Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 C 1.53005 * 109.47101 * 119.99307 * 2 1 3 5 5 N 1.46501 * 109.46970 * 65.00227 * 4 2 1 6 6 C 1.46500 * 120.00295 * 270.00145 * 5 4 2 7 7 C 1.50699 * 109.46952 * 269.99981 * 6 5 4 8 8 H 1.08002 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99973 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47603 * 89.99877 * 11 9 7 13 13 H 1.48504 * 109.47087 * 210.00084 * 11 9 7 14 14 H 1.48503 * 109.46686 * 329.99407 * 11 9 7 15 15 C 1.34783 * 119.99881 * 89.99673 * 5 4 2 16 16 O 1.21798 * 119.99928 * 179.97438 * 15 5 4 17 17 C 1.41314 * 119.99944 * 0.02562 * 15 5 4 18 18 C 1.35085 * 119.99729 * 180.02562 * 17 15 5 19 19 S 1.76194 * 120.00302 * 359.97438 * 18 17 15 20 20 C 1.76204 * 100.00315 * 185.19789 * 19 18 17 21 21 C 1.38943 * 120.07085 * 85.91636 * 20 19 18 22 22 C 1.38087 * 119.92088 * 179.97438 * 21 20 19 23 23 C 1.38297 * 120.07562 * 0.02562 * 22 21 20 24 24 C 1.38301 * 120.15781 * 0.27269 * 23 22 21 25 25 C 1.38097 * 120.06991 * 359.45066 * 24 23 22 26 26 H 1.08995 * 109.46688 * 60.00680 * 1 2 3 27 27 H 1.09004 * 109.46656 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47357 * 300.00255 * 1 2 3 29 29 H 1.08999 * 109.47676 * 239.99674 * 2 1 3 30 30 H 1.08997 * 109.47727 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47101 * 299.99695 * 3 2 1 32 32 H 1.09001 * 109.47644 * 59.99337 * 3 2 1 33 33 H 1.08998 * 109.47124 * 305.00414 * 4 2 1 34 34 H 1.09001 * 109.47144 * 184.99828 * 4 2 1 35 35 H 1.09002 * 109.46576 * 30.00005 * 6 5 4 36 36 H 1.08997 * 109.47034 * 149.99872 * 6 5 4 37 37 H 0.97006 * 120.00226 * 180.02562 * 10 9 7 38 38 H 1.07998 * 120.00231 * 359.97438 * 17 15 5 39 39 H 1.08004 * 119.99948 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.03857 * 359.95635 * 21 20 19 41 41 H 1.07996 * 119.96207 * 180.02562 * 22 21 20 42 42 H 1.08005 * 119.92385 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.96708 * 179.70189 * 24 23 22 44 44 H 1.08000 * 120.03403 * 180.26871 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6525 -2.1327 1.1908 6 6 0.3746 -2.5659 1.7615 7 6 0.5716 -2.9406 3.2077 8 1 1.5507 -2.8635 3.6571 9 6 -0.4983 -3.3810 3.9577 10 7 -1.6908 -3.4735 3.4110 11 14 -0.2542 -3.8449 5.7506 12 1 -0.4667 -2.6489 6.6048 13 1 -1.2288 -4.9007 6.1259 14 1 1.1270 -4.3541 5.9465 15 6 2.4716 -3.0330 0.6118 16 8 2.1496 -4.2066 0.5635 17 6 3.7044 -2.6153 0.0618 18 6 4.5251 -3.5175 -0.5190 19 16 4.0588 -5.2151 -0.5901 20 6 5.5246 -5.9065 -1.2817 21 6 6.5806 -6.2692 -0.4548 22 6 7.7276 -6.8112 -1.0001 23 6 7.8262 -6.9927 -2.3675 24 6 6.7794 -6.6271 -3.1942 25 6 5.6271 -6.0897 -2.6551 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0044 -3.4297 1.2094 37 1 -2.4436 -3.7830 3.9387 38 1 3.9901 -1.5747 0.1049 39 1 5.4672 -3.1982 -0.9398 40 1 6.5045 -6.1271 0.6132 41 1 8.5487 -7.0937 -0.3579 42 1 8.7243 -7.4172 -2.7914 43 1 6.8615 -6.7657 -4.2620 44 1 4.8084 -5.8085 -3.3007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751382514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = -9.113798 kcal Electronic energy + Delta-G solvation = -23852.771188 eV Core-core repulsion = 20475.064562 eV Total energy + Delta-G solvation = -3377.706626 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98994 -39.80912 -37.85764 -35.41958 -34.12668 -33.79085 -31.91239 -31.88122 -29.79282 -27.95428 -26.94950 -25.86418 -23.93108 -23.50525 -22.90938 -21.33223 -19.92934 -18.71832 -18.51944 -18.39544 -17.41501 -16.71458 -16.30452 -16.07287 -15.90390 -15.84012 -15.25381 -15.01019 -14.71515 -14.52535 -14.37138 -14.18565 -13.89878 -13.63404 -13.40285 -13.40217 -12.99459 -12.94982 -12.66747 -12.55283 -12.31919 -12.18626 -12.15648 -12.08537 -11.80735 -11.67830 -11.55412 -11.48528 -11.38350 -10.59370 -10.25014 -9.93248 -9.69554 -9.41150 -8.54096 -8.16532 -6.33054 -0.03421 0.16744 0.41524 0.91291 1.35647 1.38900 1.49216 1.68625 2.34091 2.54056 2.60379 2.79321 3.09994 3.85132 3.94648 3.97591 4.07922 4.08381 4.19975 4.25733 4.40101 4.52263 4.54475 4.68147 4.71078 4.78948 4.79546 4.88750 4.92467 4.99836 5.06680 5.08895 5.12732 5.18838 5.31203 5.33333 5.40959 5.41327 5.48357 5.50246 5.52819 5.63720 5.93976 5.97027 6.13146 6.74605 6.87181 7.31566 7.52830 8.87455 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003568 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.338992 B = 7845.614633 C = 9534.238193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.264 3.736 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.274 1.274 15 C 0.516 3.484 16 O -0.572 6.572 17 C -0.219 4.219 18 C -0.089 4.089 19 S 0.053 5.947 20 C -0.208 4.208 21 C -0.087 4.087 22 C -0.132 4.132 23 C -0.095 4.095 24 C -0.131 4.131 25 C -0.084 4.084 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.033 0.967 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.001 3.501 -12.828 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.323 5.323 6 C 0.143 3.857 7 C -0.579 4.579 8 H 0.068 0.932 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.199 1.199 15 C 0.309 3.691 16 O -0.458 6.458 17 C -0.254 4.254 18 C -0.224 4.224 19 S 0.303 5.697 20 C -0.318 4.318 21 C -0.107 4.107 22 C -0.151 4.151 23 C -0.113 4.113 24 C -0.150 4.150 25 C -0.104 4.104 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.009 0.991 37 H 0.075 0.925 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.142 0.858 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.626 2.217 -12.506 22.544 hybrid contribution 0.393 0.141 0.757 0.864 sum 19.019 2.358 -11.749 22.479 Atomic orbital electron populations 1.21890 0.96346 1.00579 1.01631 1.21530 0.95578 0.97799 0.97629 1.21726 1.01826 0.93290 1.02460 1.21869 1.01020 0.79564 0.98710 1.48013 1.20130 1.08415 1.55777 1.18778 0.81110 0.94153 0.91702 1.21749 0.94795 1.44535 0.96839 0.93232 1.25812 0.94724 0.95234 1.03273 1.70055 1.00596 1.47855 1.38303 0.85471 0.77794 0.78413 0.79468 1.18798 1.20660 1.19928 1.17776 0.86290 0.85438 0.79569 1.90584 1.75244 1.18901 1.61097 1.21748 0.95138 1.02206 1.06306 1.26406 1.02007 0.96859 0.97155 1.87233 1.11490 0.99624 1.71333 1.23290 1.02043 1.08616 0.97804 1.21690 0.92847 0.96433 0.99731 1.21547 0.97833 0.99409 0.96357 1.21726 0.99407 0.96813 0.93372 1.21574 0.93037 0.98910 1.01517 1.21716 0.98474 0.96890 0.93350 0.91507 0.95312 0.93214 0.91193 0.90775 0.91539 0.92468 0.91298 0.88290 0.94867 0.99067 0.92537 0.81038 0.80983 0.85819 0.83340 0.82634 0.83066 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 8.18 71.98 0.59 -4.06 16 2 C -0.11 -2.83 3.13 -10.79 -0.03 -2.86 16 3 C -0.14 -2.53 9.19 71.98 0.66 -1.87 16 4 C 0.11 3.57 4.58 86.38 0.40 3.97 16 5 N -0.59 -26.15 2.28 -837.04 -1.91 -28.06 16 6 C 0.26 14.61 4.23 85.63 0.36 14.97 16 7 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 11 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.52 22.59 7.42 85.00 0.63 23.23 16 16 O -0.57 -30.17 12.91 -4.66 -0.06 -30.23 16 17 C -0.22 -6.86 9.10 22.30 0.20 -6.66 16 18 C -0.09 -2.54 10.05 67.09 0.67 -1.86 16 19 S 0.05 1.83 18.58 -56.49 -1.05 0.78 16 20 C -0.21 -5.48 5.45 22.61 0.12 -5.36 16 21 C -0.09 -2.02 9.79 22.40 0.22 -1.80 16 22 C -0.13 -2.26 10.04 22.25 0.22 -2.04 16 23 C -0.10 -1.38 10.04 22.30 0.22 -1.16 16 24 C -0.13 -2.14 10.04 22.25 0.22 -1.91 16 25 C -0.08 -1.86 9.79 22.40 0.22 -1.64 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.12 5.89 -2.39 -0.01 1.11 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.10 2.52 6.08 -2.39 -0.01 2.50 16 35 H 0.03 1.85 5.98 -2.39 -0.01 1.84 16 36 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 37 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 38 H 0.17 3.94 6.08 -2.91 -0.02 3.92 16 39 H 0.17 3.52 8.02 -2.91 -0.02 3.50 16 40 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -77.35 376.60 5.68 -71.66 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.97 Total: 14.75 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 5.42 Total: -19.98 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.62 Total: -85.24 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.05 Total: 0.78 kcal Total: -77.35 5.68 -71.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751382514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.549 kcal (2) G-P(sol) polarization free energy of solvation -77.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds