Wall clock time and date at job start Tue Mar 31 2020 13:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33115 * 119.99910 * 2 1 4 4 F 1.35099 * 120.00023 * 352.87562 * 3 2 1 5 5 C 1.47298 * 119.99869 * 172.87956 * 3 2 1 6 6 O 1.21608 * 119.99984 * 357.77241 * 5 3 2 7 7 N 1.34779 * 120.00100 * 177.77513 * 5 3 2 8 8 C 1.46490 * 120.00047 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.47156 * 180.02562 * 8 7 5 10 10 C 1.38305 * 119.93613 * 89.99618 * 9 8 7 11 11 C 1.38092 * 120.07007 * 179.97438 * 10 9 8 12 12 C 1.38874 * 119.93374 * 0.02562 * 11 10 9 13 13 O 1.35757 * 120.07161 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99454 * 4.18707 * 13 12 11 15 15 H 1.07992 * 120.00216 * 354.94609 * 14 13 12 16 16 C 1.38663 * 119.99487 * 174.95410 * 14 13 12 17 17 N 1.31555 * 119.99736 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00131 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47236 * 89.99824 * 18 16 14 20 20 H 1.48499 * 109.46980 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47328 * 330.00239 * 18 16 14 22 22 C 1.38878 * 119.86291 * 0.27960 * 12 11 10 23 23 C 1.38102 * 119.92507 * 359.39726 * 22 12 11 24 24 C 1.50701 * 120.00129 * 179.97438 * 2 1 3 25 25 C 1.53006 * 117.49504 * 0.13733 * 24 2 1 26 26 C 1.52997 * 117.49798 * 291.47880 * 24 2 1 27 27 H 1.09001 * 109.47213 * 90.00433 * 1 2 3 28 28 H 1.09003 * 109.47678 * 210.00183 * 1 2 3 29 29 H 1.09004 * 109.47298 * 330.00549 * 1 2 3 30 30 H 0.97001 * 119.99568 * 359.97438 * 7 5 3 31 31 H 1.08992 * 109.47866 * 59.99520 * 8 7 5 32 32 H 1.09002 * 109.47168 * 299.99266 * 8 7 5 33 33 H 1.07998 * 119.95789 * 0.02562 * 10 9 8 34 34 H 1.08002 * 120.03211 * 180.02562 * 11 10 9 35 35 H 0.97004 * 119.99772 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.04065 * 179.72466 * 22 12 11 37 37 H 1.08007 * 119.96489 * 180.31773 * 23 22 12 38 38 H 1.08997 * 115.55478 * 145.80415 * 24 2 1 39 39 H 1.09000 * 117.49992 * 359.97438 * 25 24 2 40 40 H 1.08997 * 117.49782 * 145.02229 * 25 24 2 41 41 H 1.09004 * 117.50000 * 214.97660 * 26 24 2 42 42 H 1.09007 * 117.50087 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1528 0.0000 4 9 1.5049 2.3183 -0.1451 5 6 3.6370 1.1577 0.1581 6 8 4.2336 0.1120 0.3292 7 7 4.3158 2.3213 0.1132 8 6 5.7723 2.3261 0.2699 9 6 6.2823 3.7414 0.1819 10 6 6.3879 4.5095 1.3272 11 6 6.8554 5.8066 1.2498 12 6 7.2193 6.3398 0.0202 13 8 7.6788 7.6148 -0.0592 14 6 7.8399 8.2807 1.1021 15 1 7.5299 7.8274 2.0319 16 6 8.4036 9.5475 1.1022 17 7 8.5605 10.1975 2.2352 18 14 8.9403 10.3313 -0.5062 19 1 7.8107 11.1049 -1.0811 20 1 10.0866 11.2414 -0.2551 21 1 9.3504 9.2705 -1.4611 22 6 7.1062 5.5682 -1.1289 23 6 6.6442 4.2695 -1.0440 24 6 2.2605 -1.3051 0.0006 25 6 1.4383 -2.5955 -0.0021 26 6 2.1834 -2.1648 1.2638 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.8399 3.1554 -0.0236 31 1 6.2248 1.7266 -0.5199 32 1 6.0347 1.9055 1.2407 33 1 6.1051 4.0940 2.2831 34 1 6.9380 6.4057 2.1446 35 1 8.9545 11.0839 2.2353 36 1 7.3841 5.9814 -2.0872 37 1 6.5609 3.6671 -1.9367 38 1 3.2000 -1.3058 -0.5521 39 1 0.3525 -2.5004 -0.0038 40 1 1.8372 -3.4452 -0.5562 41 1 3.0721 -2.7314 1.5421 42 1 1.5880 -1.7862 2.0947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900534302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:53 Heat of formation + Delta-G solvation = -42.189237 kcal Electronic energy + Delta-G solvation = -25259.956600 eV Core-core repulsion = 21314.602539 eV Total energy + Delta-G solvation = -3945.354061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.07961 -40.04338 -39.28557 -38.06013 -37.00988 -34.57189 -33.21067 -32.49470 -30.49328 -30.29474 -28.40434 -26.16437 -24.77626 -23.32948 -22.59307 -22.21019 -21.26482 -20.66832 -19.27056 -18.10117 -17.96429 -17.36208 -16.98108 -16.20664 -15.78638 -15.22981 -15.15082 -14.65348 -14.64349 -14.36704 -14.12584 -14.06609 -13.89206 -13.49423 -13.45119 -12.92953 -12.87687 -12.74120 -12.66083 -12.28693 -12.08074 -11.87652 -11.62389 -11.51470 -11.12760 -10.97095 -10.88703 -10.83789 -10.76788 -10.23400 -9.75137 -9.49939 -9.24033 -8.96633 -8.84923 -8.40020 -7.50407 -6.51248 -4.18246 0.83116 1.91021 2.00960 2.88846 3.07342 3.17846 3.19804 3.33772 3.63876 3.97608 4.15584 4.27764 4.45661 4.47010 4.69172 4.72037 4.81897 4.83198 5.00872 5.05755 5.13380 5.15473 5.30231 5.34581 5.50814 5.52986 5.60352 5.68613 5.69714 5.77304 5.84910 5.96969 6.01309 6.20311 6.22113 6.35677 6.43885 6.65694 6.87560 7.09758 7.16515 7.41793 7.48172 7.69286 7.92729 7.99302 8.83113 9.43505 10.55793 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.002163 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.928449 B =12940.582383 C =13122.482615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.047 4.047 3 C -0.015 4.015 4 F -0.136 7.136 5 C 0.543 3.457 6 O -0.522 6.522 7 N -0.713 5.713 8 C 0.178 3.822 9 C -0.209 4.209 10 C -0.051 4.051 11 C -0.224 4.224 12 C 0.167 3.833 13 O -0.212 6.212 14 C -0.392 4.392 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.874 5.874 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.195 4.195 23 C -0.055 4.055 24 C -0.111 4.111 25 C -0.185 4.185 26 C -0.155 4.155 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.406 0.594 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.281 0.719 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -20.700 -4.780 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.050 4.050 3 C -0.037 4.037 4 F -0.115 7.115 5 C 0.329 3.671 6 O -0.401 6.401 7 N -0.363 5.363 8 C 0.057 3.943 9 C -0.211 4.211 10 C -0.070 4.070 11 C -0.243 4.243 12 C 0.114 3.886 13 O -0.116 6.116 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.511 5.511 18 Si 0.732 3.268 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.214 4.214 23 C -0.074 4.074 24 C -0.128 4.128 25 C -0.222 4.222 26 C -0.192 4.192 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.241 0.759 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.256 -21.001 -4.726 25.281 hybrid contribution -0.096 1.300 -0.448 1.378 sum -13.352 -19.701 -5.174 24.356 Atomic orbital electron populations 1.20930 0.90220 1.03718 1.03419 1.21896 0.96215 0.92746 0.94133 1.19406 0.90180 0.81815 1.12334 1.91479 1.80028 1.46466 1.93479 1.18226 0.86140 0.84620 0.78084 1.90782 1.68799 1.30824 1.49693 1.46277 1.08947 1.09016 1.72064 1.20047 0.78106 0.94265 1.01922 1.19254 1.11840 0.95812 0.94159 1.20701 0.96046 0.93265 0.96964 1.21279 1.07794 0.96718 0.98553 1.19189 0.91661 0.84364 0.93372 1.83577 1.73010 1.20533 1.34477 1.20794 1.42075 0.99455 0.84393 0.87467 1.24500 0.95548 0.95437 0.98488 1.69643 1.42165 1.13790 1.25548 0.86164 0.78598 0.79423 0.82644 1.19783 1.20694 1.18306 1.20206 1.09832 0.94411 0.96986 1.20536 0.96550 0.94041 0.96267 1.21241 1.00622 0.86994 1.03975 1.23166 0.98959 0.98040 1.02064 1.22872 1.02685 1.02323 0.91319 0.89909 0.90299 0.90643 0.75870 0.91120 0.91107 0.87072 0.84733 0.90884 0.86318 0.86743 0.84413 0.88527 0.88365 0.88209 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.27 36.00 0.33 -0.55 16 2 C -0.05 -0.45 5.81 -101.13 -0.59 -1.04 16 3 C -0.02 -0.17 7.34 -37.68 -0.28 -0.45 16 4 F -0.14 -1.56 15.90 2.25 0.04 -1.53 16 5 C 0.54 7.00 7.72 -12.58 -0.10 6.91 16 6 O -0.52 -7.57 13.25 5.27 0.07 -7.50 16 7 N -0.71 -8.94 5.54 -62.62 -0.35 -9.28 16 8 C 0.18 2.35 5.80 -5.20 -0.03 2.32 16 9 C -0.21 -3.20 5.25 -104.57 -0.55 -3.75 16 10 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 11 C -0.22 -4.58 9.17 -39.40 -0.36 -4.94 16 12 C 0.17 3.68 6.65 -39.11 -0.26 3.42 16 13 O -0.21 -5.40 8.59 0.02 0.00 -5.40 16 14 C -0.39 -10.71 9.95 30.89 0.31 -10.41 16 15 H 0.11 2.99 5.43 -52.49 -0.29 2.70 16 16 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 17 N -0.87 -24.67 13.96 55.48 0.77 -23.90 16 18 Si 0.91 21.12 28.62 -169.99 -4.86 16.26 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.20 -3.64 9.99 -39.39 -0.39 -4.03 16 23 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 24 C -0.11 -1.06 4.33 -91.77 -0.40 -1.46 16 25 C -0.19 -1.31 9.80 -26.69 -0.26 -1.57 16 26 C -0.15 -1.30 10.24 -26.69 -0.27 -1.58 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.44 6.30 -51.93 -0.33 0.11 16 29 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.41 4.88 8.01 -40.82 -0.33 4.55 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.14 2.91 5.63 -52.49 -0.30 2.62 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.14 1.57 6.22 -51.93 -0.32 1.25 16 39 H 0.10 0.56 6.27 -51.93 -0.33 0.23 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -28.95 360.14 -7.83 -36.78 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.22 Total: 7.11 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.71 Total: -17.96 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.43 Total: -33.18 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.86 Total: 16.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.95 -7.83 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900534302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.413 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds