Wall clock time and date at job start Tue Mar 31 2020 12:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 119.99984 * 2 1 4 4 C 1.53006 * 109.47390 * 270.00093 * 3 2 1 5 5 H 1.08999 * 115.54474 * 29.42260 * 4 3 2 6 6 C 1.52992 * 117.50173 * 243.74519 * 4 3 2 7 7 C 1.52998 * 117.49843 * 175.08383 * 4 3 2 8 8 C 1.53004 * 117.49862 * 214.98236 * 7 4 3 9 9 C 1.52994 * 117.49981 * 0.02562 * 7 4 3 10 10 C 1.34779 * 119.99883 * 180.02562 * 2 1 3 11 11 O 1.21609 * 119.99978 * 174.66416 * 10 2 1 12 12 C 1.47425 * 120.00202 * 354.65332 * 10 2 1 13 13 C 1.39674 * 120.21817 * 309.13036 * 12 10 2 14 14 C 1.37814 * 119.94075 * 180.24956 * 13 12 10 15 15 C 1.38660 * 120.38007 * 359.76472 * 14 13 12 16 16 C 1.37914 * 120.43651 * 359.95805 * 15 14 13 17 17 C 1.39111 * 120.04884 * 0.02562 * 16 15 14 18 18 S 1.76206 * 120.18666 * 180.02562 * 17 16 15 19 19 C 1.76202 * 100.00085 * 8.26074 * 18 17 16 20 20 H 1.08002 * 119.99700 * 354.92833 * 19 18 17 21 21 C 1.38806 * 120.00138 * 174.64995 * 19 18 17 22 22 N 1.31546 * 120.00118 * 180.27658 * 21 19 18 23 23 Si 1.86801 * 119.99998 * 0.28023 * 21 19 18 24 24 H 1.48497 * 109.47372 * 89.99498 * 23 21 19 25 25 H 1.48493 * 109.47153 * 209.99892 * 23 21 19 26 26 H 1.48505 * 109.46989 * 329.99737 * 23 21 19 27 27 H 1.08999 * 109.46907 * 274.35659 * 1 2 3 28 28 H 1.08994 * 109.47701 * 34.36067 * 1 2 3 29 29 H 1.09004 * 109.47068 * 154.36377 * 1 2 3 30 30 H 1.09003 * 109.47472 * 30.00086 * 3 2 1 31 31 H 1.08997 * 109.47359 * 150.00060 * 3 2 1 32 32 H 1.09004 * 117.50025 * 0.02562 * 6 4 3 33 33 H 1.09003 * 117.49722 * 144.99099 * 6 4 3 34 34 H 1.09002 * 109.46924 * 60.00175 * 8 7 4 35 35 H 1.08994 * 109.46989 * 180.02562 * 8 7 4 36 36 H 1.08999 * 109.47078 * 300.00315 * 8 7 4 37 37 H 1.08998 * 109.47577 * 60.00069 * 9 7 4 38 38 H 1.09007 * 109.46939 * 179.97438 * 9 7 4 39 39 H 1.08997 * 109.47240 * 299.99398 * 9 7 4 40 40 H 1.07999 * 120.03320 * 359.97438 * 13 12 10 41 41 H 1.07992 * 119.81026 * 179.74517 * 14 13 12 42 42 H 1.07994 * 119.77980 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.97550 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00620 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.7086 1.3883 -2.1712 6 6 3.9072 1.7960 -1.9085 7 6 3.1069 3.0765 -1.6578 8 6 2.6676 3.8856 -2.8798 9 6 3.4568 3.8961 -0.4141 10 6 2.1389 -1.1672 -0.0005 11 8 3.3510 -1.1695 -0.0985 12 6 1.4066 -2.4413 0.1179 13 6 0.4747 -2.6239 1.1422 14 6 -0.2028 -3.8191 1.2506 15 6 0.0311 -4.8424 0.3447 16 6 0.9435 -4.6769 -0.6761 17 6 1.6373 -3.4778 -0.8026 18 16 2.8035 -3.2621 -2.1059 19 6 2.4956 -4.7258 -3.0373 20 1 1.8035 -5.4669 -2.6654 21 6 3.1382 -4.9238 -4.2516 22 7 2.9043 -6.0140 -4.9495 23 14 4.3354 -3.6421 -4.8946 24 1 5.7024 -3.9511 -4.4036 25 1 4.3273 -3.6581 -6.3794 26 1 3.9281 -2.2981 -4.4118 27 1 -0.3633 0.0781 1.0247 28 1 -0.3634 0.8483 -0.5800 29 1 -0.3633 -0.9265 -0.4446 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.6827 1.5372 -1.1875 33 1 4.1205 1.5300 -2.9438 34 1 1.5978 4.0853 -2.8180 35 1 3.2128 4.8291 -2.9060 36 1 2.8796 3.3186 -3.7863 37 1 4.1571 3.3357 0.2052 38 1 3.9135 4.8384 -0.7167 39 1 2.5494 4.0980 0.1551 40 1 0.2886 -1.8309 1.8513 41 1 -0.9198 -3.9595 2.0458 42 1 -0.5050 -5.7752 0.4390 43 1 1.1196 -5.4788 -1.3778 44 1 3.3536 -6.1526 -5.7980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856462864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:45 Heat of formation + Delta-G solvation = 13.837415 kcal Electronic energy + Delta-G solvation = -24595.283383 eV Core-core repulsion = 21218.571996 eV Total energy + Delta-G solvation = -3376.711387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98792 -38.58047 -37.46667 -35.10851 -32.75254 -31.10479 -30.46559 -29.59342 -27.95390 -27.10897 -26.07469 -25.91007 -22.95317 -22.11735 -21.10393 -19.53392 -18.73425 -17.96204 -16.91358 -16.27469 -16.04558 -15.44937 -15.20172 -14.72380 -14.47692 -14.33360 -13.87632 -13.77923 -13.52715 -13.19570 -12.89544 -12.81150 -12.59582 -12.51845 -12.33135 -12.28283 -12.04236 -11.93487 -11.84193 -11.38718 -11.29449 -11.21594 -11.17165 -10.99365 -10.55173 -9.79199 -9.76083 -9.73388 -9.53156 -9.39850 -8.87440 -8.68788 -8.43251 -8.38370 -6.84896 -6.50815 -4.24323 1.53705 1.89193 2.81275 3.06121 3.17547 3.29725 3.31290 3.41336 3.77236 4.10982 4.25716 4.55724 4.64487 4.70205 4.83314 4.91260 4.99093 5.01089 5.22885 5.31922 5.39222 5.43907 5.47995 5.50354 5.55419 5.59065 5.73921 5.80320 5.81932 5.82998 5.83283 5.92496 6.00444 6.03622 6.06859 6.23075 6.29137 6.32070 6.47898 6.71049 6.78382 6.94059 7.03558 7.42327 7.61557 7.72444 8.30414 8.56269 8.91898 10.56255 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005373 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.418496 B = 5209.596310 C = 7444.812695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.153 3.847 4 C -0.158 4.158 5 H 0.104 0.896 6 C -0.157 4.157 7 C -0.132 4.132 8 C -0.113 4.113 9 C -0.114 4.114 10 C 0.569 3.431 11 O -0.515 6.515 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.170 4.170 15 C -0.081 4.081 16 C -0.142 4.142 17 C -0.024 4.024 18 S 0.012 5.988 19 C -0.554 4.554 20 H 0.109 0.891 21 C 0.104 3.896 22 N -0.863 5.863 23 Si 0.848 3.152 24 H -0.263 1.263 25 H -0.268 1.268 26 H -0.235 1.235 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 16.221 9.542 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.350 5.350 3 C 0.030 3.970 4 C -0.177 4.177 5 H 0.122 0.878 6 C -0.193 4.193 7 C -0.133 4.133 8 C -0.170 4.170 9 C -0.171 4.171 10 C 0.358 3.642 11 O -0.389 6.389 12 C -0.170 4.170 13 C -0.090 4.090 14 C -0.194 4.194 15 C -0.102 4.102 16 C -0.167 4.167 17 C -0.142 4.142 18 S 0.270 5.730 19 C -0.700 4.700 20 H 0.127 0.873 21 C -0.107 4.107 22 N -0.497 5.497 23 Si 0.672 3.328 24 H -0.188 1.188 25 H -0.193 1.193 26 H -0.159 1.159 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.036 16.976 8.824 19.554 hybrid contribution -0.527 -0.820 -0.315 1.024 sum -4.563 16.157 8.509 18.822 Atomic orbital electron populations 1.21826 0.79631 1.03537 1.01247 1.47723 1.06813 1.05488 1.75014 1.20907 0.97469 0.84276 0.94364 1.22867 0.97332 0.99054 0.98492 0.87789 1.23251 0.94368 0.99230 1.02496 1.21626 1.04958 0.89099 0.97610 1.21333 1.00853 0.99185 0.95652 1.21331 1.01038 0.99205 0.95565 1.18334 0.87112 0.83328 0.75442 1.90779 1.13660 1.86865 1.47645 1.19216 1.02797 0.94178 1.00783 1.20910 0.94267 0.97415 0.96433 1.20750 1.03089 0.94284 1.01228 1.21129 0.96751 0.98232 0.94130 1.21551 0.97724 0.97682 0.99719 1.22309 0.98538 0.94691 0.98625 1.83543 1.40460 1.29737 1.19283 1.23013 1.32950 1.05964 1.08100 0.87330 1.24761 0.95502 0.95418 0.95065 1.69882 1.40787 1.25151 1.13847 0.86894 0.82472 0.83737 0.79695 1.18753 1.19320 1.15908 0.92924 0.91662 0.90183 0.90598 0.89982 0.88532 0.89073 0.92452 0.92330 0.92480 0.92327 0.92317 0.92391 0.86578 0.86687 0.86563 0.83668 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 9.17 59.85 0.55 1.46 16 2 N -0.62 -9.00 2.87 -182.85 -0.53 -9.53 16 3 C 0.15 1.93 4.75 -4.04 -0.02 1.92 16 4 C -0.16 -2.06 5.73 -90.62 -0.52 -2.58 16 5 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 6 C -0.16 -2.15 9.47 -26.70 -0.25 -2.40 16 7 C -0.13 -1.44 2.70 -154.47 -0.42 -1.85 16 8 C -0.11 -1.09 9.85 37.16 0.37 -0.72 16 9 C -0.11 -1.02 8.86 37.15 0.33 -0.69 16 10 C 0.57 10.76 6.60 -12.52 -0.08 10.68 16 11 O -0.51 -11.43 15.49 5.27 0.08 -11.35 16 12 C -0.16 -2.99 4.61 -104.76 -0.48 -3.47 16 13 C -0.07 -1.08 8.00 -39.20 -0.31 -1.39 16 14 C -0.17 -2.50 10.02 -39.58 -0.40 -2.90 16 15 C -0.08 -1.35 10.03 -39.54 -0.40 -1.75 16 16 C -0.14 -2.93 9.24 -39.38 -0.36 -3.30 16 17 C -0.02 -0.54 6.13 -38.39 -0.24 -0.77 16 18 S 0.01 0.31 17.77 -107.50 -1.91 -1.60 16 19 C -0.55 -15.47 9.62 30.94 0.30 -15.17 16 20 H 0.11 3.11 5.09 -52.49 -0.27 2.85 16 21 C 0.10 2.91 5.50 -17.46 -0.10 2.82 16 22 N -0.86 -25.00 13.96 55.49 0.77 -24.22 16 23 Si 0.85 20.85 27.74 -169.99 -4.72 16.14 16 24 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.24 -5.73 6.73 56.52 0.38 -5.35 16 27 H 0.05 0.48 7.62 -51.93 -0.40 0.08 16 28 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.08 1.02 6.33 -51.93 -0.33 0.70 16 30 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 31 H 0.08 1.15 7.23 -51.93 -0.38 0.77 16 32 H 0.10 1.38 7.94 -51.93 -0.41 0.97 16 33 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 36 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 37 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.06 0.47 7.93 -51.93 -0.41 0.05 16 39 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 40 H 0.12 1.45 7.15 -52.49 -0.38 1.08 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.15 3.27 4.99 -52.49 -0.26 3.01 16 44 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -31.48 369.46 -9.31 -40.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.55 Total: 4.33 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.04 Total: -20.13 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.25 Total: -33.75 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.72 Total: 16.14 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.91 Total: -1.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.48 -9.31 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856462864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.632 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds