562 * 10 9 8
33 33 H 1.09003 * 109.47453 * 269.98998 * 12 11 10
34 34 H 1.09004 * 109.46715 * 29.98678 * 12 11 10
35 35 H 1.08991 * 109.47298 * 149.98760 * 12 11 10
36 36 H 1.08999 * 109.46790 * 29.97791 * 15 14 9
37 37 H 1.09004 * 109.47534 * 149.97410 * 15 14 9
38 38 H 0.96991 * 120.00624 * 179.97438 * 19 18 16
39 39 H 1.09001 * 109.47075 * 277.02710 * 26 25 3
40 40 H 1.08995 * 109.47456 * 37.02614 * 26 25 3
41 41 H 1.09004 * 109.47236 * 157.03422 * 26 25 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0454 1.2098 0.0000
4 6 3.3843 1.4238 0.0075
5 6 3.5980 2.8182 0.0078
6 6 4.9107 3.4949 0.0178
7 8 5.9333 2.8375 0.0320
8 7 4.9749 4.8411 0.0112
9 6 6.2139 5.4798 0.0200
10 6 7.4326 4.8730 0.0349
11 6 8.4089 5.8726 0.0388
12 6 9.8991 5.6486 0.0536
13 7 7.8103 7.0359 0.0274
14 7 6.4263 6.8211 0.0145
15 6 5.3920 7.8585 -0.0015
16 6 5.0515 8.2066 -1.4276
17 1 5.5554 7.7054 -2.2409
18 6 4.0967 9.1648 -1.6942
19 7 3.4834 9.7755 -0.7040
20 14 3.6750 9.5968 -3.4620
21 1 2.5723 8.7223 -3.9358
22 1 3.2472 11.0170 -3.5360
23 1 4.8704 9.3946 -4.3196
24 7 2.4205 3.4118 -0.0080
25 7 1.4305 2.4210 -0.0133
26 6 -0.0162 2.6508 -0.0296
27 1 -0.3633 0.3840 0.9532
28 1 -0.3633 0.6336 -0.8092
29 1 -0.3632 -1.0175 -0.1441
30 1 4.1503 0.6626 0.0150
31 1 4.1591 5.3656 -0.0005
32 1 7.6127 3.8082 0.0416
33 1 10.2490 5.6000 1.0848
34 1 10.1307 4.7118 -0.4532
35 1 10.3954 6.4719 -0.4600
36 1 4.5002 7.4903 0.5055
37 1 5.7606 8.7470 0.5113
38 1 2.8120 10.4499 -0.8915
39 1 -0.3842 2.5778 -1.0530
40 1 -0.5103 1.9011 0.5884
41 1 -0.2308 3.6446 0.3635
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000548450799.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:41
Heat of formation + Delta-G solvation = 107.700823 kcal
Electronic energy + Delta-G solvation = -26264.068339 eV
Core-core repulsion = 22377.426712 eV
Total energy + Delta-G solvation = -3886.641627 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.143 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.84923 -40.71070 -39.16572 -38.29338 -34.71298 -33.74331 -33.69221 -32.01217
-30.48314 -29.12860 -28.49873 -27.98680 -26.57659 -25.96742 -23.84626 -22.72310
-21.72315 -20.76728 -19.64751 -19.21649 -18.03881 -17.04604 -16.86902 -16.51492
-16.33149 -15.76371 -15.28259 -15.19695 -14.95995 -14.69668 -14.40465 -14.08579
-13.99006 -13.86702 -13.37874 -13.20598 -12.82374 -12.72529 -12.45296 -12.02183
-11.81883 -11.73917 -11.64034 -11.51549 -11.04084 -10.98071 -10.85021 -10.36331
-10.29695 -10.06202 -9.75928 -9.55066 -9.40254 -8.66903 -8.62549 -7.85671
-7.40281 -6.28074 -4.35903 1.17058 1.87962 1.95507 2.47929 2.74825
2.95322 3.19649 3.26174 3.32542 3.40470 3.73932 3.79286 3.97256
4.29122 4.35705 4.39298 4.65890 4.70034 4.81181 5.05443 5.07365
5.09602 5.21746 5.41169 5.63114 5.69526 5.72398 6.08122 6.16530
6.21836 6.22763 6.33087 6.45011 6.69576 6.90577 7.00053 7.08689
7.16992 7.56544 7.62975 7.68170 7.85384 7.93554 8.29965 8.66691
8.75909 9.31194 10.79228
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.009847 B = 0.004160 C = 0.003077
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2842.865755 B = 6728.405563 C = 9097.989989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.009 3.991
2 O -0.287 6.287
3 C 0.267 3.733
4 C -0.229 4.229
5 C 0.062 3.938
6 C 0.608 3.392
7 O -0.498 6.498
8 N -0.624 5.624
9 C 0.300 3.700
10 C -0.291 4.291
11 C 0.050 3.950
12 C -0.062 4.062
13 N -0.282 5.282
14 N -0.345 5.345
15 C 0.256 3.744
16 C -0.539 4.539
17 H 0.065 0.935
18 C 0.067 3.933
19 N -0.890 5.890
20 Si 0.906 3.094
21 H -0.278 1.278
22 H -0.283 1.283
23 H -0.271 1.271
24 N -0.239 5.239
25 N -0.390 5.390
26 C 0.075 3.925
27 H 0.064 0.936
28 H 0.065 0.935
29 H 0.109 0.891
30 H 0.168 0.832
31 H 0.423 0.577
32 H 0.163 0.837
33 H 0.068 0.932
34 H 0.070 0.930
35 H 0.066 0.934
36 H 0.045 0.955
37 H 0.057 0.943
38 H 0.268 0.732
39 H 0.080 0.920
40 H 0.096 0.904
41 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.277 -18.048 2.822 20.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 O -0.194 6.194
3 C 0.101 3.899
4 C -0.259 4.259
5 C -0.106 4.106
6 C 0.391 3.609
7 O -0.369 6.369
8 N -0.271 5.271
9 C 0.078 3.922
10 C -0.323 4.323
11 C -0.115 4.115
12 C -0.121 4.121
13 N -0.107 5.107
14 N -0.130 5.130
15 C 0.139 3.861
16 C -0.577 4.577
17 H 0.083 0.917
18 C -0.136 4.136
19 N -0.528 5.528
20 Si 0.732 3.268
21 H -0.204 1.204
22 H -0.208 1.208
23 H -0.196 1.196
24 N -0.070 5.070
25 N -0.187 5.187
26 C -0.065 4.065
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.127 0.873
30 H 0.186 0.814
31 H 0.261 0.739
32 H 0.180 0.820
33 H 0.086 0.914
34 H 0.089 0.911
35 H 0.085 0.915
36 H 0.063 0.937
37 H 0.075 0.925
38 H 0.078 0.922
39 H 0.098 0.902
40 H 0.114 0.886
41 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -8.336 -16.227 2.862 18.466
hybrid contribution -1.227 -0.780 -0.991 1.760
sum -9.563 -17.007 1.871 19.601
Atomic orbital electron populations
1.23662 0.77984 1.05315 1.01588 1.86305 1.21606 1.21499 1.89946
1.19542 0.90993 0.78935 1.00476 1.20288 0.92005 0.95247 1.18378
1.21552 0.92192 0.93065 1.03745 1.16625 0.86382 0.80782 0.77103
1.90743 1.33541 1.64735 1.47888 1.42520 1.07601 1.06365 1.70575
1.17972 0.86146 0.84934 1.03145 1.21276 0.88551 1.00955 1.21480
1.22009 0.96666 0.90834 1.01984 1.20021 0.87987 1.02023 1.02040
1.77332 0.86319 1.21649 1.25436 1.49504 1.05436 1.03060 1.55043
1.19636 0.82455 0.85107 0.98925 1.21349 1.22244 1.22804 0.91320
0.91672 1.24920 0.95369 0.95178 0.98162 1.69917 1.25815 1.25768
1.31300 0.86361 0.78843 0.77701 0.83847 1.20401 1.20824 1.19583
1.77871 0.95056 1.10888 1.23198 1.49086 1.06983 1.02859 1.59788
1.22563 0.74393 1.05854 1.03691 0.91804 0.91657 0.87310 0.81410
0.73925 0.81977 0.91369 0.91086 0.91524 0.93741 0.92480 0.92248
0.90151 0.88612 0.87987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.04 9.42 101.05 0.95 0.99 16
2 O -0.29 -2.73 10.57 -19.02 -0.20 -2.93 16
3 C 0.27 3.18 7.78 -16.72 -0.13 3.05 16
4 C -0.23 -3.17 10.59 -39.45 -0.42 -3.58 16
5 C 0.06 0.98 7.09 -82.92 -0.59 0.40 16
6 C 0.61 11.03 7.79 -12.40 -0.10 10.93 16
7 O -0.50 -9.68 14.03 5.30 0.07 -9.60 16
8 N -0.62 -12.23 5.41 -12.25 -0.07 -12.30 16
9 C 0.30 6.66 7.68 -152.74 -1.17 5.49 16
10 C -0.29 -6.14 9.58 -39.78 -0.38 -6.52 16
11 C 0.05 1.03 7.20 -82.46 -0.59 0.44 16
12 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16
13 N -0.28 -6.72 12.56 33.64 0.42 -6.30 16
14 N -0.34 -8.38 3.62 -61.44 -0.22 -8.60 16
15 C 0.26 6.63 6.02 -5.19 -0.03 6.60 16
16 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 16
17 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16
18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16
19 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16
20 Si 0.91 21.19 29.54 -169.99 -5.02 16.16 16
21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
24 N -0.24 -3.64 12.26 33.34 0.41 -3.23 16
25 N -0.39 -4.57 4.03 -68.19 -0.28 -4.84 16
26 C 0.08 0.50 9.59 59.84 0.57 1.08 16
27 H 0.06 0.21 6.45 -51.93 -0.33 -0.12 16
28 H 0.06 0.24 5.92 -51.93 -0.31 -0.07 16
29 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16
31 H 0.42 8.14 7.69 -40.82 -0.31 7.82 16
32 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16
33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16
37 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16
38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
39 H 0.08 0.42 7.58 -51.93 -0.39 0.02 16
40 H 0.10 0.35 4.68 -51.93 -0.24 0.11 16
41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
LS Contribution 353.34 15.07 5.32 5.32
Total: -1.00 -33.99 353.34 -5.54 -39.54
By element:
Atomic # 1 Polarization: 10.88 SS G_CDS: -4.79 Total: 6.09 kcal
Atomic # 6 Polarization: 6.73 SS G_CDS: -1.93 Total: 4.80 kcal
Atomic # 7 Polarization: -60.39 SS G_CDS: 1.00 Total: -59.38 kcal
Atomic # 8 Polarization: -12.41 SS G_CDS: -0.13 Total: -12.54 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -33.99 -5.54 -39.54 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000548450799.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.238 kcal
(2) G-P(sol) polarization free energy of solvation -33.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds