Wall clock time and date at job start Tue Mar 31 2020 12:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 C 1.50696 * 109.46885 * 119.99954 * 2 1 3 5 5 C 1.38261 * 120.14238 * 299.97893 * 4 2 1 6 6 C 1.37917 * 119.82676 * 180.31364 * 5 4 2 7 7 C 1.38983 * 120.57948 * 359.81946 * 6 5 4 8 8 C 1.37665 * 119.51782 * 359.69528 * 7 6 5 9 9 C 1.37965 * 120.13961 * 120.00163 * 4 2 1 10 10 C 1.50811 * 122.34346 * 181.35989 * 8 7 6 11 11 N 1.46687 * 109.67572 * 348.25167 * 10 8 7 12 12 C 1.34772 * 121.32539 * 224.40952 * 11 10 8 13 13 O 1.21285 * 119.99630 * 180.02562 * 12 11 10 14 14 C 1.50693 * 120.00368 * 0.03005 * 12 11 10 15 15 S 1.81001 * 109.47471 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00177 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99914 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47327 * 89.99823 * 20 18 16 22 22 H 1.48500 * 109.47184 * 209.99950 * 20 18 16 23 23 H 1.48499 * 109.46877 * 329.99903 * 20 18 16 24 24 C 1.47225 * 117.34142 * 44.43335 * 11 10 8 25 25 C 1.50593 * 117.62471 * 179.32958 * 7 6 5 26 26 H 1.09000 * 109.47091 * 299.99983 * 1 2 3 27 27 H 1.09002 * 109.46928 * 59.99862 * 1 2 3 28 28 H 1.08996 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47091 * 240.00017 * 2 1 3 30 30 H 1.09000 * 109.47239 * 60.00108 * 3 2 1 31 31 H 1.08999 * 109.46856 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47447 * 299.99820 * 3 2 1 33 33 H 1.07997 * 120.08904 * 0.28592 * 5 4 2 34 34 H 1.07995 * 119.71015 * 179.84987 * 6 5 4 35 35 H 1.08001 * 119.74227 * 359.77908 * 9 4 2 36 36 H 1.08997 * 109.43753 * 228.19226 * 10 8 7 37 37 H 1.08996 * 109.40323 * 108.29066 * 10 8 7 38 38 H 1.09005 * 109.46730 * 299.99557 * 14 12 11 39 39 H 1.08998 * 109.47427 * 59.99194 * 14 12 11 40 40 H 0.96995 * 120.00270 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.76396 * 176.22548 * 24 11 10 42 42 H 1.08996 * 109.81289 * 55.46846 * 24 11 10 43 43 H 1.08998 * 109.20155 * 280.39895 * 25 7 6 44 44 H 1.09007 * 109.20050 * 39.68468 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7004 -0.2403 2.4876 6 6 2.1690 -0.8917 3.6093 7 6 2.9703 -2.0208 3.4882 8 6 3.2916 -2.4934 2.2358 9 6 2.8257 -1.8324 1.1072 10 6 4.1308 -3.7295 2.0306 11 7 4.7414 -4.1287 3.3032 12 6 6.0368 -4.4937 3.3748 13 8 6.5169 -4.8199 4.4398 14 6 6.8887 -4.4965 2.1318 15 16 8.5670 -5.0287 2.5517 16 6 9.3221 -4.9424 0.9621 17 1 8.7436 -4.6289 0.1058 18 6 10.6606 -5.2771 0.8105 19 7 11.3657 -5.6597 1.8542 20 14 11.4610 -5.1863 -0.8748 21 1 12.0335 -3.8314 -1.0786 22 1 12.5431 -6.1994 -0.9642 23 1 10.4428 -5.4560 -1.9216 24 6 3.8826 -4.1153 4.4989 25 6 3.4576 -2.6705 4.7564 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.0763 0.6349 2.5910 34 1 1.9106 -0.5215 4.5904 35 1 3.0825 -2.2018 0.1254 36 1 4.9143 -3.5192 1.3026 37 1 3.5002 -4.5382 1.6614 38 1 6.4619 -5.1827 1.4004 39 1 6.9212 -3.4914 1.7113 40 1 12.3011 -5.8933 1.7484 41 1 4.4385 -4.4945 5.3563 42 1 3.0016 -4.7339 4.3279 43 1 4.3089 -2.1097 5.1423 44 1 2.6568 -2.6588 5.4958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597963580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:00 Heat of formation + Delta-G solvation = -28.241777 kcal Electronic energy + Delta-G solvation = -23819.793181 eV Core-core repulsion = 20441.257103 eV Total energy + Delta-G solvation = -3378.536077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57902 -39.08629 -36.81388 -34.80674 -33.01422 -32.42649 -31.19514 -29.72653 -28.47872 -27.44504 -25.71840 -25.42166 -24.01841 -22.41806 -21.88950 -20.05303 -18.58697 -17.65551 -16.84660 -16.50782 -15.86858 -15.62891 -15.31274 -14.83371 -14.80186 -14.38613 -14.09290 -14.00054 -13.89018 -13.56916 -13.38898 -13.20822 -12.83222 -12.70632 -12.55677 -12.52094 -12.18860 -11.90717 -11.76999 -11.51076 -11.40940 -11.20908 -11.06101 -11.01911 -10.89679 -10.77487 -10.69729 -9.80838 -9.40937 -9.06518 -8.94859 -8.57065 -8.53064 -8.22612 -6.50005 -6.21375 -3.92022 1.17304 1.21044 2.90196 3.04025 3.22578 3.25853 3.30403 3.51408 3.59445 4.20277 4.32452 4.44431 4.58419 4.72884 4.75534 4.86258 4.89442 5.01226 5.06679 5.13482 5.14727 5.23106 5.26111 5.30923 5.34814 5.46167 5.47899 5.51362 5.57206 5.60937 5.67939 5.77885 5.82686 5.86551 5.87546 5.93119 5.94846 6.03030 6.11269 6.28245 6.42969 6.46915 6.57511 6.84127 7.55362 7.59944 8.35407 8.53666 9.23872 10.86092 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.003064 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.772879 B = 9135.159890 C =10717.244946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.070 4.070 8 C -0.088 4.088 9 C -0.111 4.111 10 C 0.150 3.850 11 N -0.621 5.621 12 C 0.540 3.460 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.113 3.887 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.123 11.254 -1.484 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.079 4.079 5 C -0.132 4.132 6 C -0.136 4.136 7 C -0.070 4.070 8 C -0.089 4.089 9 C -0.129 4.129 10 C 0.026 3.974 11 N -0.357 5.357 12 C 0.328 3.672 13 O -0.389 6.389 14 C -0.302 4.302 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.009 4.009 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.201 10.683 0.178 25.543 hybrid contribution -0.107 0.576 -2.371 2.442 sum -23.308 11.259 -2.193 25.977 Atomic orbital electron populations 1.21850 0.94397 1.01986 1.01809 1.20116 0.95856 0.96083 0.95427 1.21859 1.01484 0.95047 1.01787 1.19724 0.97830 0.95691 0.94686 1.20845 1.00486 0.99918 0.91974 1.21135 0.98298 0.95540 0.98635 1.19494 0.97428 0.95977 0.94147 1.19806 0.98997 0.97204 0.92903 1.20933 0.98325 0.95631 0.98011 1.20494 0.96613 0.93603 0.86680 1.48038 1.10234 1.68688 1.08710 1.20275 0.80547 0.75614 0.90782 1.90692 1.71234 1.46463 1.30488 1.23563 1.03505 1.05067 0.98076 1.85400 0.96738 1.87018 1.14188 1.22854 0.98338 1.52809 0.94289 0.90939 1.24991 0.96150 0.94517 0.97918 1.70018 1.08722 1.42147 1.29412 0.86169 0.78870 0.78073 0.82404 1.20267 1.20750 1.19672 1.21500 0.94285 0.95572 0.89578 1.20840 1.01486 0.96420 0.94736 0.92539 0.92444 0.92531 0.90403 0.92540 0.92363 0.92420 0.86313 0.86205 0.85874 0.88301 0.90239 0.89198 0.89245 0.92180 0.88311 0.91247 0.90025 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.01 37.16 0.33 -0.59 16 2 C -0.06 -0.42 3.10 -91.77 -0.28 -0.71 16 3 C -0.14 -1.02 9.01 37.16 0.33 -0.69 16 4 C -0.08 -0.74 4.77 -104.72 -0.50 -1.24 16 5 C -0.11 -1.05 8.72 -39.69 -0.35 -1.40 16 6 C -0.12 -1.16 9.59 -39.42 -0.38 -1.53 16 7 C -0.07 -0.79 5.76 -104.61 -0.60 -1.39 16 8 C -0.09 -1.01 5.82 -104.56 -0.61 -1.62 16 9 C -0.11 -1.13 9.26 -39.46 -0.37 -1.50 16 10 C 0.15 1.80 6.08 -5.04 -0.03 1.77 16 11 N -0.62 -9.20 2.94 -174.40 -0.51 -9.71 16 12 C 0.54 10.47 7.74 -10.99 -0.09 10.39 16 13 O -0.51 -11.86 15.35 5.55 0.09 -11.77 16 14 C -0.15 -3.13 4.57 36.00 0.16 -2.96 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.11 1.41 6.44 -3.76 -0.02 1.38 16 25 C -0.10 -1.04 5.87 -28.05 -0.16 -1.20 16 26 H 0.06 0.35 7.40 -51.93 -0.38 -0.04 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 30 H 0.06 0.38 7.41 -51.93 -0.38 0.00 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.12 0.88 7.13 -52.49 -0.37 0.51 16 34 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 35 H 0.12 1.07 7.93 -52.49 -0.42 0.66 16 36 H 0.10 1.19 6.19 -51.93 -0.32 0.87 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.70 8.11 -51.91 -0.42 1.28 16 39 H 0.09 1.73 7.58 -51.92 -0.39 1.34 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.10 1.35 7.07 -51.93 -0.37 0.99 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.69 8.10 -51.92 -0.42 0.27 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -33.99 369.65 -10.53 -44.53 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.82 Total: -1.39 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.36 Total: -14.25 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.22 Total: -35.23 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.99 -10.53 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597963580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds