Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.38524 * 2 1 4 4 N 1.46497 * 109.46906 * 302.23137 * 3 2 1 5 5 C 1.34782 * 119.99710 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99740 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.99971 * 179.97438 * 5 4 3 8 8 C 1.50699 * 109.47311 * 179.97438 * 7 5 4 9 9 C 1.37635 * 120.12930 * 265.00456 * 8 7 5 10 10 C 1.38617 * 120.24729 * 180.02562 * 9 8 7 11 11 C 1.38661 * 120.50040 * 359.96861 * 10 9 8 12 12 C 1.37591 * 120.25128 * 0.03172 * 11 10 9 13 13 C 1.40699 * 120.12520 * 84.72704 * 8 7 5 14 14 C 1.41402 * 120.24497 * 359.97438 * 13 8 7 15 15 H 1.08001 * 119.99516 * 333.90259 * 14 13 8 16 16 C 1.39945 * 120.00021 * 153.90040 * 14 13 8 17 17 N 1.30823 * 119.99838 * 343.71147 * 16 14 13 18 18 Si 1.86800 * 119.99864 * 163.70551 * 16 14 13 19 19 H 1.48496 * 109.47091 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47024 * 120.00352 * 18 16 14 21 21 H 1.48497 * 109.47273 * 240.00220 * 18 16 14 22 22 C 1.53711 * 110.34414 * 122.22998 * 2 1 3 23 23 C 1.52937 * 112.48989 * 121.69907 * 22 2 1 24 24 C 1.55151 * 108.96170 * 329.89814 * 23 22 2 25 25 S 1.83396 * 110.34109 * 237.77417 * 2 1 3 26 26 H 1.09001 * 109.46856 * 297.76683 * 1 2 3 27 27 H 1.08996 * 109.47221 * 57.77498 * 1 2 3 28 28 H 1.09008 * 109.46711 * 177.77330 * 1 2 3 29 29 H 1.08999 * 109.46545 * 62.23234 * 3 2 1 30 30 H 1.09003 * 109.46841 * 182.22817 * 3 2 1 31 31 H 0.97004 * 120.00457 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.47530 * 299.99954 * 7 5 4 33 33 H 1.09003 * 109.47343 * 59.99974 * 7 5 4 34 34 H 1.07994 * 119.87825 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.74815 * 179.97438 * 10 9 8 36 36 H 1.07999 * 119.87189 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.13075 * 179.97438 * 12 11 10 38 38 H 0.97005 * 119.99637 * 180.02562 * 17 16 14 39 39 H 1.08994 * 108.88797 * 0.90335 * 22 2 1 40 40 H 1.08998 * 108.88587 * 242.49336 * 22 2 1 41 41 H 1.09007 * 109.60557 * 89.83018 * 23 22 2 42 42 H 1.08996 * 109.60238 * 209.96568 * 23 22 2 43 43 H 1.09005 * 111.13108 * 159.35210 * 24 23 22 44 44 H 1.08998 * 111.13135 * 283.48694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5425 2.1485 -1.1684 5 6 1.8814 3.4363 -1.3770 6 8 2.6168 4.0037 -0.5972 7 6 1.3465 4.1709 -2.5791 8 6 1.8713 5.5836 -2.5790 9 6 1.1196 6.5998 -2.0347 10 6 1.5997 7.9002 -2.0338 11 6 2.8405 8.1926 -2.5794 12 6 3.6092 7.1925 -3.1290 13 6 3.1343 5.8677 -3.1303 14 6 3.9183 4.8307 -3.6865 15 1 3.7911 3.8144 -3.3438 16 6 4.8590 5.1212 -4.6811 17 7 4.8032 6.2607 -5.3213 18 14 6.1942 3.8820 -5.0944 19 1 6.0388 2.6815 -4.2342 20 1 6.0781 3.4865 -6.5211 21 1 7.5269 4.4925 -4.8569 22 6 2.0644 -0.7686 1.2192 23 6 2.9639 -1.9405 0.8236 24 6 2.5049 -2.4857 -0.5545 25 16 2.1675 -0.9170 -1.4547 26 1 -0.3633 0.4788 0.9093 27 1 -0.3633 0.5480 -0.8693 28 1 -0.3633 -1.0270 -0.0399 29 1 1.7407 1.9415 0.9093 30 1 3.1521 1.4171 -0.0400 31 1 0.9546 1.6945 -1.7923 32 1 1.6688 3.6633 -3.4882 33 1 0.2574 4.1884 -2.5393 34 1 0.1516 6.3835 -1.6074 35 1 1.0028 8.6915 -1.6049 36 1 3.2048 9.2093 -2.5729 37 1 4.5751 7.4226 -3.5537 38 1 5.4550 6.4619 -6.0110 39 1 1.2202 -1.1500 1.7936 40 1 2.6336 -0.0830 1.8467 41 1 3.9979 -1.6017 0.7569 42 1 2.8880 -2.7288 1.5725 43 1 3.3006 -3.0527 -1.0377 44 1 1.6005 -3.0864 -0.4580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776979823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = -33.731254 kcal Electronic energy + Delta-G solvation = -24424.037435 eV Core-core repulsion = 21045.263316 eV Total energy + Delta-G solvation = -3378.774119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.32296 -37.74396 -36.98686 -34.34879 -33.54490 -31.93555 -31.30274 -29.38052 -27.63494 -27.12519 -25.69132 -24.74104 -22.60779 -20.86357 -20.59924 -20.28199 -19.17370 -17.17782 -16.87707 -16.12144 -16.10361 -15.44283 -15.00684 -14.90850 -14.52960 -14.33768 -14.02275 -13.70621 -13.48766 -13.28683 -12.94029 -12.86667 -12.78032 -12.51065 -11.94531 -11.74838 -11.68886 -11.50455 -11.35356 -11.23763 -11.09105 -10.98596 -10.91763 -10.87964 -10.59801 -10.31275 -9.96740 -9.41407 -9.29831 -9.11519 -9.07695 -8.64437 -7.83511 -7.24151 -7.21703 -6.66364 -4.26478 1.58809 2.12036 2.84557 3.03937 3.13521 3.20912 3.33190 3.42742 3.68593 4.01589 4.20614 4.30704 4.47644 4.63519 4.73566 4.78486 4.88594 5.16859 5.27054 5.37780 5.44857 5.50119 5.58978 5.61831 5.66721 5.77913 5.81622 5.88404 5.95674 6.11285 6.23186 6.34971 6.51106 6.57560 6.81502 6.87469 7.16772 7.36826 7.49500 7.71684 7.94918 8.02448 8.15962 8.20072 8.39249 8.72924 8.93539 8.99896 9.09134 10.27761 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.003979 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.974005 B = 7035.579891 C = 8586.889399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.025 4.025 3 C 0.145 3.855 4 N -0.742 5.742 5 C 0.517 3.483 6 O -0.521 6.521 7 C -0.071 4.071 8 C -0.179 4.179 9 C -0.082 4.082 10 C -0.240 4.240 11 C -0.108 4.108 12 C -0.160 4.160 13 C 0.129 3.871 14 C -0.455 4.455 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.796 5.796 18 Si 0.901 3.099 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.272 1.272 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.075 4.075 25 S -0.272 6.272 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.396 0.604 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.278 0.722 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -16.716 8.761 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C 0.019 3.981 4 N -0.398 5.398 5 C 0.304 3.696 6 O -0.395 6.395 7 C -0.110 4.110 8 C -0.181 4.181 9 C -0.100 4.100 10 C -0.260 4.260 11 C -0.126 4.126 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.484 4.484 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.422 5.422 18 Si 0.725 3.275 19 H -0.183 1.183 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.223 4.223 25 S -0.045 6.045 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.230 0.770 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.624 -15.842 7.965 18.603 hybrid contribution 0.243 -1.101 0.583 1.269 sum -5.381 -16.943 8.548 19.725 Atomic orbital electron populations 1.22031 0.91580 1.02572 1.02911 1.23531 0.98773 0.97150 0.94027 1.21237 0.99362 0.87572 0.89916 1.46154 1.53029 1.13029 1.27546 1.21209 0.80328 0.80496 0.87548 1.90674 1.35058 1.67007 1.46787 1.20259 0.99280 0.95468 0.96031 1.19055 0.96450 0.91556 1.11072 1.20291 0.97528 0.93254 0.98926 1.20294 0.98693 0.95450 1.11541 1.20667 0.95169 0.97336 0.99443 1.21297 1.00281 0.92993 1.03316 1.17345 0.89214 0.92687 0.88097 1.19525 1.16351 0.95466 1.17097 0.90686 1.25868 0.97433 0.95799 0.94880 1.69835 1.31985 1.22735 1.17638 0.86375 0.80854 0.81573 0.78679 1.18348 1.20052 1.19768 1.22090 1.00257 0.96977 0.96783 1.22367 1.00900 0.97323 0.95706 1.24331 1.04334 0.96735 0.96946 1.88221 1.84967 1.12662 1.18608 0.91460 0.91415 0.91805 0.90914 0.90739 0.76968 0.88580 0.90719 0.89825 0.89730 0.89641 0.86539 0.91102 0.90553 0.89776 0.90235 0.90191 0.87744 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.21 37.16 0.30 -0.82 16 2 C -0.02 -0.25 0.84 -90.25 -0.08 -0.32 16 3 C 0.14 1.95 4.39 -4.04 -0.02 1.93 16 4 N -0.74 -11.41 5.06 -60.29 -0.31 -11.71 16 5 C 0.52 10.40 7.44 -10.99 -0.08 10.32 16 6 O -0.52 -12.78 16.03 5.56 0.09 -12.69 16 7 C -0.07 -1.44 5.18 -29.04 -0.15 -1.59 16 8 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 9 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 10 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 11 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 12 C -0.16 -4.38 8.69 -38.87 -0.34 -4.71 16 13 C 0.13 3.54 5.56 -106.82 -0.59 2.95 16 14 C -0.45 -12.36 8.14 -37.74 -0.31 -12.66 16 15 H 0.08 2.02 6.67 -52.49 -0.35 1.67 16 16 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 17 N -0.80 -21.07 10.96 55.55 0.61 -20.46 16 18 Si 0.90 19.59 29.59 -169.99 -5.03 14.56 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.12 -0.96 5.74 -26.39 -0.15 -1.11 16 23 C -0.12 -0.89 6.34 -25.63 -0.16 -1.05 16 24 C -0.08 -0.59 7.52 38.30 0.29 -0.31 16 25 S -0.27 -3.18 21.66 -107.50 -2.33 -5.51 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.61 6.75 -51.93 -0.35 0.26 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.40 5.25 6.97 -40.82 -0.28 4.97 16 32 H 0.10 1.96 7.08 -51.93 -0.37 1.59 16 33 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 34 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.28 6.20 -52.49 -0.33 2.95 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 39 H 0.08 0.49 7.62 -51.93 -0.40 0.09 16 40 H 0.08 0.67 7.62 -51.93 -0.40 0.27 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -31.92 366.57 -11.13 -43.04 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.67 Total: 9.15 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -3.01 Total: -21.91 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.30 Total: -32.17 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.33 Total: -5.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.92 -11.13 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776979823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.313 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds