Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34801 * 120.00071 * 2 1 4 4 C 1.46432 * 120.00411 * 5.61230 * 3 2 1 5 5 O 1.21700 * 119.99550 * 354.75293 * 4 3 2 6 6 N 1.34771 * 120.00208 * 174.74661 * 4 3 2 7 7 C 1.47418 * 125.65070 * 359.97438 * 6 4 3 8 8 C 1.54905 * 104.83487 * 155.88919 * 7 6 4 9 9 C 1.55154 * 101.58675 * 37.00525 * 8 7 6 10 10 O 1.42902 * 110.71937 * 82.85874 * 9 8 7 11 11 C 1.50696 * 110.87556 * 206.06742 * 9 8 7 12 12 H 1.07998 * 120.00312 * 355.06280 * 11 9 8 13 13 C 1.37878 * 119.99967 * 175.05850 * 11 9 8 14 14 N 1.31507 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99885 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47131 * 90.00594 * 15 13 11 17 17 H 1.48503 * 109.47237 * 210.00313 * 15 13 11 18 18 H 1.48502 * 109.47274 * 330.00212 * 15 13 11 19 19 C 1.47023 * 125.64739 * 179.97438 * 6 4 3 20 20 C 1.47216 * 119.99807 * 180.02562 * 2 1 3 21 21 C 1.39861 * 120.15380 * 114.72381 * 20 2 1 22 22 C 1.37879 * 119.86927 * 179.74277 * 21 20 2 23 23 C 1.38386 * 120.20540 * 0.53036 * 22 21 20 24 24 C 1.38602 * 120.31593 * 359.72406 * 23 22 21 25 25 F 1.35095 * 119.93994 * 179.97438 * 24 23 22 26 26 C 1.38144 * 120.11502 * 0.02562 * 24 23 22 27 27 H 1.08998 * 109.47172 * 58.16948 * 1 2 3 28 28 H 1.08997 * 109.47437 * 178.16969 * 1 2 3 29 29 H 1.09009 * 109.47173 * 298.17090 * 1 2 3 30 30 H 1.07997 * 120.00150 * 185.61287 * 3 2 1 31 31 H 1.09007 * 110.36180 * 274.72472 * 7 6 4 32 32 H 1.09004 * 110.37141 * 37.04434 * 7 6 4 33 33 H 1.09005 * 111.00794 * 155.08338 * 8 7 6 34 34 H 1.09003 * 111.00425 * 278.92878 * 8 7 6 35 35 H 0.96701 * 113.99900 * 185.02569 * 10 9 8 36 36 H 0.97003 * 120.00381 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.88463 * 300.46602 * 19 6 4 38 38 H 1.08999 * 109.88270 * 61.62610 * 19 6 4 39 39 H 1.07997 * 120.06457 * 359.97438 * 21 20 2 40 40 H 1.08008 * 119.89608 * 180.25721 * 22 21 20 41 41 H 1.07992 * 119.84203 * 179.69633 * 23 22 21 42 42 H 1.08011 * 120.09338 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 1.4542 2.4326 0.1240 5 8 0.2372 2.4370 0.1309 6 7 2.1329 3.5920 0.2306 7 6 3.6005 3.7311 0.2366 8 6 3.8635 5.1807 -0.2417 9 6 2.6898 5.9464 0.4242 10 8 3.0028 6.2715 1.7801 11 6 2.3490 7.1902 -0.3554 12 1 2.9534 7.4792 -1.2024 13 6 1.2654 7.9592 0.0127 14 7 0.5296 7.6076 1.0444 15 14 0.8435 9.5014 -0.9532 16 1 -0.0911 9.1556 -2.0543 17 1 0.2008 10.4904 -0.0508 18 1 2.0851 10.0843 -1.5224 19 6 1.5323 4.9277 0.3601 20 6 2.2430 -1.2750 -0.0006 21 6 3.0323 -1.6300 -1.0992 22 6 3.7234 -2.8231 -1.0913 23 6 3.6296 -3.6748 -0.0046 24 6 2.8456 -3.3335 1.0862 25 9 2.7591 -4.1708 2.1428 26 6 2.1517 -2.1390 1.0944 27 1 -0.3633 0.5420 -0.8731 28 1 -0.3634 -1.0271 -0.0328 29 1 -0.3634 0.4852 0.9060 30 1 3.2571 1.1697 -0.0915 31 1 3.9910 3.5873 1.2442 32 1 4.0522 3.0166 -0.4516 33 1 4.8242 5.5444 0.1231 34 1 3.8086 5.2497 -1.3281 35 1 2.2736 6.6824 2.2644 36 1 -0.2325 8.1489 1.3036 37 1 0.9022 5.1363 -0.5046 38 1 0.9406 4.9810 1.2740 39 1 3.1033 -0.9693 -1.9505 40 1 4.3364 -3.0958 -1.9377 41 1 4.1696 -4.6100 -0.0067 42 1 1.5405 -1.8735 1.9444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -106.339478 kcal Electronic energy + Delta-G solvation = -26065.614171 eV Core-core repulsion = 22117.478347 eV Total energy + Delta-G solvation = -3948.135824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92287 -41.16994 -40.09742 -39.02548 -36.16531 -35.73182 -34.24033 -31.98161 -31.67193 -30.95412 -29.77414 -28.80859 -26.88345 -24.97119 -23.98901 -23.54180 -21.67002 -21.22094 -19.55061 -19.12891 -18.21463 -17.94753 -17.28441 -17.20806 -17.08977 -16.63438 -16.57154 -16.27313 -15.89384 -15.41394 -15.00067 -14.81750 -14.76023 -14.59613 -14.34035 -13.99983 -13.88051 -13.53415 -13.45695 -13.28265 -13.05685 -12.87262 -12.77637 -12.70091 -12.42998 -12.32573 -12.28770 -12.12839 -12.05266 -11.16846 -10.77679 -10.64164 -10.52510 -10.26409 -9.92277 -9.67476 -9.42383 -8.27017 -6.42891 -0.18281 0.19039 0.42546 1.40309 1.42319 1.52097 2.11485 2.25836 2.37757 2.56672 2.99722 3.15543 3.46724 3.79926 3.82413 3.86351 3.95982 4.09840 4.12977 4.15297 4.26043 4.36019 4.42268 4.54381 4.65131 4.71271 4.73365 4.80090 4.96925 5.03084 5.03758 5.10368 5.13119 5.21330 5.29234 5.31777 5.36260 5.40708 5.48145 5.56788 5.73972 5.87668 6.06035 6.62922 6.72201 7.20796 7.26545 7.34084 8.78975 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.002589 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.295544 B =10812.972951 C =11023.195110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.009 3.991 3 C -0.200 4.200 4 C 0.540 3.460 5 O -0.588 6.588 6 N -0.614 5.614 7 C 0.105 3.895 8 C -0.112 4.112 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.556 4.556 12 H 0.067 0.933 13 C 0.024 3.976 14 N -0.916 5.916 15 Si 0.963 3.037 16 H -0.279 1.279 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.124 3.876 20 C -0.039 4.039 21 C -0.111 4.111 22 C -0.080 4.080 23 C -0.146 4.146 24 C 0.082 3.918 25 F -0.149 7.149 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.374 0.626 36 H 0.269 0.731 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -21.256 -4.660 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.221 4.221 4 C 0.333 3.667 5 O -0.472 6.472 6 N -0.346 5.346 7 C -0.016 4.016 8 C -0.150 4.150 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.595 4.595 12 H 0.086 0.914 13 C -0.177 4.177 14 N -0.555 5.555 15 Si 0.788 3.212 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.189 1.189 19 C 0.000 4.000 20 C -0.039 4.039 21 C -0.129 4.129 22 C -0.097 4.097 23 C -0.165 4.165 24 C 0.063 3.937 25 F -0.127 7.127 26 C -0.166 4.166 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.167 0.833 40 H 0.188 0.812 41 H 0.176 0.824 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.060 -21.537 -4.673 23.465 hybrid contribution -1.535 1.453 0.437 2.158 sum 6.524 -20.084 -4.235 21.538 Atomic orbital electron populations 1.20902 0.90488 1.01791 1.03059 1.21087 0.95958 0.91300 0.91012 1.22732 1.01155 0.89659 1.08511 1.18672 0.86799 0.84280 0.76950 1.90759 1.15362 1.87589 1.53500 1.48746 1.09012 1.06225 1.70570 1.22499 0.78977 0.98106 1.02042 1.22752 0.98730 0.93199 1.00342 1.19746 0.89838 0.90737 0.80604 1.86098 1.43934 1.83194 1.26323 1.21841 1.13013 1.09502 1.15102 0.91444 1.25828 0.95314 1.00746 0.95776 1.69809 1.18368 1.40155 1.27213 0.85476 0.78450 0.78906 0.78333 1.20466 1.20791 1.18855 1.22447 0.97704 0.81466 0.98345 1.18623 0.97634 0.92675 0.94966 1.21688 0.95550 0.98017 0.97649 1.21331 0.97798 0.92325 0.98286 1.21592 0.99625 1.02584 0.92694 1.17750 1.00743 0.89253 0.85957 1.91488 1.95175 1.70473 1.55598 1.21238 1.01881 0.93484 0.99986 0.91129 0.90725 0.91690 0.82663 0.91104 0.87323 0.89169 0.89668 0.77664 0.92159 0.94930 0.95297 0.83334 0.81222 0.82421 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.88 8.33 71.24 0.59 -2.28 16 2 C 0.01 0.21 5.48 -18.29 -0.10 0.11 16 3 C -0.20 -5.52 9.09 23.62 0.21 -5.30 16 4 C 0.54 20.93 7.75 86.38 0.67 21.60 16 5 O -0.59 -26.97 13.48 -4.35 -0.06 -27.02 16 6 N -0.61 -24.90 3.33 -816.79 -2.72 -27.61 16 7 C 0.11 3.39 6.55 86.85 0.57 3.96 16 8 C -0.11 -4.20 6.23 31.98 0.20 -4.00 16 9 C 0.23 11.17 0.85 -10.35 -0.01 11.16 16 10 O -0.59 -29.79 13.07 -148.98 -1.95 -31.74 16 11 C -0.56 -29.18 8.13 25.60 0.21 -28.97 16 12 H 0.07 3.43 7.78 -2.91 -0.02 3.41 16 13 C 0.02 1.27 5.27 84.66 0.45 1.72 16 14 N -0.92 -50.32 10.96 21.45 0.24 -50.08 16 15 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 19 C 0.12 6.18 5.24 86.73 0.45 6.63 16 20 C -0.04 -0.75 5.23 -20.15 -0.11 -0.86 16 21 C -0.11 -1.58 9.73 22.58 0.22 -1.36 16 22 C -0.08 -0.84 10.03 22.22 0.22 -0.61 16 23 C -0.15 -1.87 10.02 22.39 0.22 -1.64 16 24 C 0.08 1.48 7.29 22.33 0.16 1.65 16 25 F -0.15 -3.03 17.26 44.97 0.78 -2.25 16 26 C -0.15 -2.89 9.76 22.62 0.22 -2.67 16 27 H 0.07 2.15 7.33 -2.39 -0.02 2.14 16 28 H 0.07 1.61 7.99 -2.39 -0.02 1.59 16 29 H 0.06 2.07 7.17 -2.38 -0.02 2.05 16 30 H 0.16 3.30 6.81 -2.91 -0.02 3.28 16 31 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.11 2.52 7.08 -2.38 -0.02 2.50 16 33 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.08 3.02 8.04 -2.39 -0.02 3.00 16 35 H 0.37 19.89 7.44 -74.06 -0.55 19.34 16 36 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.03 1.80 7.82 -2.38 -0.02 1.78 16 38 H 0.03 1.61 7.91 -2.39 -0.02 1.59 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -66.19 356.15 3.00 -63.19 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.50 Total: 32.18 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.19 Total: -0.88 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.48 Total: -77.69 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -2.01 Total: -58.76 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -66.19 3.00 -63.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.147 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds