Wall clock time and date at job start Tue Mar 31 2020 12:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 119.99984 * 2 1 4 4 C 1.53006 * 109.47390 * 270.00093 * 3 2 1 5 5 H 1.08999 * 115.54474 * 29.42260 * 4 3 2 6 6 C 1.52992 * 117.50173 * 243.74519 * 4 3 2 7 7 C 1.52998 * 117.49843 * 175.08383 * 4 3 2 8 8 C 1.53004 * 117.49862 * 214.98236 * 7 4 3 9 9 C 1.52994 * 117.49981 * 0.02562 * 7 4 3 10 10 C 1.34779 * 119.99883 * 180.02562 * 2 1 3 11 11 O 1.21609 * 119.99978 * 174.66416 * 10 2 1 12 12 C 1.47425 * 120.00202 * 354.65332 * 10 2 1 13 13 C 1.39674 * 120.21817 * 309.13036 * 12 10 2 14 14 C 1.37814 * 119.94075 * 180.24956 * 13 12 10 15 15 C 1.38660 * 120.38007 * 359.76472 * 14 13 12 16 16 C 1.37914 * 120.43651 * 359.95805 * 15 14 13 17 17 C 1.39111 * 120.04884 * 0.02562 * 16 15 14 18 18 S 1.76206 * 120.18666 * 180.02562 * 17 16 15 19 19 C 1.76202 * 100.00085 * 8.26074 * 18 17 16 20 20 H 1.08002 * 119.99700 * 354.92833 * 19 18 17 21 21 C 1.38806 * 120.00138 * 174.64995 * 19 18 17 22 22 N 1.31546 * 120.00118 * 180.27658 * 21 19 18 23 23 Si 1.86801 * 119.99998 * 0.28023 * 21 19 18 24 24 H 1.48497 * 109.47372 * 89.99498 * 23 21 19 25 25 H 1.48493 * 109.47153 * 209.99892 * 23 21 19 26 26 H 1.48505 * 109.46989 * 329.99737 * 23 21 19 27 27 H 1.08999 * 109.46907 * 274.35659 * 1 2 3 28 28 H 1.08994 * 109.47701 * 34.36067 * 1 2 3 29 29 H 1.09004 * 109.47068 * 154.36377 * 1 2 3 30 30 H 1.09003 * 109.47472 * 30.00086 * 3 2 1 31 31 H 1.08997 * 109.47359 * 150.00060 * 3 2 1 32 32 H 1.09004 * 117.50025 * 0.02562 * 6 4 3 33 33 H 1.09003 * 117.49722 * 144.99099 * 6 4 3 34 34 H 1.09002 * 109.46924 * 60.00175 * 8 7 4 35 35 H 1.08994 * 109.46989 * 180.02562 * 8 7 4 36 36 H 1.08999 * 109.47078 * 300.00315 * 8 7 4 37 37 H 1.08998 * 109.47577 * 60.00069 * 9 7 4 38 38 H 1.09007 * 109.46939 * 179.97438 * 9 7 4 39 39 H 1.08997 * 109.47240 * 299.99398 * 9 7 4 40 40 H 1.07999 * 120.03320 * 359.97438 * 13 12 10 41 41 H 1.07992 * 119.81026 * 179.74517 * 14 13 12 42 42 H 1.07994 * 119.77980 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.97550 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00620 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.7086 1.3883 -2.1712 6 6 3.9072 1.7960 -1.9085 7 6 3.1069 3.0765 -1.6578 8 6 2.6676 3.8856 -2.8798 9 6 3.4568 3.8961 -0.4141 10 6 2.1389 -1.1672 -0.0005 11 8 3.3510 -1.1695 -0.0985 12 6 1.4066 -2.4413 0.1179 13 6 0.4747 -2.6239 1.1422 14 6 -0.2028 -3.8191 1.2506 15 6 0.0311 -4.8424 0.3447 16 6 0.9435 -4.6769 -0.6761 17 6 1.6373 -3.4778 -0.8026 18 16 2.8035 -3.2621 -2.1059 19 6 2.4956 -4.7258 -3.0373 20 1 1.8035 -5.4669 -2.6654 21 6 3.1382 -4.9238 -4.2516 22 7 2.9043 -6.0140 -4.9495 23 14 4.3354 -3.6421 -4.8946 24 1 5.7024 -3.9511 -4.4036 25 1 4.3273 -3.6581 -6.3794 26 1 3.9281 -2.2981 -4.4118 27 1 -0.3633 0.0781 1.0247 28 1 -0.3634 0.8483 -0.5800 29 1 -0.3633 -0.9265 -0.4446 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.6827 1.5372 -1.1875 33 1 4.1205 1.5300 -2.9438 34 1 1.5978 4.0853 -2.8180 35 1 3.2128 4.8291 -2.9060 36 1 2.8796 3.3186 -3.7863 37 1 4.1571 3.3357 0.2052 38 1 3.9135 4.8384 -0.7167 39 1 2.5494 4.0980 0.1551 40 1 0.2886 -1.8309 1.8513 41 1 -0.9198 -3.9595 2.0458 42 1 -0.5050 -5.7752 0.4390 43 1 1.1196 -5.4788 -1.3778 44 1 3.3536 -6.1526 -5.7980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856462864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:44 Heat of formation + Delta-G solvation = -3.868758 kcal Electronic energy + Delta-G solvation = -24596.051180 eV Core-core repulsion = 21218.571996 eV Total energy + Delta-G solvation = -3377.479184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30594 -39.69948 -38.82580 -36.36409 -34.87789 -32.45528 -31.92842 -30.57067 -28.77452 -28.08377 -27.98518 -27.18747 -24.31283 -23.56235 -22.26190 -20.96069 -19.79216 -19.56431 -18.34166 -17.75021 -17.43262 -17.18318 -16.60952 -16.02750 -15.67405 -15.58599 -15.21464 -14.96542 -14.86229 -14.56293 -14.19616 -13.96828 -13.82226 -13.71768 -13.65268 -13.29729 -13.21098 -13.15329 -13.04368 -12.93884 -12.77135 -12.63498 -12.44464 -12.29774 -12.00427 -11.54044 -11.42053 -11.17707 -10.72955 -10.62291 -10.60236 -10.46141 -9.83391 -9.58489 -8.73433 -8.63871 -6.37026 0.09677 0.44959 0.94613 1.18409 1.32798 1.55005 1.70210 2.07744 2.09917 2.54303 2.71734 2.77361 2.87525 3.62219 3.68886 3.82868 3.91950 4.00499 4.17952 4.21384 4.32685 4.40070 4.50112 4.54214 4.59573 4.61811 4.74630 4.76747 4.80789 4.86966 4.91695 4.96717 5.05165 5.05647 5.06412 5.08845 5.21934 5.27703 5.38041 5.44743 5.49276 5.59573 5.62492 5.66818 6.02852 6.13287 6.36260 6.78228 7.19440 8.46743 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005373 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.418496 B = 5209.596310 C = 7444.812695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.154 3.846 4 C -0.167 4.167 5 H 0.090 0.910 6 C -0.188 4.188 7 C -0.100 4.100 8 C -0.115 4.115 9 C -0.115 4.115 10 C 0.559 3.441 11 O -0.561 6.561 12 C -0.157 4.157 13 C -0.060 4.060 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.164 4.164 17 C -0.052 4.052 18 S -0.046 6.046 19 C -0.559 4.559 20 H 0.087 0.913 21 C 0.058 3.942 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.263 1.263 25 H -0.249 1.249 26 H -0.240 1.240 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 19.181 12.756 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C 0.032 3.968 4 C -0.186 4.186 5 H 0.108 0.892 6 C -0.225 4.225 7 C -0.100 4.100 8 C -0.172 4.172 9 C -0.172 4.172 10 C 0.348 3.652 11 O -0.440 6.440 12 C -0.169 4.169 13 C -0.079 4.079 14 C -0.160 4.160 15 C -0.098 4.098 16 C -0.189 4.189 17 C -0.168 4.168 18 S 0.207 5.793 19 C -0.706 4.706 20 H 0.104 0.896 21 C -0.149 4.149 22 N -0.539 5.539 23 Si 0.723 3.277 24 H -0.188 1.188 25 H -0.173 1.173 26 H -0.164 1.164 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.166 0.834 43 H 0.131 0.869 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.885 19.960 12.093 24.332 hybrid contribution 0.087 -1.703 -1.022 1.988 sum -6.797 18.257 11.070 22.407 Atomic orbital electron populations 1.22116 0.77150 1.03765 1.03872 1.47804 1.08381 1.04796 1.72928 1.21066 0.97444 0.84149 0.94166 1.22855 0.96033 1.01293 0.98446 0.89212 1.23212 0.94952 1.03169 1.01165 1.21753 1.01330 0.88066 0.98892 1.21391 1.02002 0.99466 0.94352 1.21392 1.02014 0.99240 0.94505 1.18485 0.86696 0.84538 0.75497 1.90760 1.15626 1.87586 1.50034 1.19523 1.03097 0.93581 1.00664 1.21416 0.92248 0.99006 0.95274 1.21385 1.01747 0.92374 1.00465 1.21507 0.95216 1.00373 0.92729 1.21450 0.99704 0.96617 1.01109 1.22261 0.99202 0.96641 0.98663 1.83419 1.44716 1.29181 1.21966 1.23111 1.32355 1.06536 1.08584 0.89582 1.25484 0.97017 0.97097 0.95351 1.69948 1.42516 1.26760 1.14684 0.86100 0.80287 0.81337 0.80000 1.18801 1.17269 1.16421 0.89194 0.89383 0.91862 0.86458 0.91639 0.89926 0.90910 0.91033 0.90528 0.93800 0.92964 0.90806 0.90314 0.82224 0.81277 0.83436 0.86916 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 9.17 127.77 1.17 2.51 16 2 N -0.61 -16.47 2.87 -850.67 -2.44 -18.91 16 3 C 0.15 3.60 4.75 86.38 0.41 4.01 16 4 C -0.17 -4.27 5.73 -10.79 -0.06 -4.34 16 5 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 6 C -0.19 -5.41 9.47 30.62 0.29 -5.12 16 7 C -0.10 -2.03 2.70 -52.16 -0.14 -2.17 16 8 C -0.12 -1.99 9.85 71.98 0.71 -1.28 16 9 C -0.11 -1.72 8.86 71.98 0.64 -1.09 16 10 C 0.56 20.96 6.60 86.66 0.57 21.53 16 11 O -0.56 -25.86 15.49 -4.06 -0.06 -25.92 16 12 C -0.16 -5.83 4.61 -19.95 -0.09 -5.92 16 13 C -0.06 -1.57 8.00 22.52 0.18 -1.39 16 14 C -0.14 -3.28 10.02 22.27 0.22 -3.05 16 15 C -0.08 -2.38 10.03 22.29 0.22 -2.15 16 16 C -0.16 -6.96 9.24 22.40 0.21 -6.75 16 17 C -0.05 -2.37 6.13 23.04 0.14 -2.22 16 18 S -0.05 -2.46 17.77 -56.49 -1.00 -3.47 16 19 C -0.56 -33.50 9.62 67.96 0.65 -32.85 16 20 H 0.09 5.39 5.09 -2.91 -0.01 5.37 16 21 C 0.06 3.43 5.50 84.87 0.47 3.89 16 22 N -0.90 -55.03 13.96 21.64 0.30 -54.73 16 23 Si 0.90 45.45 27.74 68.60 1.90 47.35 16 24 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.24 -12.18 6.73 99.48 0.67 -11.51 16 27 H 0.09 1.05 7.62 -2.39 -0.02 1.03 16 28 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 29 H 0.06 1.42 6.33 -2.38 -0.02 1.40 16 30 H 0.12 1.78 7.70 -2.39 -0.02 1.76 16 31 H 0.07 1.79 7.23 -2.39 -0.02 1.77 16 32 H 0.08 2.56 7.94 -2.39 -0.02 2.54 16 33 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.07 7.92 -2.39 -0.02 1.05 16 36 H 0.04 0.88 7.90 -2.39 -0.02 0.86 16 37 H 0.05 0.87 7.90 -2.39 -0.02 0.85 16 38 H 0.07 0.92 7.93 -2.38 -0.02 0.90 16 39 H 0.08 0.90 7.83 -2.39 -0.02 0.88 16 40 H 0.16 2.88 7.15 -2.91 -0.02 2.86 16 41 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.11 5.50 4.99 -2.91 -0.01 5.48 16 44 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -77.32 369.46 5.24 -72.08 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.96 Total: 19.97 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 5.59 Total: -36.38 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -2.14 Total: -73.64 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.92 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -1.00 Total: -3.47 kcal Total: -77.32 5.24 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856462864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.213 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds