Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34801 * 120.00071 * 2 1 4 4 C 1.46432 * 120.00411 * 5.61230 * 3 2 1 5 5 O 1.21700 * 119.99550 * 354.75293 * 4 3 2 6 6 N 1.34771 * 120.00208 * 174.74661 * 4 3 2 7 7 C 1.47418 * 125.65070 * 359.97438 * 6 4 3 8 8 C 1.54905 * 104.83487 * 155.88919 * 7 6 4 9 9 C 1.55154 * 101.58675 * 37.00525 * 8 7 6 10 10 O 1.42902 * 110.71937 * 82.85874 * 9 8 7 11 11 C 1.50696 * 110.87556 * 206.06742 * 9 8 7 12 12 H 1.07998 * 120.00312 * 355.06280 * 11 9 8 13 13 C 1.37878 * 119.99967 * 175.05850 * 11 9 8 14 14 N 1.31507 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99885 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47131 * 90.00594 * 15 13 11 17 17 H 1.48503 * 109.47237 * 210.00313 * 15 13 11 18 18 H 1.48502 * 109.47274 * 330.00212 * 15 13 11 19 19 C 1.47023 * 125.64739 * 179.97438 * 6 4 3 20 20 C 1.47216 * 119.99807 * 180.02562 * 2 1 3 21 21 C 1.39861 * 120.15380 * 114.72381 * 20 2 1 22 22 C 1.37879 * 119.86927 * 179.74277 * 21 20 2 23 23 C 1.38386 * 120.20540 * 0.53036 * 22 21 20 24 24 C 1.38602 * 120.31593 * 359.72406 * 23 22 21 25 25 F 1.35095 * 119.93994 * 179.97438 * 24 23 22 26 26 C 1.38144 * 120.11502 * 0.02562 * 24 23 22 27 27 H 1.08998 * 109.47172 * 58.16948 * 1 2 3 28 28 H 1.08997 * 109.47437 * 178.16969 * 1 2 3 29 29 H 1.09009 * 109.47173 * 298.17090 * 1 2 3 30 30 H 1.07997 * 120.00150 * 185.61287 * 3 2 1 31 31 H 1.09007 * 110.36180 * 274.72472 * 7 6 4 32 32 H 1.09004 * 110.37141 * 37.04434 * 7 6 4 33 33 H 1.09005 * 111.00794 * 155.08338 * 8 7 6 34 34 H 1.09003 * 111.00425 * 278.92878 * 8 7 6 35 35 H 0.96701 * 113.99900 * 185.02569 * 10 9 8 36 36 H 0.97003 * 120.00381 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.88463 * 300.46602 * 19 6 4 38 38 H 1.08999 * 109.88270 * 61.62610 * 19 6 4 39 39 H 1.07997 * 120.06457 * 359.97438 * 21 20 2 40 40 H 1.08008 * 119.89608 * 180.25721 * 22 21 20 41 41 H 1.07992 * 119.84203 * 179.69633 * 23 22 21 42 42 H 1.08011 * 120.09338 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 1.4542 2.4326 0.1240 5 8 0.2372 2.4370 0.1309 6 7 2.1329 3.5920 0.2306 7 6 3.6005 3.7311 0.2366 8 6 3.8635 5.1807 -0.2417 9 6 2.6898 5.9464 0.4242 10 8 3.0028 6.2715 1.7801 11 6 2.3490 7.1902 -0.3554 12 1 2.9534 7.4792 -1.2024 13 6 1.2654 7.9592 0.0127 14 7 0.5296 7.6076 1.0444 15 14 0.8435 9.5014 -0.9532 16 1 -0.0911 9.1556 -2.0543 17 1 0.2008 10.4904 -0.0508 18 1 2.0851 10.0843 -1.5224 19 6 1.5323 4.9277 0.3601 20 6 2.2430 -1.2750 -0.0006 21 6 3.0323 -1.6300 -1.0992 22 6 3.7234 -2.8231 -1.0913 23 6 3.6296 -3.6748 -0.0046 24 6 2.8456 -3.3335 1.0862 25 9 2.7591 -4.1708 2.1428 26 6 2.1517 -2.1390 1.0944 27 1 -0.3633 0.5420 -0.8731 28 1 -0.3634 -1.0271 -0.0328 29 1 -0.3634 0.4852 0.9060 30 1 3.2571 1.1697 -0.0915 31 1 3.9910 3.5873 1.2442 32 1 4.0522 3.0166 -0.4516 33 1 4.8242 5.5444 0.1231 34 1 3.8086 5.2497 -1.3281 35 1 2.2736 6.6824 2.2644 36 1 -0.2325 8.1489 1.3036 37 1 0.9022 5.1363 -0.5046 38 1 0.9406 4.9810 1.2740 39 1 3.1033 -0.9693 -1.9505 40 1 4.3364 -3.0958 -1.9377 41 1 4.1696 -4.6100 -0.0067 42 1 1.5405 -1.8735 1.9444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -89.168358 kcal Electronic energy + Delta-G solvation = -26064.869575 eV Core-core repulsion = 22117.478347 eV Total energy + Delta-G solvation = -3947.391228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.15522 -39.79803 -39.11659 -37.41124 -34.79599 -34.25785 -32.24318 -31.03790 -30.33716 -30.04015 -28.21681 -27.34661 -25.16818 -23.85585 -22.84958 -22.59329 -20.37812 -19.55703 -18.30431 -17.29997 -17.08017 -16.68747 -16.46087 -16.37240 -15.85299 -15.47422 -14.93100 -14.64441 -14.49698 -14.23338 -13.98700 -13.66726 -13.37057 -12.97921 -12.93161 -12.88004 -12.55408 -12.27056 -12.11955 -11.99300 -11.79949 -11.55199 -11.43019 -11.31426 -11.05421 -10.79514 -10.67539 -10.50905 -10.19036 -9.56727 -9.34132 -9.20489 -9.13963 -8.80943 -8.69205 -8.32578 -7.83290 -6.29714 -4.38356 0.65204 0.88447 1.46825 3.20017 3.23205 3.27786 3.30352 3.59073 3.71626 3.95502 4.25769 4.35839 4.52281 4.69588 4.81068 4.96050 4.99974 5.03872 5.17883 5.38197 5.43882 5.62684 5.69789 5.72066 5.74629 5.78400 5.90340 5.94464 5.99980 6.02804 6.10002 6.20761 6.40332 6.48637 6.50000 6.59653 6.74294 6.84856 6.98635 7.25089 7.37427 7.71520 8.00256 8.22836 8.64113 8.74152 9.27736 9.36540 10.78061 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.002589 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.295544 B =10812.972951 C =11023.195110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.020 4.020 3 C -0.187 4.187 4 C 0.547 3.453 5 O -0.548 6.548 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.118 4.118 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.105 3.895 20 C -0.020 4.020 21 C -0.116 4.116 22 C -0.089 4.089 23 C -0.156 4.156 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.138 4.138 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.382 0.618 36 H 0.270 0.730 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -19.166 -2.974 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.022 4.022 3 C -0.208 4.208 4 C 0.338 3.662 5 O -0.430 6.430 6 N -0.338 5.338 7 C -0.022 4.022 8 C -0.156 4.156 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.576 4.576 12 H 0.084 0.916 13 C -0.133 4.133 14 N -0.532 5.532 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.017 4.017 20 C -0.021 4.021 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.174 4.174 24 C 0.081 3.919 25 F -0.118 7.118 26 C -0.157 4.157 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.578 -19.427 -2.983 20.431 hybrid contribution -0.728 0.923 -0.082 1.178 sum 4.849 -18.504 -3.065 19.373 Atomic orbital electron populations 1.20956 0.89484 1.00856 1.04896 1.20969 0.96418 0.90460 0.94323 1.22906 1.00182 0.91960 1.05745 1.17844 0.86947 0.83207 0.78237 1.90778 1.13387 1.86941 1.51878 1.48698 1.07649 1.07390 1.70067 1.22345 0.80923 0.98463 1.00492 1.22751 1.00094 0.92509 1.00232 1.19510 0.87777 0.90923 0.81099 1.86108 1.44297 1.83270 1.25702 1.21491 1.12817 1.08501 1.14773 0.91564 1.25073 0.95310 0.98008 0.94909 1.69693 1.18151 1.39303 1.26097 0.86406 0.78631 0.82177 0.79715 1.20433 1.20982 1.19692 1.22993 0.98147 0.78676 1.01854 1.18784 0.96109 0.93516 0.93650 1.21459 0.96551 0.97230 0.98127 1.20956 0.98487 0.93503 0.97724 1.21237 1.00899 1.01742 0.93567 1.17558 0.99737 0.89310 0.85336 1.91509 1.95009 1.70301 1.55011 1.21248 1.01474 0.93018 0.99973 0.89558 0.93146 0.89522 0.85619 0.91694 0.91975 0.90519 0.90474 0.76767 0.92003 0.91472 0.91609 0.84815 0.84680 0.84740 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.33 36.01 0.30 -1.12 16 2 C -0.02 -0.25 5.48 -102.20 -0.56 -0.81 16 3 C -0.19 -2.72 9.09 -37.50 -0.34 -3.07 16 4 C 0.55 10.49 7.75 -12.96 -0.10 10.39 16 5 O -0.55 -11.99 13.48 5.19 0.07 -11.92 16 6 N -0.61 -12.22 3.33 -172.15 -0.57 -12.79 16 7 C 0.10 1.73 6.55 -2.54 -0.02 1.71 16 8 C -0.12 -2.29 6.23 -24.59 -0.15 -2.44 16 9 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 10 O -0.58 -14.51 13.07 -35.23 -0.46 -14.97 16 11 C -0.54 -13.88 8.13 -34.44 -0.28 -14.16 16 12 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 13 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 14 N -0.89 -23.64 10.96 55.43 0.61 -23.03 16 15 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.10 2.50 5.24 -3.06 -0.02 2.49 16 20 C -0.02 -0.22 5.23 -105.07 -0.55 -0.77 16 21 C -0.12 -1.05 9.73 -39.11 -0.38 -1.43 16 22 C -0.09 -0.67 10.03 -39.66 -0.40 -1.07 16 23 C -0.16 -1.29 10.02 -39.39 -0.39 -1.69 16 24 C 0.10 1.01 7.29 -39.48 -0.29 0.72 16 25 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 26 C -0.14 -1.47 9.76 -39.04 -0.38 -1.85 16 27 H 0.09 1.28 7.33 -51.93 -0.38 0.90 16 28 H 0.05 0.56 7.99 -51.93 -0.41 0.14 16 29 H 0.09 1.31 7.17 -51.92 -0.37 0.94 16 30 H 0.13 1.56 6.81 -52.49 -0.36 1.21 16 31 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.06 0.85 7.08 -51.93 -0.37 0.49 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.38 9.72 7.44 45.56 0.34 10.06 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.07 1.75 7.82 -51.93 -0.41 1.35 16 38 H 0.07 1.72 7.91 -51.93 -0.41 1.31 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -28.90 356.15 -8.57 -37.47 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.87 Total: 11.64 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.73 Total: -5.57 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.04 Total: -35.82 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.39 Total: -26.89 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.90 -8.57 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.701 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds