Wall clock time and date at job start Tue Mar 31 2020 13:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47385 * 2 1 4 4 C 1.50698 * 119.99805 * 87.50193 * 3 2 1 5 5 C 1.33009 * 119.99772 * 267.49438 * 3 2 1 6 6 C 1.50701 * 119.99985 * 187.71032 * 5 3 2 7 7 C 1.47067 * 120.00265 * 7.72076 * 5 3 2 8 8 O 1.21637 * 119.99943 * 6.46406 * 7 5 3 9 9 N 1.34774 * 120.00290 * 186.46847 * 7 5 3 10 10 C 1.40049 * 120.00352 * 184.62604 * 9 7 5 11 11 C 1.38673 * 120.09731 * 325.73828 * 10 9 7 12 12 C 1.38242 * 120.00253 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.21677 * 359.95932 * 12 11 10 14 14 C 1.38204 * 120.20242 * 0.02562 * 13 12 11 15 15 C 1.38781 * 119.99035 * 0.03011 * 14 13 12 16 16 S 1.76199 * 120.10525 * 179.97438 * 15 14 13 17 17 C 1.81397 * 103.00024 * 359.95087 * 16 15 14 18 18 C 1.50702 * 109.47325 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99704 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00411 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00397 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99601 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47394 * 89.99925 * 22 20 18 24 24 H 1.48505 * 109.46635 * 209.99963 * 22 20 18 25 25 H 1.48504 * 109.47139 * 329.99474 * 22 20 18 26 26 H 1.08997 * 109.47136 * 59.99911 * 1 2 3 27 27 H 1.08998 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46824 * 300.00255 * 1 2 3 29 29 H 1.09001 * 109.47078 * 239.99990 * 2 1 3 30 30 H 1.09007 * 109.47088 * 120.00149 * 2 1 3 31 31 H 1.09005 * 109.46915 * 274.47932 * 4 3 2 32 32 H 1.09001 * 109.47455 * 34.47877 * 4 3 2 33 33 H 1.09001 * 109.47017 * 154.48175 * 4 3 2 34 34 H 1.09001 * 109.47474 * 204.74564 * 6 5 3 35 35 H 1.09000 * 109.47032 * 324.75069 * 6 5 3 36 36 H 1.09008 * 109.46719 * 84.74761 * 6 5 3 37 37 H 0.97002 * 119.99784 * 4.61604 * 9 7 5 38 38 H 1.07998 * 119.99844 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.89275 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.89844 * 179.74137 * 13 12 11 41 41 H 1.07999 * 120.00545 * 180.02562 * 14 13 12 42 42 H 1.08994 * 109.46923 * 300.00196 * 17 16 15 43 43 H 1.09004 * 109.47238 * 60.00242 * 17 16 15 44 44 H 0.96999 * 119.99923 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2299 2.1501 1.3039 5 6 2.3016 2.0310 -1.1508 6 6 2.9657 3.3837 -1.1491 7 6 1.9508 1.3857 -2.4250 8 8 1.3107 0.3514 -2.4269 9 7 2.3388 1.9402 -3.5905 10 6 1.9235 1.3800 -4.8050 11 6 1.7659 0.0071 -4.9198 12 6 1.3563 -0.5438 -6.1198 13 6 1.1017 0.2703 -7.2085 14 6 1.2556 1.6398 -7.1037 15 6 1.6675 2.2017 -5.9034 16 16 1.8654 3.9472 -5.7666 17 6 1.4214 4.5392 -7.4228 18 6 1.5432 6.0406 -7.4690 19 1 1.8567 6.5842 -6.5900 20 6 1.2553 6.7202 -8.6336 21 7 1.3611 8.0305 -8.6737 22 14 0.7137 5.7798 -10.1541 23 1 -0.7657 5.6517 -10.1561 24 1 1.1489 6.5125 -11.3703 25 1 1.3277 4.4276 -10.1447 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.2877 2.6022 1.6137 32 1 2.5635 1.4467 2.0668 33 1 2.9814 2.9290 1.1743 34 1 2.7205 3.9102 -2.0715 35 1 2.6110 3.9616 -0.2956 36 1 4.0462 3.2579 -1.0789 37 1 2.9056 2.7273 -3.5881 38 1 1.9631 -0.6319 -4.0718 39 1 1.2345 -1.6133 -6.2073 40 1 0.7860 -0.1658 -8.1447 41 1 1.0555 2.2725 -7.9557 42 1 2.0935 4.0978 -8.1587 43 1 0.3949 4.2505 -7.6489 44 1 1.1589 8.5084 -9.4932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779926281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:42 Heat of formation + Delta-G solvation = -4.070878 kcal Electronic energy + Delta-G solvation = -24031.529535 eV Core-core repulsion = 20654.041586 eV Total energy + Delta-G solvation = -3377.487949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65232 -38.60471 -36.49506 -34.85480 -33.19666 -32.30790 -30.92860 -29.83540 -29.38815 -28.57006 -26.41718 -23.79477 -22.96735 -22.74571 -22.17632 -20.62634 -18.81645 -17.63131 -16.86860 -16.70750 -16.42194 -15.50239 -15.07910 -15.01127 -14.77308 -14.27314 -14.23057 -13.77220 -13.57291 -13.33342 -13.21260 -13.16982 -12.93542 -12.76033 -12.62303 -12.54697 -12.42237 -12.10750 -11.94715 -11.78016 -11.34399 -11.11106 -10.95090 -10.91745 -10.55975 -10.29176 -10.07753 -9.79137 -9.48262 -9.30086 -9.21493 -8.96089 -8.80517 -8.10944 -6.73258 -6.29470 -4.33661 1.08350 1.52569 1.64811 2.22588 3.10745 3.14542 3.20104 3.21948 3.22784 3.40421 3.98861 4.21295 4.53437 4.57782 4.84646 5.01756 5.01834 5.15171 5.21931 5.24024 5.27197 5.41674 5.43088 5.46104 5.51104 5.58647 5.64315 5.70914 5.72217 5.74240 5.92492 6.06267 6.12334 6.25296 6.35112 6.37538 6.41436 6.45577 6.50842 6.55072 6.65938 6.74890 7.18985 7.27060 7.49640 8.15802 8.18071 8.70094 9.25337 10.82144 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003439 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.621133 B = 8140.281935 C = 9493.487204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.033 4.033 4 C -0.129 4.129 5 C -0.196 4.196 6 C -0.121 4.121 7 C 0.554 3.446 8 O -0.520 6.520 9 N -0.660 5.660 10 C 0.151 3.849 11 C -0.105 4.105 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.101 4.101 16 S -0.128 6.128 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.085 0.915 20 C 0.084 3.916 21 N -0.887 5.887 22 Si 0.876 3.124 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -15.453 14.985 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 C -0.035 4.035 4 C -0.185 4.185 5 C -0.199 4.199 6 C -0.178 4.178 7 C 0.345 3.655 8 O -0.399 6.399 9 N -0.305 5.305 10 C 0.050 3.950 11 C -0.127 4.127 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.216 4.216 16 S 0.119 5.881 17 C -0.116 4.116 18 C -0.560 4.560 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.524 5.524 22 Si 0.702 3.298 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.157 0.843 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.311 -15.144 15.837 22.033 hybrid contribution -0.469 -0.562 -2.097 2.221 sum 1.842 -15.706 13.740 20.949 Atomic orbital electron populations 1.21533 0.94240 1.01575 1.01560 1.20994 0.97114 0.92443 1.03377 1.22372 0.91479 0.95677 0.93954 1.21057 1.02872 1.00373 0.94216 1.21100 1.07671 0.99102 0.92066 1.20866 1.00144 0.93152 1.03633 1.18434 0.79094 0.84189 0.83770 1.90698 1.39496 1.22846 1.86892 1.43458 1.50841 1.32310 1.03867 1.17163 1.01647 0.91560 0.84592 1.21137 1.00525 0.92707 0.98324 1.20946 1.01391 0.99481 0.92720 1.21017 1.00713 0.93185 0.98668 1.21125 1.01324 0.95697 0.96470 1.22008 1.04207 0.99100 0.96303 1.85178 1.84134 0.94206 1.24574 1.21725 0.99113 1.01437 0.89322 1.20386 1.48503 0.87003 1.00097 0.89704 1.24820 0.94306 0.94758 0.98279 1.69850 1.47556 1.06649 1.28304 0.86838 0.79698 0.80499 0.82767 1.19686 1.20606 1.18918 0.91738 0.92812 0.93774 0.88048 0.92287 0.90229 0.91195 0.90709 0.91225 0.90683 0.90901 0.74894 0.84280 0.86096 0.86165 0.85379 0.93859 0.94313 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.45 37.16 0.35 -1.06 16 2 C -0.10 -1.06 5.32 -27.88 -0.15 -1.21 16 3 C -0.03 -0.33 5.35 -101.16 -0.54 -0.87 16 4 C -0.13 -0.92 9.48 36.00 0.34 -0.57 16 5 C -0.20 -2.23 5.99 -102.86 -0.62 -2.85 16 6 C -0.12 -1.14 8.73 36.01 0.31 -0.83 16 7 C 0.55 7.82 7.43 -12.68 -0.09 7.73 16 8 O -0.52 -8.06 9.05 5.24 0.05 -8.01 16 9 N -0.66 -9.77 4.92 -10.78 -0.05 -9.82 16 10 C 0.15 2.52 6.32 -83.46 -0.53 1.99 16 11 C -0.11 -1.62 8.70 -39.42 -0.34 -1.97 16 12 C -0.12 -1.73 10.04 -39.56 -0.40 -2.12 16 13 C -0.12 -1.69 10.04 -39.57 -0.40 -2.09 16 14 C -0.12 -2.10 9.36 -39.39 -0.37 -2.47 16 15 C -0.10 -1.84 6.12 -38.90 -0.24 -2.08 16 16 S -0.13 -2.59 20.71 -107.50 -2.23 -4.81 16 17 C 0.03 0.74 3.16 36.01 0.11 0.85 16 18 C -0.52 -14.28 9.68 -34.44 -0.33 -14.62 16 19 H 0.09 2.53 7.96 -52.48 -0.42 2.11 16 20 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 21 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 22 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 26 H 0.06 0.85 6.90 -51.93 -0.36 0.49 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.10 1.25 5.58 -51.93 -0.29 0.96 16 30 H 0.06 0.50 8.11 -51.92 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 6.11 -51.93 -0.32 0.15 16 34 H 0.07 0.73 6.78 -51.93 -0.35 0.37 16 35 H 0.07 0.60 6.45 -51.93 -0.34 0.27 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.41 5.68 6.19 -40.82 -0.25 5.43 16 38 H 0.14 2.09 6.15 -52.49 -0.32 1.76 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.13 2.28 5.88 -52.49 -0.31 1.97 16 42 H 0.04 0.99 6.81 -51.93 -0.35 0.64 16 43 H 0.04 0.89 7.17 -51.92 -0.37 0.52 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -30.08 362.71 -9.87 -39.95 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.23 Total: 6.73 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.98 Total: -19.94 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.72 Total: -35.07 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.05 Total: -8.01 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.23 Total: -4.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.08 -9.87 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779926281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.878 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds