Wall clock time and date at job start Tue Mar 31 2020 13:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 C 1.50694 * 109.47100 * 240.00406 * 2 1 3 5 5 H 1.08004 * 120.00266 * 236.85835 * 4 2 1 6 6 C 1.37875 * 120.00595 * 56.86096 * 4 2 1 7 7 N 1.31520 * 119.99646 * 5.81646 * 6 4 2 8 8 Si 1.86796 * 120.00401 * 185.82076 * 6 4 2 9 9 H 1.48498 * 109.47141 * 85.02543 * 8 6 4 10 10 H 1.48506 * 109.47238 * 205.02202 * 8 6 4 11 11 H 1.48501 * 109.47138 * 325.01888 * 8 6 4 12 12 C 1.53000 * 109.47382 * 120.00032 * 2 1 3 13 13 O 1.45199 * 109.47170 * 300.00116 * 12 2 1 14 14 C 1.34229 * 117.00108 * 179.97438 * 13 12 2 15 15 O 1.20819 * 119.99629 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.46664 * 180.02562 * 16 14 13 18 18 C 1.36908 * 125.06244 * 264.97354 * 17 16 14 19 19 C 1.34207 * 109.91948 * 180.02562 * 18 17 16 20 20 C 1.46528 * 107.00318 * 0.23803 * 19 18 17 21 21 C 1.39634 * 133.99243 * 179.71985 * 20 19 18 22 22 C 1.36606 * 119.80320 * 180.02562 * 21 20 19 23 23 C 1.39036 * 120.49910 * 0.02562 * 22 21 20 24 24 F 1.35097 * 119.68747 * 180.02562 * 23 22 21 25 25 C 1.37950 * 120.60965 * 359.60804 * 23 22 21 26 26 C 1.37686 * 125.06916 * 84.99946 * 17 16 14 27 27 H 1.08998 * 109.47023 * 293.82227 * 1 2 3 28 28 H 1.08999 * 109.47345 * 53.82935 * 1 2 3 29 29 H 1.08994 * 109.46799 * 173.82917 * 1 2 3 30 30 H 1.09003 * 109.47309 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47552 * 300.00263 * 3 2 1 32 32 H 1.09005 * 109.47391 * 60.00378 * 3 2 1 33 33 H 0.96999 * 120.00328 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47076 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.46979 * 60.00285 * 12 2 1 36 36 H 1.08999 * 109.46838 * 60.00425 * 16 14 13 37 37 H 1.08999 * 109.47107 * 299.99677 * 16 14 13 38 38 H 1.07991 * 125.04057 * 0.05851 * 18 17 16 39 39 H 1.08001 * 126.50027 * 179.97438 * 19 18 17 40 40 H 1.08007 * 120.09838 * 0.02606 * 21 20 19 41 41 H 1.08000 * 119.74651 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.10966 * 179.89307 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6944 -1.5579 -1.1323 6 6 1.6468 -0.2782 -2.4817 7 7 0.9349 0.8205 -2.6075 8 14 2.1354 -1.2532 -3.9982 9 1 1.1497 -2.3401 -4.2268 10 1 2.1615 -0.3525 -5.1787 11 1 3.4834 -1.8420 -3.7951 12 6 2.0401 -0.7212 1.2492 13 8 1.5561 -0.0368 2.4348 14 6 1.9164 -0.5472 3.6229 15 8 2.6127 -1.5334 3.6705 16 6 1.4514 0.1094 4.8972 17 7 1.9754 -0.6314 6.0474 18 6 1.3009 -1.6111 6.7255 19 6 2.0631 -2.0836 7.7240 20 6 3.3267 -1.3428 7.6860 21 6 4.4928 -1.3743 8.4534 22 6 5.5249 -0.5304 8.1552 23 6 5.4232 0.3609 7.0930 24 9 6.4540 1.1877 6.8123 25 6 4.2828 0.4027 6.3178 26 6 3.2192 -0.4458 6.6079 27 1 -0.3633 0.4151 0.9401 28 1 -0.3634 0.6065 -0.8296 29 1 -0.3633 -1.0217 -0.1105 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.6639 1.1248 -3.4877 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 0.3619 0.1085 4.9297 37 1 1.8152 1.1363 4.9305 38 1 0.3038 -1.9532 6.4912 39 1 1.7942 -2.8596 8.4254 40 1 4.5786 -2.0638 9.2803 41 1 6.4265 -0.5558 8.7491 42 1 4.2118 1.0995 5.4957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842758920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:45 Heat of formation + Delta-G solvation = -70.166182 kcal Electronic energy + Delta-G solvation = -26206.481201 eV Core-core repulsion = 22259.913969 eV Total energy + Delta-G solvation = -3946.567232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.93638 -41.63695 -39.96626 -37.18184 -36.54797 -34.95675 -33.13303 -31.38120 -30.85984 -28.74060 -27.69230 -25.71047 -25.64646 -25.04943 -23.18265 -21.99587 -21.34765 -20.28708 -18.95803 -17.72540 -17.68646 -17.29376 -16.42266 -16.08893 -15.96169 -15.86580 -15.62409 -15.11644 -14.80571 -14.46167 -14.08533 -13.79828 -13.56632 -13.30787 -13.16643 -12.83442 -12.81669 -12.37067 -12.06509 -11.96046 -11.58941 -11.46718 -11.26744 -11.17633 -11.00922 -10.76307 -10.50350 -10.40490 -10.21635 -10.01568 -9.85267 -9.50822 -9.41995 -8.84472 -8.42955 -8.34544 -7.88632 -6.08881 -4.19500 0.81680 1.28135 2.19297 2.31957 2.53346 3.14001 3.24649 3.31295 3.35254 3.60623 4.12541 4.33329 4.38744 4.47761 4.59414 4.80786 4.89141 4.95610 5.01435 5.18293 5.22494 5.27289 5.53453 5.68406 5.88050 5.95204 5.98099 5.99067 6.18679 6.35621 6.52251 6.54740 6.64018 6.89367 6.90841 6.94743 6.97220 7.01767 7.05047 7.31121 7.54111 7.64437 7.95506 7.97422 8.10674 8.31017 8.79989 9.46129 10.93045 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002780 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.265003 B =10069.048874 C =10653.304362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.086 3.914 13 O -0.346 6.346 14 C 0.430 3.570 15 O -0.499 6.499 16 C 0.116 3.884 17 N -0.469 5.469 18 C 0.063 3.937 19 C -0.196 4.196 20 C -0.117 4.117 21 C -0.042 4.042 22 C -0.180 4.180 23 C 0.117 3.883 24 F -0.139 7.139 25 C -0.162 4.162 26 C 0.133 3.867 27 H 0.016 0.984 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -0.801 21.347 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.187 4.187 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.132 4.132 7 N -0.519 5.519 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.013 3.987 13 O -0.261 6.261 14 C 0.271 3.729 15 O -0.387 6.387 16 C -0.008 4.008 17 N -0.153 5.153 18 C -0.061 4.061 19 C -0.220 4.220 20 C -0.121 4.121 21 C -0.060 4.060 22 C -0.199 4.199 23 C 0.097 3.903 24 F -0.118 7.118 25 C -0.183 4.183 26 C 0.026 3.974 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.189 0.811 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.638 -0.796 20.867 20.892 hybrid contribution 0.512 -0.542 -1.201 1.414 sum 1.150 -1.338 19.666 19.745 Atomic orbital electron populations 1.21753 0.97249 0.99866 0.99709 1.18254 0.93411 0.93083 0.88186 1.21800 0.98161 0.98118 1.00651 1.20912 1.29871 1.14813 0.89844 0.92491 1.24848 0.94836 0.94746 0.98759 1.69845 1.37431 1.21132 1.23482 0.86555 0.79051 0.79916 0.82180 1.20505 1.21148 1.19920 1.23738 0.98296 0.95839 0.80783 1.86506 1.69041 1.55887 1.14676 1.23776 0.78824 0.83423 0.86914 1.90705 1.34805 1.25159 1.88047 1.21200 1.02321 0.96516 0.80757 1.43496 1.12661 1.33513 1.25608 1.21878 0.98682 0.91335 0.94157 1.21642 0.93161 1.04487 1.02731 1.19231 0.95965 0.99308 0.97631 1.20077 0.90633 0.97225 0.98076 1.20586 1.01136 0.98859 0.99357 1.17134 0.84724 0.91980 0.96493 1.91495 1.56802 1.70229 1.93254 1.19826 0.92280 1.03224 1.02984 1.17732 0.86332 0.98287 0.95003 0.96463 0.90036 0.95530 0.95806 0.89629 0.96562 0.92824 0.92444 0.92393 0.84781 0.85507 0.81078 0.83139 0.84947 0.84786 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.06 37.16 0.30 -2.67 16 2 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 3 C -0.13 -3.04 8.14 37.16 0.30 -2.74 16 4 C -0.52 -13.64 8.01 -34.44 -0.28 -13.91 16 5 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 6 C 0.07 1.85 5.13 -17.82 -0.09 1.76 16 7 N -0.88 -23.59 9.46 55.43 0.52 -23.07 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.09 1.85 4.26 37.16 0.16 2.01 16 13 O -0.35 -6.38 8.77 -39.26 -0.34 -6.73 16 14 C 0.43 6.96 8.03 36.01 0.29 7.25 16 15 O -0.50 -9.80 16.17 -18.75 -0.30 -10.10 16 16 C 0.12 1.25 6.59 -5.19 -0.03 1.22 16 17 N -0.47 -5.60 2.27 -115.70 -0.26 -5.87 16 18 C 0.06 0.64 11.28 -16.71 -0.19 0.45 16 19 C -0.20 -2.00 11.08 -37.66 -0.42 -2.42 16 20 C -0.12 -1.40 6.37 -105.12 -0.67 -2.07 16 21 C -0.04 -0.43 10.05 -39.65 -0.40 -0.82 16 22 C -0.18 -1.91 9.95 -39.87 -0.40 -2.31 16 23 C 0.12 1.48 7.28 -39.39 -0.29 1.19 16 24 F -0.14 -1.83 17.25 2.25 0.04 -1.79 16 25 C -0.16 -2.13 9.97 -39.36 -0.39 -2.52 16 26 C 0.13 1.75 6.80 -84.00 -0.57 1.18 16 27 H 0.02 0.35 7.50 -51.93 -0.39 -0.04 16 28 H 0.08 2.05 6.25 -51.93 -0.32 1.72 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 2.19 6.11 -51.93 -0.32 1.87 16 32 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 34 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.13 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -30.91 359.06 -8.34 -39.26 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.62 Total: 0.07 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.76 Total: -12.81 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.26 Total: -28.93 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.65 Total: -16.83 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.91 -8.34 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.911 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds