Wall clock time and date at job start Tue Mar 31 2020 12:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35771 * 116.99671 * 2 1
4 4 C 1.35595 * 126.07720 * 179.60607 * 3 2 1
5 5 C 1.41072 * 107.79476 * 180.14272 * 4 3 2
6 6 C 1.47681 * 125.98354 * 179.86228 * 5 4 3
7 7 O 1.21579 * 120.00063 * 359.71347 * 6 5 4
8 8 N 1.34776 * 119.99927 * 179.71847 * 6 5 4
9 9 C 1.39395 * 119.99990 * 180.02562 * 8 6 5
10 10 C 1.36146 * 126.26127 * 0.02562 * 9 8 6
11 11 C 1.39729 * 107.85628 * 179.97438 * 10 9 8
12 12 C 1.50703 * 125.77789 * 180.02562 * 11 10 9
13 13 N 1.30834 * 108.44551 * 0.02562 * 11 10 9
14 14 N 1.35802 * 126.26451 * 179.97438 * 9 8 6
15 15 C 1.46501 * 126.09434 * 0.02562 * 14 9 8
16 16 C 1.50697 * 109.47432 * 269.97924 * 15 14 9
17 17 H 1.08006 * 120.00119 * 359.97438 * 16 15 14
18 18 C 1.37875 * 120.00234 * 179.97438 * 16 15 14
19 19 N 1.31516 * 120.00144 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00237 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.47146 * 90.00009 * 20 18 16
22 22 H 1.48506 * 109.47068 * 210.00079 * 20 18 16
23 23 H 1.48498 * 109.47027 * 330.00001 * 20 18 16
24 24 N 1.31879 * 108.03587 * 359.60184 * 5 4 3
25 25 N 1.35844 * 126.08642 * 359.30707 * 3 2 1
26 26 C 1.46496 * 125.94395 * 0.02562 * 25 3 2
27 27 H 1.08995 * 109.47248 * 291.94080 * 1 2 3
28 28 H 1.09004 * 109.46797 * 51.94034 * 1 2 3
29 29 H 1.08994 * 109.46704 * 171.93635 * 1 2 3
30 30 H 1.07990 * 126.10400 * 359.97438 * 4 3 2
31 31 H 0.96996 * 120.00525 * 359.97438 * 8 6 5
32 32 H 1.07994 * 126.07204 * 0.02562 * 10 9 8
33 33 H 1.09003 * 109.47453 * 269.98998 * 12 11 10
34 34 H 1.09004 * 109.46715 * 29.98678 * 12 11 10
35 35 H 1.08991 * 109.47298 * 149.98760 * 12 11 10
36 36 H 1.08999 * 109.46790 * 29.97791 * 15 14 9
37 37 H 1.09004 * 109.47534 * 149.97410 * 15 14 9
38 38 H 0.96991 * 120.00624 * 179.97438 * 19 18 16
39 39 H 1.09001 * 109.47075 * 277.02710 * 26 25 3
40 40 H 1.08995 * 109.47456 * 37.02614 * 26 25 3
41 41 H 1.09004 * 109.47236 * 157.03422 * 26 25 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0454 1.2098 0.0000
4 6 3.3843 1.4238 0.0075
5 6 3.5980 2.8182 0.0078
6 6 4.9107 3.4949 0.0178
7 8 5.9333 2.8375 0.0320
8 7 4.9749 4.8411 0.0112
9 6 6.2139 5.4798 0.0200
10 6 7.4326 4.8730 0.0349
11 6 8.4089 5.8726 0.0388
12 6 9.8991 5.6486 0.0536
13 7 7.8103 7.0359 0.0274
14 7 6.4263 6.8211 0.0145
15 6 5.3920 7.8585 -0.0015
16 6 5.0515 8.2066 -1.4276
17 1 5.5554 7.7054 -2.2409
18 6 4.0967 9.1648 -1.6942
19 7 3.4834 9.7755 -0.7040
20 14 3.6750 9.5968 -3.4620
21 1 2.5723 8.7223 -3.9358
22 1 3.2472 11.0170 -3.5360
23 1 4.8704 9.3946 -4.3196
24 7 2.4205 3.4118 -0.0080
25 7 1.4305 2.4210 -0.0133
26 6 -0.0162 2.6508 -0.0296
27 1 -0.3633 0.3840 0.9532
28 1 -0.3633 0.6336 -0.8092
29 1 -0.3632 -1.0175 -0.1441
30 1 4.1503 0.6626 0.0150
31 1 4.1591 5.3656 -0.0005
32 1 7.6127 3.8082 0.0416
33 1 10.2490 5.6000 1.0848
34 1 10.1307 4.7118 -0.4532
35 1 10.3954 6.4719 -0.4600
36 1 4.5002 7.4903 0.5055
37 1 5.7606 8.7470 0.5113
38 1 2.8120 10.4499 -0.8915
39 1 -0.3842 2.5778 -1.0530
40 1 -0.5103 1.9011 0.5884
41 1 -0.2308 3.6446 0.3635
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000548450799.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:41
Heat of formation + Delta-G solvation = 83.012130 kcal
Electronic energy + Delta-G solvation = -26265.138921 eV
Core-core repulsion = 22377.426712 eV
Total energy + Delta-G solvation = -3887.712209 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.143 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.86679 -42.31299 -40.53099 -39.21042 -36.33525 -35.65083 -34.56460 -33.83451
-31.47203 -30.72803 -29.95942 -28.92353 -27.80571 -27.26010 -25.17628 -24.56884
-22.63047 -22.18667 -21.26778 -20.54922 -19.14843 -18.87789 -18.25122 -17.78147
-17.55724 -16.75690 -16.69802 -16.41213 -16.27975 -16.05283 -15.73096 -15.45152
-15.28459 -14.68109 -14.55919 -14.43432 -14.08611 -14.04492 -13.93206 -13.57380
-13.39226 -13.11424 -12.91789 -12.71258 -12.46104 -12.34696 -12.31342 -11.99650
-11.86719 -11.71125 -11.60635 -11.18091 -10.76582 -10.31385 -9.64225 -9.58624
-9.10828 -8.36874 -6.54308 -0.04243 0.82940 0.97594 1.17841 1.27558
1.34720 1.36408 1.48220 1.88169 1.91973 2.21802 2.23575 2.34853
2.91928 2.93261 3.64997 3.82456 3.98997 4.03966 4.21509 4.23943
4.28576 4.36529 4.50525 4.59337 4.59750 4.71411 4.72751 4.78834
4.84133 4.93866 4.95450 4.98293 5.16539 5.22115 5.24787 5.50233
5.75880 5.94324 5.99707 6.08942 6.21987 6.31521 6.54926 6.77866
6.99582 7.17289 8.69977
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.009847 B = 0.004160 C = 0.003077
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2842.865755 B = 6728.405563 C = 9097.989989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.007 4.007
2 O -0.294 6.294
3 C 0.284 3.716
4 C -0.248 4.248
5 C 0.043 3.957
6 C 0.611 3.389
7 O -0.514 6.514
8 N -0.627 5.627
9 C 0.294 3.706
10 C -0.298 4.298
11 C 0.060 3.940
12 C -0.060 4.060
13 N -0.324 5.324
14 N -0.368 5.368
15 C 0.273 3.727
16 C -0.557 4.557
17 H 0.047 0.953
18 C 0.027 3.973
19 N -0.914 5.914
20 Si 0.970 3.030
21 H -0.266 1.266
22 H -0.271 1.271
23 H -0.277 1.277
24 N -0.266 5.266
25 N -0.378 5.378
26 C 0.059 3.941
27 H 0.081 0.919
28 H 0.079 0.921
29 H 0.134 0.866
30 H 0.172 0.828
31 H 0.422 0.578
32 H 0.173 0.827
33 H 0.091 0.909
34 H 0.095 0.905
35 H 0.073 0.927
36 H 0.042 0.958
37 H 0.031 0.969
38 H 0.275 0.725
39 H 0.101 0.899
40 H 0.131 0.869
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.813 -19.793 2.109 22.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 O -0.200 6.200
3 C 0.116 3.884
4 C -0.278 4.278
5 C -0.123 4.123
6 C 0.396 3.604
7 O -0.386 6.386
8 N -0.273 5.273
9 C 0.073 3.927
10 C -0.330 4.330
11 C -0.105 4.105
12 C -0.119 4.119
13 N -0.149 5.149
14 N -0.154 5.154
15 C 0.155 3.845
16 C -0.595 4.595
17 H 0.065 0.935
18 C -0.174 4.174
19 N -0.552 5.552
20 Si 0.793 3.207
21 H -0.191 1.191
22 H -0.196 1.196
23 H -0.202 1.202
24 N -0.099 5.099
25 N -0.177 5.177
26 C -0.079 4.079
27 H 0.099 0.901
28 H 0.097 0.903
29 H 0.152 0.848
30 H 0.190 0.810
31 H 0.260 0.740
32 H 0.190 0.810
33 H 0.109 0.891
34 H 0.114 0.886
35 H 0.092 0.908
36 H 0.060 0.940
37 H 0.049 0.951
38 H 0.084 0.916
39 H 0.119 0.881
40 H 0.149 0.851
41 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -9.899 -17.996 2.161 20.653
hybrid contribution -0.878 -0.395 -0.722 1.204
sum -10.778 -18.392 1.439 21.366
Atomic orbital electron populations
1.24116 0.75218 1.07573 1.03124 1.86343 1.24427 1.19785 1.89448
1.19450 0.90616 0.79836 0.98548 1.20386 0.93445 0.94419 1.19584
1.21187 0.91313 0.93782 1.05969 1.16986 0.87402 0.80030 0.75945
1.90700 1.34531 1.64810 1.48549 1.42644 1.06730 1.06940 1.71010
1.18360 0.87565 0.84396 1.02420 1.21517 0.88356 1.01461 1.21663
1.22904 0.99095 0.89561 0.98932 1.20246 0.84070 1.03534 1.04014
1.77288 0.86232 1.23590 1.27800 1.49314 1.05553 1.03416 1.57120
1.19204 0.82745 0.84747 0.97841 1.21416 1.22943 1.23608 0.91565
0.93459 1.25695 0.94836 0.94633 1.02269 1.69992 1.26003 1.25953
1.33203 0.85382 0.78516 0.78086 0.78669 1.19057 1.19571 1.20188
1.77783 0.95567 1.12460 1.24048 1.49422 1.08100 1.02200 1.57973
1.23103 0.71709 1.07177 1.05896 0.90071 0.90290 0.84805 0.81038
0.74031 0.80989 0.89051 0.88607 0.90818 0.94005 0.95142 0.91623
0.88081 0.85095 0.88081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.04 9.42 113.37 1.07 1.03 16
2 O -0.29 -4.81 10.57 -90.98 -0.96 -5.78 16
3 C 0.28 6.30 7.78 83.46 0.65 6.95 16
4 C -0.25 -6.80 10.59 22.35 0.24 -6.56 16
5 C 0.04 1.39 7.09 42.33 0.30 1.69 16
6 C 0.61 22.87 7.79 86.74 0.68 23.54 16
7 O -0.51 -20.36 14.03 -3.96 -0.06 -20.41 16
8 N -0.63 -25.60 5.41 -310.92 -1.68 -27.29 16
9 C 0.29 13.51 7.68 131.18 1.01 14.52 16
10 C -0.30 -12.73 9.58 22.14 0.21 -12.51 16
11 C 0.06 2.49 7.20 43.07 0.31 2.80 16
12 C -0.06 -1.71 10.44 71.24 0.74 -0.97 16
13 N -0.32 -15.88 12.56 -47.47 -0.60 -16.47 16
14 N -0.37 -18.67 3.62 -348.31 -1.26 -19.93 16
15 C 0.27 14.86 6.02 85.63 0.52 15.38 16
16 C -0.56 -31.88 9.39 25.60 0.24 -31.64 16
17 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16
18 C 0.03 1.50 5.46 84.65 0.46 1.97 16
19 N -0.91 -51.59 13.29 21.45 0.28 -51.30 16
20 Si 0.97 43.51 29.54 68.60 2.03 45.54 16
21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
24 N -0.27 -8.09 12.26 -48.44 -0.59 -8.68 16
25 N -0.38 -8.26 4.03 -480.57 -1.94 -10.19 16
26 C 0.06 0.62 9.59 127.77 1.23 1.85 16
27 H 0.08 0.19 6.45 -2.39 -0.02 0.17 16
28 H 0.08 0.25 5.92 -2.38 -0.01 0.24 16
29 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16
30 H 0.17 4.36 8.06 -2.92 -0.02 4.34 16
31 H 0.42 17.13 7.69 -92.71 -0.71 16.42 16
32 H 0.17 6.96 5.83 -2.91 -0.02 6.94 16
33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16
35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
36 H 0.04 2.25 7.52 -2.39 -0.02 2.23 16
37 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.27 14.42 8.31 -92.72 -0.77 13.65 16
39 H 0.10 0.70 7.58 -2.39 -0.02 0.68 16
40 H 0.13 0.44 4.68 -2.39 -0.01 0.43 16
41 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16
Total: -1.00 -75.82 353.34 3.25 -72.57
By element:
Atomic # 1 Polarization: 23.53 SS G_CDS: 0.38 Total: 23.91 kcal
Atomic # 6 Polarization: 10.39 SS G_CDS: 7.65 Total: 18.04 kcal
Atomic # 7 Polarization: -128.08 SS G_CDS: -5.79 Total: -133.87 kcal
Atomic # 8 Polarization: -25.17 SS G_CDS: -1.02 Total: -26.19 kcal
Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal
Total: -75.82 3.25 -72.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000548450799.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.583 kcal
(2) G-P(sol) polarization free energy of solvation -75.819 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds