Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 C 1.53005 * 109.47101 * 119.99307 * 2 1 3 5 5 N 1.46501 * 109.46970 * 65.00227 * 4 2 1 6 6 C 1.46500 * 120.00295 * 270.00145 * 5 4 2 7 7 C 1.50699 * 109.46952 * 269.99981 * 6 5 4 8 8 H 1.08002 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99973 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47603 * 89.99877 * 11 9 7 13 13 H 1.48504 * 109.47087 * 210.00084 * 11 9 7 14 14 H 1.48503 * 109.46686 * 329.99407 * 11 9 7 15 15 C 1.34783 * 119.99881 * 89.99673 * 5 4 2 16 16 O 1.21798 * 119.99928 * 179.97438 * 15 5 4 17 17 C 1.41314 * 119.99944 * 0.02562 * 15 5 4 18 18 C 1.35085 * 119.99729 * 180.02562 * 17 15 5 19 19 S 1.76194 * 120.00302 * 359.97438 * 18 17 15 20 20 C 1.76204 * 100.00315 * 185.19789 * 19 18 17 21 21 C 1.38943 * 120.07085 * 85.91636 * 20 19 18 22 22 C 1.38087 * 119.92088 * 179.97438 * 21 20 19 23 23 C 1.38297 * 120.07562 * 0.02562 * 22 21 20 24 24 C 1.38301 * 120.15781 * 0.27269 * 23 22 21 25 25 C 1.38097 * 120.06991 * 359.45066 * 24 23 22 26 26 H 1.08995 * 109.46688 * 60.00680 * 1 2 3 27 27 H 1.09004 * 109.46656 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47357 * 300.00255 * 1 2 3 29 29 H 1.08999 * 109.47676 * 239.99674 * 2 1 3 30 30 H 1.08997 * 109.47727 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47101 * 299.99695 * 3 2 1 32 32 H 1.09001 * 109.47644 * 59.99337 * 3 2 1 33 33 H 1.08998 * 109.47124 * 305.00414 * 4 2 1 34 34 H 1.09001 * 109.47144 * 184.99828 * 4 2 1 35 35 H 1.09002 * 109.46576 * 30.00005 * 6 5 4 36 36 H 1.08997 * 109.47034 * 149.99872 * 6 5 4 37 37 H 0.97006 * 120.00226 * 180.02562 * 10 9 7 38 38 H 1.07998 * 120.00231 * 359.97438 * 17 15 5 39 39 H 1.08004 * 119.99948 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.03857 * 359.95635 * 21 20 19 41 41 H 1.07996 * 119.96207 * 180.02562 * 22 21 20 42 42 H 1.08005 * 119.92385 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.96708 * 179.70189 * 24 23 22 44 44 H 1.08000 * 120.03403 * 180.26871 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 -2.1327 1.1908 6 6 0.3746 -2.5659 1.7615 7 6 0.5716 -2.9406 3.2077 8 1 1.5507 -2.8635 3.6571 9 6 -0.4983 -3.3810 3.9577 10 7 -1.6908 -3.4735 3.4110 11 14 -0.2542 -3.8449 5.7506 12 1 -0.4667 -2.6489 6.6048 13 1 -1.2288 -4.9007 6.1259 14 1 1.1270 -4.3541 5.9465 15 6 2.4716 -3.0330 0.6118 16 8 2.1496 -4.2066 0.5635 17 6 3.7044 -2.6153 0.0618 18 6 4.5251 -3.5175 -0.5190 19 16 4.0588 -5.2151 -0.5901 20 6 5.5246 -5.9065 -1.2817 21 6 6.5806 -6.2692 -0.4548 22 6 7.7276 -6.8112 -1.0001 23 6 7.8262 -6.9927 -2.3675 24 6 6.7794 -6.6271 -3.1942 25 6 5.6271 -6.0897 -2.6551 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0044 -3.4297 1.2094 37 1 -2.4436 -3.7830 3.9387 38 1 3.9901 -1.5747 0.1049 39 1 5.4672 -3.1982 -0.9398 40 1 6.5045 -6.1271 0.6132 41 1 8.5487 -7.0937 -0.3579 42 1 8.7243 -7.4172 -2.7914 43 1 6.8615 -6.7657 -4.2620 44 1 4.8084 -5.8085 -3.3007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751382514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = 8.088222 kcal Electronic energy + Delta-G solvation = -23852.025253 eV Core-core repulsion = 20475.064562 eV Total energy + Delta-G solvation = -3376.960690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.41838 -38.98025 -36.44051 -33.62136 -32.60362 -32.11163 -31.10272 -31.03468 -27.88775 -26.79488 -25.55650 -24.10554 -22.86801 -22.69536 -21.37804 -20.13593 -18.54431 -17.54561 -17.05704 -16.44714 -16.08505 -15.50766 -15.09849 -14.61443 -14.49545 -14.43583 -14.01913 -13.91047 -13.59469 -13.35633 -13.19493 -12.84376 -12.53903 -12.24973 -12.10056 -12.02199 -11.58203 -11.37566 -11.33482 -11.17806 -11.00162 -10.88755 -10.69262 -10.52718 -10.40954 -10.24391 -10.19445 -9.98159 -9.52114 -9.11509 -9.10408 -8.45010 -8.37080 -7.74511 -7.12776 -5.98704 -4.02882 0.86552 1.22981 1.45470 2.03487 2.79538 3.33315 3.40169 3.44964 3.63276 4.03062 4.12452 4.50496 4.72993 4.78895 4.90572 5.05885 5.14110 5.22171 5.28773 5.35008 5.35082 5.40494 5.56766 5.60173 5.77675 5.84003 5.87275 5.92943 6.08673 6.13620 6.17706 6.18740 6.21691 6.26076 6.27378 6.28419 6.35409 6.62087 6.74158 6.75103 7.18533 7.51331 7.62220 7.97804 8.30546 8.48804 8.94761 9.12374 9.61696 11.08820 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003568 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.338992 B = 7845.614633 C = 9534.238193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.587 5.587 6 C 0.242 3.758 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.528 3.472 16 O -0.521 6.521 17 C -0.206 4.206 18 C -0.121 4.121 19 S 0.129 5.871 20 C -0.202 4.202 21 C -0.069 4.069 22 C -0.133 4.133 23 C -0.102 4.102 24 C -0.134 4.134 25 C -0.071 4.071 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.294 2.483 -12.013 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.317 5.317 6 C 0.123 3.877 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.319 3.681 16 O -0.404 6.404 17 C -0.242 4.242 18 C -0.256 4.256 19 S 0.378 5.622 20 C -0.311 4.311 21 C -0.089 4.089 22 C -0.153 4.153 23 C -0.120 4.120 24 C -0.154 4.154 25 C -0.091 4.091 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.908 1.151 -11.685 18.977 hybrid contribution 1.455 0.584 0.629 1.689 sum 16.363 1.734 -11.056 19.824 Atomic orbital electron populations 1.21924 0.94648 1.03097 1.00890 1.21595 0.97104 0.95713 0.98963 1.21782 1.00470 0.96119 1.01740 1.21572 0.99086 0.82313 0.97900 1.48032 1.21656 1.06135 1.55837 1.19393 0.78701 0.96366 0.93214 1.21459 0.95027 1.44215 0.95537 0.92552 1.24910 0.95079 0.95487 0.98571 1.69930 0.99777 1.47220 1.36513 0.86537 0.78072 0.78151 0.84909 1.20749 1.21141 1.19900 1.16970 0.84982 0.86140 0.80025 1.90573 1.73648 1.16829 1.59315 1.21822 0.97119 1.00201 1.05057 1.26132 1.01448 0.98737 0.99285 1.86924 1.07928 0.96693 1.70684 1.23660 1.03566 1.06877 0.96974 1.21630 0.92123 0.95281 0.99910 1.21242 0.98194 1.00514 0.95355 1.21282 0.98552 0.98331 0.93845 1.21236 0.93999 1.00266 0.99889 1.21605 0.97296 0.96107 0.94076 0.93688 0.91224 0.92561 0.91433 0.92993 0.92886 0.92515 0.90016 0.91565 0.94226 0.93973 0.92815 0.84762 0.84727 0.85255 0.85831 0.86040 0.85863 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.59 3.13 -90.62 -0.28 -1.87 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.12 1.88 4.58 -4.04 -0.02 1.86 16 5 N -0.59 -12.36 2.28 -178.57 -0.41 -12.77 16 6 C 0.24 6.25 4.23 -5.19 -0.02 6.23 16 7 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 15 C 0.53 11.10 7.42 -15.09 -0.11 10.98 16 16 O -0.52 -12.79 12.91 5.10 0.07 -12.73 16 17 C -0.21 -3.31 9.10 -39.53 -0.36 -3.67 16 18 C -0.12 -1.78 10.05 29.61 0.30 -1.48 16 19 S 0.13 2.13 18.58 -107.50 -2.00 0.14 16 20 C -0.20 -2.70 5.45 -39.06 -0.21 -2.91 16 21 C -0.07 -0.84 9.79 -39.38 -0.39 -1.23 16 22 C -0.13 -1.34 10.04 -39.62 -0.40 -1.74 16 23 C -0.10 -0.94 10.04 -39.54 -0.40 -1.34 16 24 C -0.13 -1.31 10.04 -39.61 -0.40 -1.71 16 25 C -0.07 -0.82 9.79 -39.38 -0.39 -1.21 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.07 0.92 6.08 -51.93 -0.32 0.60 16 35 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.13 1.75 6.08 -52.49 -0.32 1.43 16 39 H 0.13 1.58 8.02 -52.48 -0.42 1.16 16 40 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -32.61 376.60 -10.07 -42.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.67 Total: 0.64 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.45 Total: -14.79 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.33 Total: -38.65 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.00 Total: 0.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.61 -10.07 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751382514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.772 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds