Wall clock time and date at job start Tue Mar 31 2020 13:54:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34891 * 119.99829 * 2 1
4 4 C 1.46340 * 119.99650 * 180.02562 * 3 2 1
5 5 O 1.21701 * 120.00528 * 359.97438 * 4 3 2
6 6 N 1.34782 * 119.99961 * 180.02562 * 4 3 2
7 7 C 1.47423 * 125.64708 * 359.96902 * 6 4 3
8 8 C 1.54909 * 104.83351 * 155.90981 * 7 6 4
9 9 C 1.55158 * 101.61642 * 36.99324 * 8 7 6
10 10 O 1.42898 * 110.71953 * 82.87702 * 9 8 7
11 11 C 1.50695 * 110.72412 * 206.15548 * 9 8 7
12 12 H 1.08005 * 120.00032 * 0.02562 * 11 9 8
13 13 C 1.37878 * 120.00476 * 179.97438 * 11 9 8
14 14 N 1.31518 * 119.99546 * 0.02562 * 13 11 9
15 15 Si 1.86797 * 120.00362 * 179.97438 * 13 11 9
16 16 H 1.48506 * 109.46835 * 0.02562 * 15 13 11
17 17 H 1.48499 * 109.46929 * 119.99896 * 15 13 11
18 18 H 1.48494 * 109.46983 * 240.00382 * 15 13 11
19 19 C 1.47016 * 125.64850 * 180.02562 * 6 4 3
20 20 C 1.47110 * 120.00063 * 180.02562 * 2 1 3
21 21 C 1.39894 * 120.14318 * 114.71724 * 20 2 1
22 22 C 1.37796 * 119.84877 * 179.74179 * 21 20 2
23 23 C 1.38686 * 120.14250 * 0.53767 * 22 21 20
24 24 F 1.35104 * 119.85158 * 179.71732 * 23 22 21
25 25 C 1.38684 * 120.29359 * 359.73848 * 23 22 21
26 26 C 1.37789 * 120.14507 * 359.97438 * 25 23 22
27 27 H 1.08999 * 109.47387 * 89.99526 * 1 2 3
28 28 H 1.08999 * 109.47141 * 209.99831 * 1 2 3
29 29 H 1.09002 * 109.46706 * 329.99623 * 1 2 3
30 30 H 1.07996 * 120.00198 * 0.02562 * 3 2 1
31 31 H 1.09000 * 110.36544 * 37.07402 * 7 6 4
32 32 H 1.09002 * 110.37016 * 274.75328 * 7 6 4
33 33 H 1.09002 * 111.00594 * 155.08642 * 8 7 6
34 34 H 1.09002 * 111.00655 * 278.89906 * 8 7 6
35 35 H 0.96707 * 113.99877 * 179.97438 * 10 9 8
36 36 H 0.97004 * 119.99847 * 180.02562 * 14 13 11
37 37 H 1.09000 * 109.88531 * 300.42930 * 19 6 4
38 38 H 1.08996 * 109.88671 * 61.44743 * 19 6 4
39 39 H 1.07998 * 120.07456 * 0.02562 * 21 20 2
40 40 H 1.07995 * 119.92301 * 180.27386 * 22 21 20
41 41 H 1.07991 * 119.92738 * 179.97438 * 25 23 22
42 42 H 1.07998 * 120.07158 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1814 1.1682 0.0000
4 6 3.6449 1.1682 -0.0006
5 8 4.2534 0.1142 -0.0006
6 7 4.3188 2.3354 0.0000
7 6 3.7109 3.6785 0.0004
8 6 4.7928 4.6032 0.6121
9 6 6.0934 3.9919 0.0273
10 8 6.3335 4.4828 -1.2931
11 6 7.2684 4.2783 0.9262
12 1 7.1271 4.8419 1.8366
13 6 8.5238 3.8200 0.5871
14 7 8.6958 3.1333 -0.5213
15 14 9.9805 4.1757 1.7011
16 1 9.5247 4.9608 2.8764
17 1 10.5753 2.8955 2.1620
18 1 10.9991 4.9532 0.9508
19 6 5.7818 2.4801 -0.0010
20 6 2.2426 -1.2740 -0.0006
21 6 3.0319 -1.6290 -1.0997
22 6 3.7226 -2.8213 -1.0915
23 6 3.6275 -3.6737 -0.0017
24 9 4.3027 -4.8440 -0.0024
25 6 2.8422 -3.3304 1.0886
26 6 2.1512 -2.1384 1.0956
27 1 -0.3634 0.0001 -1.0276
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3633 0.8900 0.5139
30 1 1.6415 2.1035 0.0004
31 1 2.8117 3.6876 0.6164
32 1 3.4774 3.9896 -1.0178
33 1 4.6607 5.6326 0.2789
34 1 4.7880 4.5434 1.7005
35 1 7.1355 4.1313 -1.7036
36 1 9.5790 2.8106 -0.7597
37 1 6.2025 1.9991 0.8820
38 1 6.1983 2.0298 -0.9021
39 1 3.1035 -0.9678 -1.9506
40 1 4.3358 -3.0945 -1.9375
41 1 2.7721 -3.9988 1.9339
42 1 1.5396 -1.8724 1.9451
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000844013842.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:54:52
Heat of formation + Delta-G solvation = -83.525970 kcal
Electronic energy + Delta-G solvation = -26751.989316 eV
Core-core repulsion = 22804.842760 eV
Total energy + Delta-G solvation = -3947.146556 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.137 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-48.75136 -39.83853 -38.68462 -37.14072 -34.75926 -34.28286 -32.18443 -31.03615
-30.30001 -29.33846 -28.46596 -27.46765 -25.07490 -23.14814 -22.84390 -22.49069
-20.18834 -19.47528 -18.32128 -17.50436 -17.28323 -16.80510 -16.13198 -15.62941
-15.43809 -15.16909 -14.83777 -14.49965 -14.23972 -13.80598 -13.65561 -13.44498
-13.42254 -13.09008 -12.93794 -12.88652 -12.82849 -12.55549 -12.06866 -11.86048
-11.63537 -11.51342 -11.29635 -11.08891 -10.95772 -10.81004 -10.66083 -10.49493
-10.18825 -9.56706 -9.36925 -9.18577 -8.86042 -8.69111 -8.34410 -8.01137
-7.82943 -6.31458 -4.39887 0.96823 1.44773 1.63427 3.18738 3.27806
3.30965 3.67146 3.72305 3.75527 4.25357 4.40618 4.55453 4.79527
4.87336 4.96299 5.00129 5.24744 5.32082 5.34992 5.38037 5.39976
5.58207 5.64555 5.72047 5.80330 5.92171 6.00755 6.02003 6.10701
6.21471 6.26641 6.37889 6.45592 6.48141 6.59968 6.75115 6.83800
6.98729 7.04020 7.25789 7.36391 7.71715 7.97678 8.24313 8.62921
8.77826 9.29153 9.41101 10.76406
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.013977 B = 0.003753 C = 0.003177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2002.875879 B = 7458.537068 C = 8810.952171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.019 4.019
3 C -0.191 4.191
4 C 0.541 3.459
5 O -0.540 6.540
6 N -0.605 5.605
7 C 0.101 3.899
8 C -0.119 4.119
9 C 0.248 3.752
10 O -0.586 6.586
11 C -0.538 4.538
12 H 0.067 0.933
13 C 0.070 3.930
14 N -0.896 5.896
15 Si 0.903 3.097
16 H -0.271 1.271
17 H -0.282 1.282
18 H -0.281 1.281
19 C 0.103 3.897
20 C -0.049 4.049
21 C -0.018 4.018
22 C -0.155 4.155
23 C 0.096 3.904
24 F -0.146 7.146
25 C -0.161 4.161
26 C -0.081 4.081
27 H 0.078 0.922
28 H 0.071 0.929
29 H 0.072 0.928
30 H 0.130 0.870
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.076 0.924
34 H 0.076 0.924
35 H 0.386 0.614
36 H 0.270 0.730
37 H 0.064 0.936
38 H 0.063 0.937
39 H 0.124 0.876
40 H 0.131 0.869
41 H 0.130 0.870
42 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.172 -6.700 0.256 17.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.021 4.021
3 C -0.212 4.212
4 C 0.332 3.668
5 O -0.421 6.421
6 N -0.337 5.337
7 C -0.022 4.022
8 C -0.157 4.157
9 C 0.208 3.792
10 O -0.397 6.397
11 C -0.576 4.576
12 H 0.085 0.915
13 C -0.132 4.132
14 N -0.535 5.535
15 Si 0.731 3.269
16 H -0.196 1.196
17 H -0.207 1.207
18 H -0.207 1.207
19 C -0.018 4.018
20 C -0.050 4.050
21 C -0.037 4.037
22 C -0.174 4.174
23 C 0.077 3.923
24 F -0.125 7.125
25 C -0.180 4.180
26 C -0.099 4.099
27 H 0.097 0.903
28 H 0.090 0.910
29 H 0.091 0.909
30 H 0.148 0.852
31 H 0.080 0.920
32 H 0.083 0.917
33 H 0.095 0.905
34 H 0.094 0.906
35 H 0.238 0.762
36 H 0.080 0.920
37 H 0.083 0.917
38 H 0.081 0.919
39 H 0.142 0.858
40 H 0.148 0.852
41 H 0.148 0.852
42 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -16.244 -7.111 0.263 17.734
hybrid contribution 1.692 -0.220 0.482 1.773
sum -14.552 -7.331 0.745 16.311
Atomic orbital electron populations
1.20912 0.90250 1.03236 1.02952 1.20986 0.95261 0.91720 0.94152
1.23015 0.94085 0.98032 1.06089 1.17995 0.87655 0.83014 0.78169
1.90856 1.70227 1.29702 1.51283 1.48730 1.09430 1.04990 1.70512
1.22336 0.96478 0.83009 1.00389 1.22762 0.94608 0.98473 0.99815
1.19486 0.91377 0.86381 0.81986 1.86069 1.49719 1.72830 1.31041
1.21572 0.92310 1.35779 1.07922 0.91463 1.25073 0.99304 0.93540
0.95323 1.69584 1.24059 1.36366 1.23520 0.86346 0.81815 0.78212
0.80546 1.19558 1.20744 1.20684 1.23006 0.76069 1.01055 1.01695
1.18700 0.97983 0.93345 0.94949 1.20834 0.91887 0.93628 0.97314
1.20912 1.02586 0.95373 0.98535 1.17799 0.95357 0.82891 0.96274
1.91464 1.78456 1.45708 1.96871 1.20844 1.00108 0.98911 0.98128
1.20871 0.98975 0.92650 0.97396 0.90319 0.90994 0.90879 0.85240
0.92000 0.91713 0.90520 0.90587 0.76192 0.91953 0.91715 0.91856
0.85839 0.85155 0.85221 0.85509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.94 10.03 36.01 0.36 -0.57 16
2 C -0.02 -0.23 5.48 -102.21 -0.56 -0.79 16
3 C -0.19 -2.67 9.12 -37.51 -0.34 -3.01 16
4 C 0.54 10.27 7.65 -13.00 -0.10 10.17 16
5 O -0.54 -11.74 12.54 5.19 0.07 -11.67 16
6 N -0.60 -12.11 3.33 -172.16 -0.57 -12.69 16
7 C 0.10 1.71 6.51 -2.53 -0.02 1.70 16
8 C -0.12 -2.31 6.22 -24.58 -0.15 -2.46 16
9 C 0.25 5.94 0.86 -89.91 -0.08 5.86 16
10 O -0.59 -14.68 13.09 -35.23 -0.46 -15.14 16
11 C -0.54 -13.98 8.11 -34.44 -0.28 -14.26 16
12 H 0.07 1.72 7.76 -52.48 -0.41 1.32 16
13 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16
14 N -0.90 -23.85 10.98 55.43 0.61 -23.24 16
15 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16
16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
19 C 0.10 2.48 5.54 -3.04 -0.02 2.46 16
20 C -0.05 -0.69 3.82 -105.06 -0.40 -1.10 16
21 C -0.02 -0.28 6.97 -39.12 -0.27 -0.55 16
22 C -0.16 -2.31 10.01 -39.58 -0.40 -2.71 16
23 C 0.10 1.42 7.31 -39.25 -0.29 1.14 16
24 F -0.15 -2.19 17.26 2.25 0.04 -2.16 16
25 C -0.16 -2.14 10.01 -39.58 -0.40 -2.54 16
26 C -0.08 -1.04 9.69 -39.12 -0.38 -1.42 16
27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
28 H 0.07 0.51 8.02 -51.93 -0.42 0.09 16
29 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16
30 H 0.13 1.46 6.85 -52.49 -0.36 1.10 16
31 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16
32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
34 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16
35 H 0.39 10.02 6.99 45.56 0.32 10.34 16
36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16
37 H 0.06 1.70 7.81 -51.93 -0.41 1.30 16
38 H 0.06 1.67 8.07 -51.93 -0.42 1.25 16
39 H 0.12 1.82 8.05 -52.49 -0.42 1.40 16
40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16
42 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16
LS Contribution 354.39 15.07 5.34 5.34
Total: -1.00 -29.82 354.39 -8.40 -38.22
By element:
Atomic # 1 Polarization: 17.24 SS G_CDS: -4.99 Total: 12.25 kcal
Atomic # 6 Polarization: -2.94 SS G_CDS: -3.41 Total: -6.35 kcal
Atomic # 7 Polarization: -35.96 SS G_CDS: 0.04 Total: -35.93 kcal
Atomic # 8 Polarization: -26.42 SS G_CDS: -0.40 Total: -26.82 kcal
Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -29.82 -8.40 -38.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000844013842.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.306 kcal
(2) G-P(sol) polarization free energy of solvation -29.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.122 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds