Wall clock time and date at job start Tue Mar 31 2020 12:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.45808 * 2 1 4 4 C 1.53037 * 109.46403 * 240.02648 * 2 1 3 5 5 C 1.53193 * 109.31582 * 178.60315 * 4 2 1 6 6 N 1.46919 * 108.76461 * 54.65354 * 5 4 2 7 7 C 1.34776 * 120.63140 * 126.36626 * 6 5 4 8 8 O 1.21615 * 120.00330 * 176.07576 * 7 6 5 9 9 C 1.47432 * 119.99933 * 356.07435 * 7 6 5 10 10 C 1.39675 * 120.21255 * 54.06355 * 9 7 6 11 11 C 1.37809 * 119.93786 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.37830 * 0.02989 * 11 10 9 13 13 C 1.37916 * 120.44249 * 359.96954 * 12 11 10 14 14 C 1.39109 * 120.04525 * 359.74661 * 13 12 11 15 15 S 1.76200 * 120.18880 * 180.25289 * 14 13 12 16 16 C 1.76201 * 99.99884 * 7.79328 * 15 14 13 17 17 H 1.08001 * 119.99987 * 355.59792 * 16 15 14 18 18 C 1.38811 * 119.99922 * 175.59658 * 16 15 14 19 19 N 1.31549 * 119.99880 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46880 * 90.00185 * 20 18 16 22 22 H 1.48495 * 109.47452 * 210.00154 * 20 18 16 23 23 H 1.48502 * 109.47123 * 330.00547 * 20 18 16 24 24 C 1.46928 * 118.74084 * 306.38198 * 6 5 4 25 25 C 1.53040 * 109.46025 * 119.96710 * 2 1 3 26 26 H 1.08998 * 109.46633 * 60.00041 * 1 2 3 27 27 H 1.08993 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47241 * 300.00266 * 1 2 3 29 29 H 1.08997 * 109.47214 * 60.00027 * 3 2 1 30 30 H 1.09001 * 109.46624 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46782 * 299.99454 * 3 2 1 32 32 H 1.09000 * 109.49496 * 298.56611 * 4 2 1 33 33 H 1.09004 * 109.49860 * 58.65817 * 4 2 1 34 34 H 1.08999 * 109.59615 * 294.86560 * 5 4 2 35 35 H 1.08999 * 109.70095 * 174.50205 * 5 4 2 36 36 H 1.08001 * 120.03354 * 359.96240 * 10 9 7 37 37 H 1.07994 * 119.80923 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.78076 * 179.97438 * 12 11 10 39 39 H 1.08002 * 119.97445 * 180.02562 * 13 12 11 40 40 H 0.97002 * 119.99813 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58782 * 293.82927 * 24 6 5 42 42 H 1.08994 * 109.70610 * 173.47069 * 24 6 5 43 43 H 1.08994 * 109.50183 * 301.33876 * 25 2 1 44 44 H 1.09001 * 109.49742 * 61.40464 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4427 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5715 -0.6884 -1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9615 -2.2577 -0.0001 8 8 5.4187 -2.6652 1.0506 9 6 5.3847 -2.8675 -1.2739 10 6 5.8914 -2.0687 -2.3015 11 6 6.2858 -2.6447 -3.4897 12 6 6.1823 -4.0152 -3.6729 13 6 5.6842 -4.8188 -2.6687 14 6 5.2863 -4.2570 -1.4599 15 16 4.6557 -5.2809 -0.1721 16 6 4.9749 -6.8709 -0.8612 17 1 5.3769 -6.9557 -1.8601 18 6 4.7099 -8.0144 -0.1203 19 7 4.2199 -7.9110 1.0962 20 14 5.0477 -9.6999 -0.8511 21 1 6.4369 -10.1113 -0.5254 22 1 4.0935 -10.6860 -0.2834 23 1 4.8814 -9.6425 -2.3257 24 6 3.5714 -0.6886 1.2643 25 6 2.0399 -0.7208 1.2501 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6763 1.9564 0.8900 30 1 3.1297 1.4428 0.0005 31 1 1.6763 1.9564 -0.8901 32 1 1.6979 -1.7558 -1.2380 33 1 1.6573 -0.2210 -2.1398 34 1 3.9144 0.3411 -1.3672 35 1 3.9438 -1.2828 -2.0986 36 1 5.9738 -1.0005 -2.1652 37 1 6.6769 -2.0250 -4.2830 38 1 6.4938 -4.4565 -4.6081 39 1 5.6073 -5.8855 -2.8194 40 1 4.0351 -8.7101 1.6140 41 1 3.9142 0.3409 1.3674 42 1 3.9416 -1.2825 2.0999 43 1 1.6573 -0.2209 2.1398 44 1 1.6974 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726957591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:42 Heat of formation + Delta-G solvation = -17.570985 kcal Electronic energy + Delta-G solvation = -25036.334630 eV Core-core repulsion = 21658.261273 eV Total energy + Delta-G solvation = -3378.073357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32189 -38.45931 -37.25986 -34.19785 -32.78036 -31.56492 -30.38934 -30.22166 -28.20565 -27.43856 -25.88120 -24.07785 -23.36666 -22.13972 -21.96292 -19.92399 -18.44423 -17.66830 -16.84154 -16.17191 -15.75306 -15.19690 -15.06105 -14.88997 -14.42751 -14.34016 -14.22008 -14.13554 -13.56132 -13.07792 -12.97041 -12.82620 -12.56769 -12.25044 -11.99021 -11.87181 -11.82058 -11.65512 -11.63481 -11.28151 -11.20982 -11.08935 -11.02113 -10.77688 -10.39627 -10.33976 -10.28516 -9.82191 -9.56345 -9.38063 -8.78148 -8.51554 -8.33249 -8.22124 -6.56329 -6.49395 -4.20336 1.66142 1.97125 3.07316 3.11814 3.17989 3.19165 3.35545 3.42722 4.01436 4.32235 4.60284 4.67592 4.73231 4.92633 5.01574 5.09348 5.15175 5.24158 5.35990 5.37752 5.39605 5.52504 5.56901 5.60400 5.64665 5.69064 5.76961 5.82291 5.86861 5.91506 5.91861 6.05376 6.11317 6.15790 6.21191 6.23565 6.34600 6.43760 6.55588 6.82461 6.86124 7.00337 7.10913 7.42147 7.56086 7.76293 8.13716 8.69286 8.97113 10.56306 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.004270 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.113090 B = 6555.217871 C = 7513.279389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.125 4.125 5 C 0.101 3.899 6 N -0.610 5.610 7 C 0.569 3.431 8 O -0.517 6.517 9 C -0.158 4.158 10 C -0.071 4.071 11 C -0.179 4.179 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.048 4.048 15 S 0.099 5.901 16 C -0.567 4.567 17 H 0.094 0.906 18 C 0.080 3.920 19 N -0.859 5.859 20 Si 0.924 3.076 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.113 3.887 25 C -0.124 4.124 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.275 0.725 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 16.415 -5.862 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.163 4.163 5 C -0.022 4.022 6 N -0.345 5.345 7 C 0.358 3.642 8 O -0.392 6.392 9 C -0.172 4.172 10 C -0.091 4.091 11 C -0.203 4.203 12 C -0.103 4.103 13 C -0.176 4.176 14 C -0.167 4.167 15 S 0.360 5.640 16 C -0.713 4.713 17 H 0.112 0.888 18 C -0.131 4.131 19 N -0.492 5.492 20 Si 0.749 3.251 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.010 4.010 25 C -0.163 4.163 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.097 16.096 -3.772 17.300 hybrid contribution 0.710 -1.296 -1.701 2.253 sum -4.387 14.800 -5.473 16.378 Atomic orbital electron populations 1.21856 0.94565 1.01908 1.01414 1.20522 0.95351 0.95281 0.95398 1.21977 1.01461 0.95285 1.01466 1.21991 0.95463 1.01482 0.97381 1.21940 0.94106 0.98852 0.87300 1.47973 1.43873 1.35973 1.06719 1.18351 0.78352 0.78252 0.89240 1.90802 1.54673 1.60961 1.32798 1.19148 1.10350 0.92840 0.94814 1.20884 0.97571 0.98086 0.92551 1.20661 1.06865 0.94994 0.97769 1.21072 0.97382 0.93701 0.98106 1.21417 1.02453 1.01026 0.92740 1.22844 0.97996 0.95781 1.00047 1.83956 1.65003 0.97455 1.17551 1.23528 1.51121 0.91554 1.05142 0.88828 1.25112 0.93505 0.99992 0.94464 1.69975 1.39256 1.30797 1.09175 0.86070 0.78627 0.80942 0.79469 1.19806 1.20468 1.19187 1.21530 0.93495 0.98531 0.87401 1.21988 0.95468 1.01453 0.97348 0.92786 0.92525 0.92796 0.92813 0.92135 0.92797 0.91061 0.91032 0.91744 0.88505 0.86760 0.86916 0.86934 0.84363 0.91545 0.91903 0.89000 0.91043 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.47 37.16 0.31 -0.95 16 2 C -0.07 -0.65 0.77 -154.47 -0.12 -0.77 16 3 C -0.14 -1.23 7.71 37.16 0.29 -0.94 16 4 C -0.12 -1.39 4.90 -26.61 -0.13 -1.52 16 5 C 0.10 1.24 5.06 -3.71 -0.02 1.22 16 6 N -0.61 -9.52 2.97 -174.04 -0.52 -10.03 16 7 C 0.57 11.45 6.57 -12.52 -0.08 11.37 16 8 O -0.52 -12.40 15.45 5.26 0.08 -12.32 16 9 C -0.16 -3.15 4.90 -104.75 -0.51 -3.67 16 10 C -0.07 -1.15 7.42 -39.20 -0.29 -1.44 16 11 C -0.18 -2.72 10.02 -39.58 -0.40 -3.12 16 12 C -0.08 -1.37 10.03 -39.54 -0.40 -1.77 16 13 C -0.15 -3.12 9.25 -39.38 -0.36 -3.49 16 14 C -0.05 -1.10 6.14 -38.39 -0.24 -1.34 16 15 S 0.10 2.66 19.90 -107.50 -2.14 0.52 16 16 C -0.57 -15.59 9.08 30.94 0.28 -15.31 16 17 H 0.09 2.43 4.85 -52.49 -0.25 2.18 16 18 C 0.08 2.19 5.49 -17.46 -0.10 2.10 16 19 N -0.86 -24.76 13.22 55.49 0.73 -24.03 16 20 Si 0.92 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C 0.11 1.54 5.95 -3.71 -0.02 1.52 16 25 C -0.12 -1.46 4.91 -26.61 -0.13 -1.59 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 4.98 -51.93 -0.26 0.28 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.66 6.69 -51.93 -0.35 0.31 16 35 H 0.10 1.28 4.73 -51.93 -0.25 1.04 16 36 H 0.11 1.52 7.36 -52.49 -0.39 1.14 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.14 2.98 4.98 -52.49 -0.26 2.72 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.06 0.73 6.69 -51.93 -0.35 0.38 16 42 H 0.09 1.46 7.03 -51.93 -0.37 1.10 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.64 354.10 -9.70 -41.34 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.25 Total: 3.26 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.91 Total: -19.68 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.22 Total: -34.07 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.14 Total: 0.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.64 -9.70 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726957591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.767 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds