Wall clock time and date at job start Tue Mar 31 2020 12:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36712 * 126.60214 * 2 1 4 4 C 1.47368 * 125.77808 * 359.97438 * 3 2 1 5 5 O 1.21518 * 120.00421 * 0.28494 * 4 3 2 6 6 O 1.34760 * 119.99876 * 180.28163 * 4 3 2 7 7 C 1.45199 * 116.99640 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46842 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47202 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47126 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99934 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99724 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00216 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99644 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47434 * 60.00108 * 14 12 10 16 16 H 1.48505 * 109.47263 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47205 * 299.99693 * 14 12 10 18 18 N 1.34446 * 108.44255 * 180.25389 * 3 2 1 19 19 N 1.28746 * 109.56133 * 359.76987 * 18 3 2 20 20 N 1.35010 * 126.60686 * 179.86432 * 2 1 3 21 21 C 1.40356 * 126.60185 * 0.02562 * 20 2 1 22 22 C 1.40392 * 125.97089 * 154.98366 * 21 20 2 23 23 C 1.35222 * 107.87217 * 180.16460 * 22 21 20 24 24 N 1.34987 * 107.86244 * 359.58260 * 23 22 21 25 25 C 1.46498 * 125.98077 * 180.23040 * 24 23 22 26 26 N 1.31214 * 125.97110 * 334.67989 * 21 20 2 27 27 H 1.09001 * 109.47243 * 270.12955 * 1 2 3 28 28 H 1.08996 * 109.47505 * 30.13293 * 1 2 3 29 29 H 1.09003 * 109.46737 * 150.13358 * 1 2 3 30 30 H 1.08998 * 109.47706 * 300.00020 * 7 6 4 31 31 H 1.08999 * 109.47175 * 60.00509 * 7 6 4 32 32 H 1.08998 * 109.46875 * 300.00392 * 8 7 6 33 33 H 1.08999 * 109.46933 * 60.00223 * 8 7 6 34 34 H 1.09000 * 109.47476 * 300.00540 * 9 8 7 35 35 H 1.08999 * 109.46996 * 60.00260 * 9 8 7 36 36 H 0.96996 * 119.99862 * 180.02562 * 13 12 10 37 37 H 1.07999 * 126.06503 * 0.03489 * 22 21 20 38 38 H 1.08002 * 126.07182 * 179.85220 * 23 22 21 39 39 H 1.08998 * 109.47305 * 90.00358 * 25 24 23 40 40 H 1.09001 * 109.47010 * 210.00533 * 25 24 23 41 41 H 1.09004 * 109.46694 * 329.99920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3222 1.0975 0.0000 4 6 1.8761 2.5021 -0.0005 5 8 0.6892 2.7627 0.0042 6 8 2.7844 3.4975 -0.0062 7 6 2.2730 4.8564 -0.0058 8 6 3.4435 5.8418 -0.0133 9 6 2.9048 7.2738 -0.0123 10 6 4.0577 8.2443 -0.0190 11 1 5.0731 7.8765 -0.0241 12 6 3.8161 9.6017 -0.0188 13 7 2.5796 10.0496 -0.0132 14 14 5.2452 10.8046 -0.0279 15 1 6.0678 10.5869 -1.2449 16 1 4.7223 12.1946 -0.0268 17 1 6.0815 10.5889 1.1800 18 7 3.5996 0.6785 -0.0057 19 7 3.6311 -0.6086 -0.0043 20 7 2.3121 -1.0838 0.0026 21 6 1.9066 -2.4275 0.0052 22 6 2.6543 -3.5154 -0.4727 23 6 1.9170 -4.6351 -0.2963 24 7 0.7502 -4.2761 0.2798 25 6 -0.3407 -5.1808 0.6508 26 7 0.7648 -2.8871 0.4600 27 1 -0.3634 0.0023 1.0277 28 1 -0.3634 0.8887 -0.5159 29 1 -0.3633 -0.8912 -0.5118 30 1 1.6600 5.0143 -0.8931 31 1 1.6684 5.0169 0.8868 32 1 4.0569 5.6840 0.8738 33 1 4.0478 5.6812 -0.9062 34 1 2.2911 7.4318 -0.8991 35 1 2.3007 7.4340 0.8808 36 1 2.4097 11.0046 -0.0134 37 1 3.6422 -3.4664 -0.9064 38 1 2.2113 -5.6391 -0.5644 39 1 -0.1911 -5.5307 1.6722 40 1 -1.2909 -4.6509 0.5838 41 1 -0.3518 -6.0339 -0.0276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814575190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:09 Heat of formation + Delta-G solvation = 70.112315 kcal Electronic energy + Delta-G solvation = -25041.210079 eV Core-core repulsion = 21152.938492 eV Total energy + Delta-G solvation = -3888.271587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.85377 -42.37283 -41.28672 -37.92739 -36.46805 -35.90887 -34.11933 -33.70432 -33.01654 -31.42315 -29.73144 -28.74336 -27.72526 -25.83958 -24.92773 -24.35528 -22.58481 -22.15120 -21.56659 -21.24809 -19.43250 -18.63631 -18.11634 -18.02601 -17.70845 -17.34346 -17.05556 -16.48411 -16.43282 -15.62690 -15.56372 -14.95996 -14.83789 -14.39988 -14.27108 -14.20599 -14.10558 -13.91121 -13.74646 -13.72988 -13.36602 -13.27012 -12.80324 -12.70165 -12.52162 -12.43733 -12.39891 -12.07960 -12.04174 -11.84820 -11.47541 -11.40867 -11.24561 -10.68595 -10.54543 -10.36967 -9.77028 -8.19806 -6.30905 -0.61352 0.10169 0.20019 0.72092 1.33287 1.42630 1.45784 1.51061 1.53895 1.69090 1.70463 2.42884 2.80973 3.09184 3.13758 3.19813 3.38382 3.80830 3.83867 4.03025 4.05278 4.12711 4.38149 4.42714 4.43565 4.45917 4.49423 4.56228 4.65461 4.77343 4.78139 4.81944 4.91025 4.96543 5.08392 5.30201 5.47431 5.51261 5.66630 5.82201 5.87111 6.15217 6.21639 6.40166 6.65076 6.84029 7.38002 8.92021 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.043737 B = 0.001877 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.032022 B =14909.887778 C =15474.956222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.161 3.839 3 C -0.106 4.106 4 C 0.557 3.443 5 O -0.511 6.511 6 O -0.345 6.345 7 C 0.078 3.922 8 C -0.096 4.096 9 C 0.028 3.972 10 C -0.546 4.546 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.267 1.267 18 N -0.188 5.188 19 N -0.050 5.050 20 N -0.286 5.286 21 C 0.254 3.746 22 C -0.267 4.267 23 C 0.102 3.898 24 N -0.346 5.346 25 C 0.088 3.912 26 N -0.306 5.306 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.001 0.999 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.166 0.834 38 H 0.242 0.758 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -39.597 -0.570 40.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.024 3.976 3 C -0.242 4.242 4 C 0.400 3.600 5 O -0.399 6.399 6 O -0.261 6.261 7 C 0.005 3.995 8 C -0.134 4.134 9 C -0.009 4.009 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 N -0.063 5.063 19 N -0.030 5.030 20 N -0.066 5.066 21 C 0.004 3.996 22 C -0.297 4.297 23 C -0.045 4.045 24 N -0.130 5.130 25 C -0.051 4.051 26 N -0.136 5.136 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.258 0.742 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.595 -39.512 0.011 40.235 hybrid contribution 0.349 1.283 -0.240 1.351 sum -7.245 -38.229 -0.229 38.910 Atomic orbital electron populations 1.20860 0.81785 1.05925 1.06015 1.22398 0.97545 0.84637 0.93001 1.19956 0.89566 0.92450 1.22247 1.19389 0.83738 0.84366 0.72553 1.90818 1.17346 1.84420 1.47344 1.86618 1.39468 1.16943 1.83031 1.23306 0.97843 0.75674 1.02697 1.21483 0.96310 0.93154 1.02437 1.18923 0.95918 0.90349 0.95753 1.21601 0.93756 0.91964 1.51062 0.91943 1.25977 0.98613 1.00574 0.94580 1.70085 1.21050 1.14642 1.51333 0.85457 0.78882 0.77250 0.79191 1.19187 1.20719 1.19208 1.74760 1.19229 1.03865 1.08486 1.82178 0.94758 1.02657 1.23371 1.46676 1.06552 1.03755 1.49627 1.18743 0.95823 0.81087 1.03939 1.21555 1.04749 0.89439 1.14000 1.23356 0.84537 1.01775 0.94807 1.48811 1.16094 1.02796 1.45274 1.22521 0.86995 0.91605 1.03980 1.77417 1.18801 0.92501 1.24902 0.87147 0.87458 0.88315 0.90871 0.90943 0.91774 0.91706 0.98090 0.98133 0.92667 0.81612 0.74179 0.88743 0.88746 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.14 71.24 0.65 -1.08 16 2 C 0.16 4.26 7.00 41.71 0.29 4.55 16 3 C -0.11 -3.40 7.02 40.79 0.29 -3.12 16 4 C 0.56 19.58 7.96 70.23 0.56 20.14 16 5 O -0.51 -18.17 14.52 19.78 0.29 -17.89 16 6 O -0.35 -13.24 10.23 -56.71 -0.58 -13.82 16 7 C 0.08 3.06 5.48 71.98 0.39 3.45 16 8 C -0.10 -4.25 5.53 30.60 0.17 -4.09 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 11 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 12 C 0.00 0.03 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 14 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 N -0.19 -6.38 12.39 -50.02 -0.62 -7.00 16 19 N -0.05 -1.49 13.70 37.02 0.51 -0.98 16 20 N -0.29 -7.39 3.82 -179.14 -0.68 -8.07 16 21 C 0.25 5.13 7.69 133.25 1.02 6.15 16 22 C -0.27 -3.59 10.78 22.10 0.24 -3.35 16 23 C 0.10 0.51 11.48 83.51 0.96 1.47 16 24 N -0.35 -2.67 4.01 -369.61 -1.48 -4.16 16 25 C 0.09 -0.16 11.47 127.77 1.47 1.30 16 26 N -0.31 -5.19 11.19 -54.33 -0.61 -5.80 16 27 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 2.28 6.45 -2.39 -0.02 2.27 16 29 H 0.10 1.63 7.20 -2.39 -0.02 1.61 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.24 -1.48 8.06 -2.91 -0.02 -1.50 16 39 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 Total: -1.00 -79.55 364.31 7.07 -72.48 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 1.05 Total: -0.83 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.88 Total: -4.03 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.60 Total: -83.08 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.29 Total: -31.70 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -79.55 7.07 -72.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814575190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.594 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds