Wall clock time and date at job start Tue Mar 31 2020 12:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39585 * 120.11163 * 6.92884 * 3 2 1 5 5 C 1.37996 * 120.00210 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.21347 * 0.02562 * 5 4 3 7 7 C 1.38946 * 120.21787 * 359.97438 * 6 5 4 8 8 N 1.39940 * 120.00244 * 180.27638 * 7 6 5 9 9 C 1.34777 * 119.99921 * 324.63053 * 8 7 6 10 10 O 1.21293 * 119.99659 * 4.61994 * 9 8 7 11 11 C 1.50693 * 120.00237 * 184.61344 * 9 8 7 12 12 C 1.52999 * 109.47542 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47177 * 305.00882 * 12 11 9 14 14 C 1.50707 * 109.46781 * 65.00207 * 12 11 9 15 15 H 1.07997 * 119.99805 * 34.97926 * 14 12 11 16 16 C 1.37879 * 120.00175 * 214.97730 * 14 12 11 17 17 N 1.31516 * 119.99504 * 5.00942 * 16 14 12 18 18 Si 1.86792 * 120.00032 * 185.00848 * 16 14 12 19 19 H 1.48502 * 109.47271 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47392 * 120.00107 * 18 16 14 21 21 H 1.48502 * 109.47099 * 240.00120 * 18 16 14 22 22 C 1.50699 * 109.47616 * 185.00186 * 12 11 9 23 23 C 1.38233 * 120.00013 * 294.76106 * 22 12 11 24 24 C 1.38237 * 120.00147 * 179.78784 * 23 22 12 25 25 C 1.38241 * 119.99410 * 0.43584 * 24 23 22 26 26 C 1.38231 * 120.00185 * 359.81238 * 25 24 23 27 27 C 1.38233 * 120.00206 * 359.97438 * 26 25 24 28 28 C 1.38643 * 119.99873 * 359.97438 * 7 6 5 29 29 H 4.52046 * 14.03116 * 0.02562 * 4 2 1 30 30 H 1.08005 * 120.00242 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.89263 * 180.02562 * 5 4 3 32 32 H 1.07991 * 119.88875 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00019 * 144.63179 * 8 7 6 34 34 H 1.08999 * 109.47491 * 300.00613 * 11 9 8 35 35 H 1.09001 * 109.46855 * 60.00674 * 11 9 8 36 36 H 0.97001 * 119.99211 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.00091 * 359.97438 * 23 22 12 38 38 H 1.08000 * 120.00199 * 180.27412 * 24 23 22 39 39 H 1.08005 * 119.99721 * 179.83744 * 25 24 23 40 40 H 1.08004 * 119.99641 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.00276 * 179.97438 * 27 26 25 42 42 H 1.08001 * 120.11365 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3069 -1.1977 -0.1457 5 6 4.6868 -1.1944 -0.1459 6 6 5.3797 -0.0068 -0.0016 7 6 4.6912 1.1912 0.1440 8 7 5.3971 2.3914 0.2840 9 6 6.5617 2.4131 0.9620 10 8 7.0402 1.3794 1.3786 11 6 7.2694 3.7216 1.2023 12 6 8.5568 3.4683 1.9893 13 1 8.3219 2.9265 2.9055 14 6 9.5051 2.6502 1.1511 15 1 9.5427 2.7948 0.0815 16 6 10.3249 1.7171 1.7497 17 7 10.2105 1.4706 3.0365 18 14 11.5978 0.8030 0.7331 19 1 11.5243 1.2589 -0.6783 20 1 12.9534 1.0787 1.2730 21 1 11.3271 -0.6558 0.7963 22 6 9.2013 4.7856 2.3359 23 6 9.6877 5.6024 1.3323 24 6 10.2750 6.8128 1.6499 25 6 10.3840 7.2023 2.9718 26 6 9.9022 6.3832 3.9757 27 6 9.3110 5.1748 3.6578 28 6 3.3048 1.1984 0.1444 29 1 -1.0499 -0.0011 -0.0006 30 1 2.7691 -2.1275 -0.2590 31 1 5.2273 -2.1225 -0.2591 32 1 6.4596 -0.0104 -0.0021 33 1 5.0482 3.2077 -0.1070 34 1 7.5129 4.1841 0.2458 35 1 6.6204 4.3863 1.7725 36 1 10.7870 0.8139 3.4576 37 1 9.6062 5.2962 0.2998 38 1 10.6510 7.4529 0.8655 39 1 10.8452 8.1468 3.2202 40 1 9.9878 6.6874 5.0085 41 1 8.9350 4.5347 4.4421 42 1 2.7677 2.1285 0.2579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792914991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:32 Heat of formation + Delta-G solvation = 68.157467 kcal Electronic energy + Delta-G solvation = -24982.264141 eV Core-core repulsion = 21472.464297 eV Total energy + Delta-G solvation = -3509.799844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12351 -38.62728 -38.01211 -34.78133 -33.92490 -33.41607 -31.52759 -30.32366 -30.06618 -29.76166 -28.41069 -25.61166 -23.58070 -23.04735 -22.07887 -21.65154 -20.52270 -19.37650 -18.68647 -17.06549 -16.56532 -16.33032 -16.01757 -15.75421 -15.04091 -14.64352 -14.38891 -14.29083 -13.96674 -13.88839 -13.48287 -13.21194 -13.09725 -12.62374 -12.36832 -12.10411 -11.96264 -11.73927 -11.67352 -11.48964 -11.16632 -10.92820 -10.77484 -10.60988 -10.57601 -10.31371 -10.11579 -9.90547 -9.46688 -9.14017 -8.93089 -8.56630 -8.37801 -8.10141 -7.87311 -7.68204 -5.96453 -3.96699 1.02358 1.42169 2.23145 2.28304 2.62463 2.97791 3.33891 3.39853 3.42005 3.43423 3.49099 4.08153 4.20648 4.47967 4.68950 4.96471 5.17412 5.29984 5.38363 5.49694 5.56617 5.61872 5.65306 5.68117 5.79153 5.82123 6.01511 6.10466 6.14687 6.22787 6.35980 6.40490 6.47205 6.50615 6.58787 6.73079 6.75832 6.85291 6.98896 7.21915 7.25959 7.40060 7.41514 7.46622 7.82334 7.86777 7.89393 8.00972 8.33936 8.87083 9.04400 9.65229 11.13454 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003459 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.966484 B = 8091.838121 C = 9578.370965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C 0.014 3.986 4 C -0.119 4.119 5 C -0.101 4.101 6 C -0.110 4.110 7 C 0.164 3.836 8 N -0.693 5.693 9 C 0.509 3.491 10 O -0.467 6.467 11 C -0.120 4.120 12 C 0.076 3.924 13 H 0.078 0.922 14 C -0.497 4.497 15 H 0.051 0.949 16 C 0.080 3.920 17 N -0.877 5.877 18 Si 0.884 3.116 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.026 4.026 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.131 4.131 29 H 0.222 0.778 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.404 0.596 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.259 0.741 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 3.233 -5.244 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C 0.014 3.986 4 C -0.138 4.138 5 C -0.120 4.120 6 C -0.130 4.130 7 C 0.069 3.931 8 N -0.340 5.340 9 C 0.297 3.703 10 O -0.336 6.336 11 C -0.160 4.160 12 C 0.057 3.943 13 H 0.096 0.904 14 C -0.534 4.534 15 H 0.069 0.931 16 C -0.124 4.124 17 N -0.514 5.514 18 Si 0.712 3.288 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.026 4.026 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.172 4.172 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.151 4.151 29 H 0.239 0.761 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.239 0.761 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.418 2.406 -4.724 13.502 hybrid contribution 0.524 -0.104 -0.655 0.845 sum -11.894 2.302 -5.379 13.255 Atomic orbital electron populations 1.24807 0.95696 0.99952 1.00559 1.20103 0.92016 1.00726 1.00643 1.15623 0.86205 0.93519 1.03280 1.21079 0.94186 0.96673 1.01887 1.21009 0.93483 0.98225 0.99241 1.21640 1.02271 0.91083 0.97987 1.17664 0.90110 0.87346 0.98025 1.43990 1.24229 1.09196 1.56608 1.21193 0.79046 0.93190 0.76841 1.90783 1.62176 1.34037 1.46560 1.21806 0.99180 0.92655 1.02380 1.17881 0.89085 0.89045 0.98275 0.90372 1.20709 1.20833 1.19208 0.92698 0.93057 1.24804 0.96915 0.95884 0.94750 1.69902 1.38023 1.33425 1.10006 0.86679 0.81681 0.79865 0.80575 1.19875 1.21183 1.21081 1.20766 0.94848 0.94995 0.92015 1.20970 0.98996 0.93605 0.99570 1.21000 1.00923 0.97229 0.95835 1.20817 1.03332 0.99743 0.93349 1.20992 1.00004 0.95428 0.98176 1.21118 1.00523 0.95621 0.96795 1.20870 0.92256 0.97656 1.04349 0.76080 0.85983 0.85334 0.83337 0.76059 0.90193 0.91304 0.93137 0.86752 0.87591 0.87740 0.87574 0.86794 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.13 -1.66 13.24 -38.84 -0.51 -2.18 16 3 C 0.01 0.19 5.72 -107.03 -0.61 -0.42 16 4 C -0.12 -1.54 9.75 -39.17 -0.38 -1.92 16 5 C -0.10 -1.40 10.02 -39.67 -0.40 -1.80 16 6 C -0.11 -1.80 8.70 -39.32 -0.34 -2.14 16 7 C 0.16 2.51 6.29 -83.74 -0.53 1.99 16 8 N -0.69 -10.29 5.33 -9.90 -0.05 -10.34 16 9 C 0.51 9.70 7.42 -10.99 -0.08 9.62 16 10 O -0.47 -11.06 12.43 5.55 0.07 -10.99 16 11 C -0.12 -2.19 4.97 -27.89 -0.14 -2.33 16 12 C 0.08 1.74 1.77 -92.92 -0.16 1.58 16 13 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 14 C -0.50 -12.84 6.29 -34.44 -0.22 -13.06 16 15 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.88 -25.27 12.77 55.43 0.71 -24.56 16 18 Si 0.88 21.62 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 C -0.03 -0.54 4.77 -104.63 -0.50 -1.04 16 23 C -0.11 -2.20 8.88 -39.58 -0.35 -2.55 16 24 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 25 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 26 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 27 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 28 C -0.13 -1.76 9.67 -38.99 -0.38 -2.14 16 29 H 0.22 1.23 7.80 -54.10 -0.42 0.80 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.15 2.83 6.22 -52.49 -0.33 2.51 16 33 H 0.40 4.48 8.82 -40.82 -0.36 4.12 16 34 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.11 2.14 7.82 -52.49 -0.41 1.73 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.10 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -31.77 369.32 -9.64 -41.42 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.20 Total: 9.15 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -5.71 Total: -26.83 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.65 Total: -34.90 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.77 -9.64 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792914991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.574 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds