Wall clock time and date at job start Tue Mar 31 2020 12:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39585 * 120.11163 * 6.92884 * 3 2 1 5 5 C 1.37996 * 120.00210 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.21347 * 0.02562 * 5 4 3 7 7 C 1.38946 * 120.21787 * 359.97438 * 6 5 4 8 8 N 1.39940 * 120.00244 * 180.27638 * 7 6 5 9 9 C 1.34777 * 119.99921 * 324.63053 * 8 7 6 10 10 O 1.21293 * 119.99659 * 4.61994 * 9 8 7 11 11 C 1.50693 * 120.00237 * 184.61344 * 9 8 7 12 12 C 1.52999 * 109.47542 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47177 * 305.00882 * 12 11 9 14 14 C 1.50707 * 109.46781 * 65.00207 * 12 11 9 15 15 H 1.07997 * 119.99805 * 34.97926 * 14 12 11 16 16 C 1.37879 * 120.00175 * 214.97730 * 14 12 11 17 17 N 1.31516 * 119.99504 * 5.00942 * 16 14 12 18 18 Si 1.86792 * 120.00032 * 185.00848 * 16 14 12 19 19 H 1.48502 * 109.47271 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47392 * 120.00107 * 18 16 14 21 21 H 1.48502 * 109.47099 * 240.00120 * 18 16 14 22 22 C 1.50699 * 109.47616 * 185.00186 * 12 11 9 23 23 C 1.38233 * 120.00013 * 294.76106 * 22 12 11 24 24 C 1.38237 * 120.00147 * 179.78784 * 23 22 12 25 25 C 1.38241 * 119.99410 * 0.43584 * 24 23 22 26 26 C 1.38231 * 120.00185 * 359.81238 * 25 24 23 27 27 C 1.38233 * 120.00206 * 359.97438 * 26 25 24 28 28 C 1.38643 * 119.99873 * 359.97438 * 7 6 5 29 29 H 4.52046 * 14.03116 * 0.02562 * 4 2 1 30 30 H 1.08005 * 120.00242 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.89263 * 180.02562 * 5 4 3 32 32 H 1.07991 * 119.88875 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00019 * 144.63179 * 8 7 6 34 34 H 1.08999 * 109.47491 * 300.00613 * 11 9 8 35 35 H 1.09001 * 109.46855 * 60.00674 * 11 9 8 36 36 H 0.97001 * 119.99211 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.00091 * 359.97438 * 23 22 12 38 38 H 1.08000 * 120.00199 * 180.27412 * 24 23 22 39 39 H 1.08005 * 119.99721 * 179.83744 * 25 24 23 40 40 H 1.08004 * 119.99641 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.00276 * 179.97438 * 27 26 25 42 42 H 1.08001 * 120.11365 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3069 -1.1977 -0.1457 5 6 4.6868 -1.1944 -0.1459 6 6 5.3797 -0.0068 -0.0016 7 6 4.6912 1.1912 0.1440 8 7 5.3971 2.3914 0.2840 9 6 6.5617 2.4131 0.9620 10 8 7.0402 1.3794 1.3786 11 6 7.2694 3.7216 1.2023 12 6 8.5568 3.4683 1.9893 13 1 8.3219 2.9265 2.9055 14 6 9.5051 2.6502 1.1511 15 1 9.5427 2.7948 0.0815 16 6 10.3249 1.7171 1.7497 17 7 10.2105 1.4706 3.0365 18 14 11.5978 0.8030 0.7331 19 1 11.5243 1.2589 -0.6783 20 1 12.9534 1.0787 1.2730 21 1 11.3271 -0.6558 0.7963 22 6 9.2013 4.7856 2.3359 23 6 9.6877 5.6024 1.3323 24 6 10.2750 6.8128 1.6499 25 6 10.3840 7.2023 2.9718 26 6 9.9022 6.3832 3.9757 27 6 9.3110 5.1748 3.6578 28 6 3.3048 1.1984 0.1444 29 1 -1.0499 -0.0011 -0.0006 30 1 2.7691 -2.1275 -0.2590 31 1 5.2273 -2.1225 -0.2591 32 1 6.4596 -0.0104 -0.0021 33 1 5.0482 3.2077 -0.1070 34 1 7.5129 4.1841 0.2458 35 1 6.6204 4.3863 1.7725 36 1 10.7870 0.8139 3.4576 37 1 9.6062 5.2962 0.2998 38 1 10.6510 7.4529 0.8655 39 1 10.8452 8.1468 3.2202 40 1 9.9878 6.6874 5.0085 41 1 8.9350 4.5347 4.4421 42 1 2.7677 2.1285 0.2579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792914991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:32 Heat of formation + Delta-G solvation = 51.794099 kcal Electronic energy + Delta-G solvation = -24982.973710 eV Core-core repulsion = 21472.464297 eV Total energy + Delta-G solvation = -3510.509413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44525 -40.03509 -39.35676 -36.15879 -35.57151 -34.42070 -33.41269 -31.51559 -31.41561 -30.99237 -29.77884 -27.44870 -24.92384 -24.41744 -23.32272 -23.06918 -21.86876 -20.95340 -19.76505 -18.55954 -18.23583 -17.60109 -17.16255 -17.12953 -16.45644 -16.36510 -15.84615 -15.54504 -15.38676 -15.32048 -14.72686 -14.55743 -14.26972 -14.15935 -13.97808 -13.64566 -13.56949 -13.18432 -12.88957 -12.87763 -12.64821 -12.52544 -12.44360 -12.18036 -11.83080 -11.71425 -11.46600 -11.28040 -11.14261 -10.95518 -10.57661 -10.38695 -9.63512 -9.54921 -9.20956 -9.06246 -8.03031 -6.05776 -0.03197 0.30469 0.77165 0.82691 1.35919 1.38487 1.46381 1.76949 1.81658 2.13257 2.26582 2.46211 3.02855 3.17788 3.36264 3.38607 3.89036 4.08821 4.18876 4.25134 4.26142 4.35830 4.39726 4.49289 4.55445 4.60939 4.63324 4.73822 4.75046 4.92889 4.98857 5.17073 5.21256 5.32626 5.37310 5.39871 5.48231 5.52090 5.58685 5.67623 5.78608 5.83714 5.95118 6.03074 6.16978 6.41549 6.46491 6.59870 6.63682 7.03389 7.45898 7.57242 9.06705 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003459 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.966484 B = 8091.838121 C = 9578.370965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.197 4.197 3 C 0.015 3.985 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.147 3.853 8 N -0.673 5.673 9 C 0.509 3.491 10 O -0.524 6.524 11 C -0.113 4.113 12 C 0.079 3.921 13 H 0.030 0.970 14 C -0.486 4.486 15 H 0.049 0.951 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.931 3.069 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.293 1.293 22 C -0.049 4.049 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.147 4.147 28 C -0.127 4.127 29 H 0.263 0.737 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.424 0.576 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 5.483 -6.627 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.197 4.197 3 C 0.014 3.986 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.160 4.160 7 C 0.052 3.948 8 N -0.322 5.322 9 C 0.297 3.703 10 O -0.397 6.397 11 C -0.153 4.153 12 C 0.060 3.940 13 H 0.048 0.952 14 C -0.524 4.524 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.555 5.555 18 Si 0.759 3.241 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.219 1.219 22 C -0.050 4.050 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.165 4.165 28 C -0.147 4.147 29 H 0.280 0.720 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.131 0.869 33 H 0.263 0.737 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.460 4.696 -6.157 16.403 hybrid contribution 0.931 -0.742 -0.244 1.215 sum -13.529 3.954 -6.401 15.480 Atomic orbital electron populations 1.25793 0.96386 0.96844 0.96884 1.20212 0.92276 1.03656 1.03569 1.15874 0.87507 0.93423 1.01783 1.21356 0.93607 0.97812 1.00840 1.21172 0.94274 0.97897 0.98786 1.21495 1.00808 0.92970 1.00739 1.17777 0.90977 0.86885 0.99190 1.43629 1.22913 1.10168 1.55466 1.21345 0.79776 0.92649 0.76496 1.90778 1.64043 1.35717 1.49121 1.21689 0.97615 0.92878 1.03119 1.17657 0.90678 0.89447 0.96263 0.95170 1.21009 1.20041 1.18628 0.92715 0.93314 1.25458 0.99014 0.97314 0.95516 1.70054 1.39330 1.34681 1.11436 0.85919 0.79871 0.78397 0.79945 1.18703 1.20989 1.21930 1.20583 0.96373 0.94949 0.93080 1.21063 0.99578 0.94504 0.99155 1.21392 0.99375 0.96429 0.97213 1.21279 1.01782 1.00673 0.92725 1.21287 0.98934 0.94283 1.00115 1.21139 1.02191 0.97035 0.96172 1.21043 0.91196 0.98928 1.03556 0.72050 0.83550 0.83924 0.86904 0.73747 0.87972 0.88619 0.93878 0.86440 0.84115 0.83895 0.85052 0.88724 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 19.25 74.32 1.43 -0.78 16 2 C -0.20 -4.37 13.24 30.02 0.40 -3.98 16 3 C 0.01 0.38 5.72 -21.42 -0.12 0.26 16 4 C -0.12 -2.96 9.75 22.54 0.22 -2.74 16 5 C -0.10 -2.96 10.02 22.21 0.22 -2.73 16 6 C -0.14 -4.91 8.70 22.44 0.20 -4.72 16 7 C 0.15 4.63 6.29 38.11 0.24 4.87 16 8 N -0.67 -20.37 5.33 -303.61 -1.62 -21.99 16 9 C 0.51 20.27 7.42 87.65 0.65 20.92 16 10 O -0.52 -26.72 12.43 -3.07 -0.04 -26.76 16 11 C -0.11 -4.20 4.97 29.85 0.15 -4.06 16 12 C 0.08 3.78 1.77 -12.28 -0.02 3.76 16 13 H 0.03 1.73 6.80 -2.39 -0.02 1.71 16 14 C -0.49 -26.14 6.29 25.60 0.16 -25.98 16 15 H 0.05 2.58 7.82 -2.91 -0.02 2.55 16 16 C 0.03 1.49 5.45 84.65 0.46 1.95 16 17 N -0.92 -56.15 12.77 21.45 0.27 -55.87 16 18 Si 0.93 46.09 29.54 68.60 2.03 48.11 16 19 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 22 C -0.05 -2.13 4.77 -19.87 -0.09 -2.23 16 23 C -0.12 -4.70 8.88 22.27 0.20 -4.50 16 24 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.15 -4.40 10.05 22.27 0.22 -4.18 16 26 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.14 9.67 22.27 0.22 -5.92 16 28 C -0.13 -3.34 9.67 22.65 0.22 -3.12 16 29 H 0.26 1.42 7.80 -4.42 -0.03 1.38 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.11 4.78 6.22 -2.92 -0.02 4.76 16 33 H 0.42 9.05 8.82 -92.71 -0.82 8.23 16 34 H 0.10 3.32 7.90 -2.39 -0.02 3.30 16 35 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.12 4.25 7.82 -2.91 -0.02 4.22 16 38 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 42 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -75.07 369.32 6.05 -69.02 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.22 Total: 28.54 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 5.19 Total: -41.05 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.35 Total: -77.86 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.04 Total: -26.76 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.07 6.05 -69.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792914991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.812 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds